Wall clock time and date at job start Tue Mar 31 2020 00:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86802 * 119.99779 * 2 1 4 4 H 1.48505 * 109.47226 * 274.65890 * 3 2 1 5 5 H 1.48496 * 109.46885 * 34.66138 * 3 2 1 6 6 H 1.48500 * 109.46806 * 154.66221 * 3 2 1 7 7 C 1.40033 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00097 * 196.55542 * 7 2 1 9 9 C 1.41544 * 120.00164 * 16.55856 * 7 2 1 10 10 C 1.41168 * 120.99684 * 203.74742 * 9 7 2 11 11 C 1.37592 * 119.01482 * 180.02562 * 10 9 7 12 12 N 1.32080 * 121.10839 * 0.02562 * 11 10 9 13 13 C 1.32468 * 122.23454 * 359.97438 * 12 11 10 14 14 N 1.39466 * 119.58200 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99799 * 5.18235 * 14 13 12 16 16 O 1.21272 * 120.00315 * 355.12378 * 15 14 13 17 17 C 1.50700 * 119.99874 * 175.12079 * 15 14 13 18 18 H 1.09005 * 109.57674 * 55.16249 * 17 15 14 19 19 C 1.53142 * 109.52652 * 295.00082 * 17 15 14 20 20 O 1.43078 * 109.20460 * 184.81772 * 19 17 15 21 21 C 1.43066 * 113.59306 * 57.91994 * 20 19 17 22 22 C 1.53139 * 109.15232 * 302.04564 * 21 20 19 23 23 O 1.43070 * 109.15062 * 55.31328 * 22 21 20 24 24 C 1.38600 * 120.83753 * 0.27517 * 13 12 11 25 25 H 0.96998 * 120.00643 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.49481 * 0.03459 * 10 9 7 27 27 H 1.08000 * 119.44645 * 179.97438 * 11 10 9 28 28 H 0.97001 * 120.00000 * 185.18213 * 14 13 12 29 29 H 1.09001 * 109.52369 * 64.87997 * 19 17 15 30 30 H 1.09001 * 109.52673 * 304.75197 * 19 17 15 31 31 H 1.09003 * 109.52905 * 61.95008 * 21 20 19 32 32 H 1.09007 * 109.52877 * 182.14120 * 21 20 19 33 33 H 1.09009 * 109.52575 * 175.21342 * 22 21 20 34 34 H 1.09000 * 109.52630 * 295.34377 * 22 21 20 35 35 H 1.07998 * 120.60285 * 179.72986 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3903 2.1034 -1.3955 5 1 1.4914 2.6222 0.7962 6 1 3.5846 1.4137 0.5992 7 6 2.0076 -1.2127 -0.0005 8 1 3.0540 -1.2322 0.2660 9 6 1.3439 -2.4130 -0.3504 10 6 1.8222 -3.6644 0.0945 11 6 1.1456 -4.8056 -0.2704 12 7 0.0638 -4.7454 -1.0257 13 6 -0.4255 -3.5969 -1.4690 14 7 -1.5721 -3.5977 -2.2630 15 6 -2.2347 -4.7494 -2.4886 16 8 -1.7863 -5.7979 -2.0758 17 6 -3.5328 -4.7344 -3.2539 18 1 -3.3821 -4.2511 -4.2193 19 6 -4.5888 -3.9646 -2.4556 20 8 -5.8460 -4.0500 -3.1333 21 6 -6.2973 -5.3924 -3.3358 22 6 -5.2422 -6.1619 -4.1356 23 8 -3.9850 -6.0765 -3.4579 24 6 0.1905 -2.3949 -1.1579 25 1 -0.4851 0.8400 0.0004 26 1 2.7060 -3.7252 0.7123 27 1 1.5056 -5.7667 0.0658 28 1 -1.8926 -2.7693 -2.6529 29 1 -4.2910 -2.9195 -2.3706 30 1 -4.6813 -4.3990 -1.4602 31 1 -6.4470 -5.8760 -2.3705 32 1 -7.2369 -5.3815 -3.8883 33 1 -5.5400 -7.2071 -4.2205 34 1 -5.1508 -5.7271 -5.1310 35 1 -0.2092 -1.4612 -1.5249 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531670242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:50 Heat of formation + Delta-G solvation = -80.219369 kcal Electronic energy + Delta-G solvation = -21276.323646 eV Core-core repulsion = 17853.967726 eV Total energy + Delta-G solvation = -3422.355920 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.44350 -39.16614 -37.67102 -36.09233 -34.36963 -33.82460 -31.87859 -30.57899 -29.04289 -27.78256 -26.03892 -25.11026 -22.49390 -21.99293 -21.24193 -19.81400 -17.81940 -17.58278 -16.94423 -16.45842 -16.18833 -15.58968 -15.49407 -15.19356 -14.70844 -14.26238 -14.16052 -13.81746 -13.54757 -13.23109 -12.77506 -12.64854 -12.54954 -12.18868 -11.71356 -11.47232 -11.26810 -10.97472 -10.93332 -10.73331 -10.30852 -10.17880 -9.82165 -9.48531 -9.40211 -9.24464 -8.05205 -7.77101 -7.09727 -6.86171 -4.65783 2.46166 2.74539 2.97260 2.99505 3.03155 3.12826 3.33561 3.51879 3.81543 3.99192 4.39449 4.62115 4.75055 4.78297 4.82972 4.94911 5.05789 5.27897 5.41196 5.54459 5.61633 5.64401 5.92753 6.51748 6.55874 6.72480 6.75266 6.81938 6.91122 7.05534 7.33152 7.40148 7.71239 7.86793 8.13873 8.36857 8.64555 8.69852 8.79385 9.63676 10.01907 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025307 B = 0.004308 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.148181 B = 6498.685221 C = 7423.879745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.079 3.921 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.144 3.856 10 C -0.283 4.283 11 C 0.120 3.880 12 N -0.556 5.556 13 C 0.337 3.663 14 N -0.654 5.654 15 C 0.505 3.495 16 O -0.454 6.454 17 C 0.039 3.961 18 H 0.091 0.909 19 C 0.037 3.963 20 O -0.375 6.375 21 C 0.020 3.980 22 C 0.023 3.977 23 O -0.349 6.349 24 C -0.242 4.242 25 H 0.282 0.718 26 H 0.103 0.897 27 H 0.125 0.875 28 H 0.408 0.592 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.045 -2.135 -6.880 12.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.307 4.307 11 C -0.034 4.034 12 N -0.275 5.275 13 C 0.113 3.887 14 N -0.302 5.302 15 C 0.287 3.713 16 O -0.321 6.321 17 C -0.023 4.023 18 H 0.109 0.891 19 C -0.040 4.040 20 O -0.293 6.293 21 C -0.057 4.057 22 C -0.054 4.054 23 O -0.267 6.267 24 C -0.267 4.267 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.142 0.858 28 H 0.243 0.757 29 H 0.132 0.868 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.426 -3.604 -6.807 12.962 hybrid contribution 0.515 2.026 0.038 2.091 sum -9.911 -1.578 -6.769 12.105 Atomic orbital electron populations 1.69768 1.07710 1.29454 1.34348 1.25958 0.94772 1.01515 0.91818 0.86233 0.80640 0.80253 0.79262 1.19209 1.20158 1.18419 1.19608 0.97860 0.90648 1.40485 0.89882 1.17561 0.89821 0.92304 0.86776 1.21906 1.05194 0.93876 1.09732 1.21766 0.90817 0.96886 0.93928 1.67204 1.15587 1.26554 1.18203 1.18127 0.87002 0.90929 0.92652 1.43305 1.26264 1.10210 1.50445 1.19872 0.84931 0.84827 0.81627 1.90812 1.65758 1.29681 1.45887 1.22622 0.93848 0.85817 0.99998 0.89129 1.23175 0.83206 1.02142 0.95517 1.88103 1.36476 1.25991 1.78774 1.23303 0.97871 0.83739 1.00747 1.23319 0.84216 1.02325 0.95516 1.88242 1.36368 1.23548 1.78563 1.21530 1.02521 0.95416 1.07271 0.90667 0.87900 0.85799 0.75713 0.86811 0.91198 0.91838 0.87627 0.87356 0.91989 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.93 10.92 55.55 0.61 -18.33 16 2 C 0.08 1.86 5.20 -17.35 -0.09 1.77 16 3 Si 0.91 17.55 29.59 -169.99 -5.03 12.52 16 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.45 -11.50 9.12 -37.65 -0.34 -11.84 16 8 H 0.08 2.02 7.90 -52.48 -0.41 1.60 16 9 C 0.14 3.72 5.60 -106.55 -0.60 3.12 16 10 C -0.28 -6.89 9.90 -38.71 -0.38 -7.28 16 11 C 0.12 2.88 11.15 -17.68 -0.20 2.69 16 12 N -0.56 -14.24 7.85 -12.52 -0.10 -14.34 16 13 C 0.34 8.08 7.42 -154.71 -1.15 6.94 16 14 N -0.65 -12.57 5.35 -11.49 -0.06 -12.63 16 15 C 0.51 9.77 7.14 -10.99 -0.08 9.69 16 16 O -0.45 -10.97 14.77 -14.22 -0.21 -11.18 16 17 C 0.04 0.57 3.26 -27.81 -0.09 0.48 16 18 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 19 C 0.04 0.47 6.29 37.23 0.23 0.71 16 20 O -0.37 -4.58 10.85 -48.81 -0.53 -5.11 16 21 C 0.02 0.20 7.05 37.23 0.26 0.46 16 22 C 0.02 0.24 7.05 37.23 0.26 0.50 16 23 O -0.35 -5.38 10.03 -62.49 -0.63 -6.01 16 24 C -0.24 -6.01 8.62 -38.47 -0.33 -6.34 16 25 H 0.28 6.12 8.29 -40.82 -0.34 5.78 16 26 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 27 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 28 H 0.41 6.22 8.70 -40.82 -0.35 5.87 16 29 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 0.88 8.14 -51.92 -0.42 0.45 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.13 3.13 6.20 -52.49 -0.33 2.80 16 LS Contribution 302.69 15.07 4.56 4.56 Total: -1.00 -32.51 302.69 -7.92 -40.43 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -4.03 Total: 9.18 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -2.50 Total: 0.89 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.45 Total: -45.30 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -1.37 Total: -22.29 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.51 -7.92 -40.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.784 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds