Wall clock time and date at job start Tue Mar 31 2020 00:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86802 * 119.99779 * 2 1 4 4 H 1.48505 * 109.47226 * 274.65890 * 3 2 1 5 5 H 1.48496 * 109.46885 * 34.66138 * 3 2 1 6 6 H 1.48500 * 109.46806 * 154.66221 * 3 2 1 7 7 C 1.40033 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00097 * 196.55542 * 7 2 1 9 9 C 1.41544 * 120.00164 * 16.55856 * 7 2 1 10 10 C 1.41168 * 120.99684 * 203.74742 * 9 7 2 11 11 C 1.37592 * 119.01482 * 180.02562 * 10 9 7 12 12 N 1.32080 * 121.10839 * 0.02562 * 11 10 9 13 13 C 1.32468 * 122.23454 * 359.97438 * 12 11 10 14 14 N 1.39466 * 119.58200 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99799 * 5.18235 * 14 13 12 16 16 O 1.21272 * 120.00315 * 355.12378 * 15 14 13 17 17 C 1.50700 * 119.99874 * 175.12079 * 15 14 13 18 18 H 1.09005 * 109.57674 * 55.16249 * 17 15 14 19 19 C 1.53142 * 109.52652 * 295.00082 * 17 15 14 20 20 O 1.43078 * 109.20460 * 184.81772 * 19 17 15 21 21 C 1.43066 * 113.59306 * 57.91994 * 20 19 17 22 22 C 1.53139 * 109.15232 * 302.04564 * 21 20 19 23 23 O 1.43070 * 109.15062 * 55.31328 * 22 21 20 24 24 C 1.38600 * 120.83753 * 0.27517 * 13 12 11 25 25 H 0.96998 * 120.00643 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.49481 * 0.03459 * 10 9 7 27 27 H 1.08000 * 119.44645 * 179.97438 * 11 10 9 28 28 H 0.97001 * 120.00000 * 185.18213 * 14 13 12 29 29 H 1.09001 * 109.52369 * 64.87997 * 19 17 15 30 30 H 1.09001 * 109.52673 * 304.75197 * 19 17 15 31 31 H 1.09003 * 109.52905 * 61.95008 * 21 20 19 32 32 H 1.09007 * 109.52877 * 182.14120 * 21 20 19 33 33 H 1.09009 * 109.52575 * 175.21342 * 22 21 20 34 34 H 1.09000 * 109.52630 * 295.34377 * 22 21 20 35 35 H 1.07998 * 120.60285 * 179.72986 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3903 2.1034 -1.3955 5 1 1.4914 2.6222 0.7962 6 1 3.5846 1.4137 0.5992 7 6 2.0076 -1.2127 -0.0005 8 1 3.0540 -1.2322 0.2660 9 6 1.3439 -2.4130 -0.3504 10 6 1.8222 -3.6644 0.0945 11 6 1.1456 -4.8056 -0.2704 12 7 0.0638 -4.7454 -1.0257 13 6 -0.4255 -3.5969 -1.4690 14 7 -1.5721 -3.5977 -2.2630 15 6 -2.2347 -4.7494 -2.4886 16 8 -1.7863 -5.7979 -2.0758 17 6 -3.5328 -4.7344 -3.2539 18 1 -3.3821 -4.2511 -4.2193 19 6 -4.5888 -3.9646 -2.4556 20 8 -5.8460 -4.0500 -3.1333 21 6 -6.2973 -5.3924 -3.3358 22 6 -5.2422 -6.1619 -4.1356 23 8 -3.9850 -6.0765 -3.4579 24 6 0.1905 -2.3949 -1.1579 25 1 -0.4851 0.8400 0.0004 26 1 2.7060 -3.7252 0.7123 27 1 1.5056 -5.7667 0.0658 28 1 -1.8926 -2.7693 -2.6529 29 1 -4.2910 -2.9195 -2.3706 30 1 -4.6813 -4.3990 -1.4602 31 1 -6.4470 -5.8760 -2.3705 32 1 -7.2369 -5.3815 -3.8883 33 1 -5.5400 -7.2071 -4.2205 34 1 -5.1508 -5.7271 -5.1310 35 1 -0.2092 -1.4612 -1.5249 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531670242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:49 Heat of formation + Delta-G solvation = -102.095911 kcal Electronic energy + Delta-G solvation = -21277.272284 eV Core-core repulsion = 17853.967726 eV Total energy + Delta-G solvation = -3423.304558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73066 -40.61756 -39.33151 -37.12691 -36.14044 -35.57105 -32.99744 -32.42291 -30.54776 -29.00139 -27.91941 -26.17619 -23.95651 -23.72375 -22.52828 -21.40428 -19.54040 -19.00834 -18.09504 -17.59541 -17.42748 -16.95519 -16.84365 -16.50257 -16.10782 -16.03430 -15.74824 -15.42329 -14.84324 -14.56545 -14.34830 -14.17607 -14.10889 -13.29390 -13.17322 -12.93152 -12.68215 -12.65217 -12.12639 -11.91570 -11.89873 -11.64776 -11.55968 -11.17003 -10.95138 -10.31828 -9.96673 -9.62308 -8.91433 -8.65958 -6.57117 0.68479 0.98696 1.42846 1.52170 1.55868 1.65204 1.73818 2.20917 2.60140 2.78456 2.84451 3.37942 3.50177 3.72603 3.79628 3.94998 4.10877 4.16762 4.24711 4.45611 4.51562 4.71789 4.77300 4.78850 4.81241 4.91093 5.05898 5.21965 5.46010 5.58477 5.81122 5.83674 5.91358 6.13215 6.42850 6.53974 6.77867 6.82258 7.18391 7.80162 8.25863 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025307 B = 0.004308 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.148181 B = 6498.685221 C = 7423.879745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.042 3.958 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.484 4.484 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.297 4.297 11 C 0.113 3.887 12 N -0.584 5.584 13 C 0.333 3.667 14 N -0.643 5.643 15 C 0.504 3.496 16 O -0.508 6.508 17 C 0.052 3.948 18 H 0.121 0.879 19 C 0.043 3.957 20 O -0.379 6.379 21 C 0.016 3.984 22 C 0.018 3.982 23 O -0.385 6.385 24 C -0.256 4.256 25 H 0.294 0.706 26 H 0.116 0.884 27 H 0.149 0.851 28 H 0.426 0.574 29 H 0.131 0.869 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.140 0.860 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.138 -0.784 -7.870 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.176 4.176 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.106 3.894 10 C -0.321 4.321 11 C -0.040 4.040 12 N -0.304 5.304 13 C 0.108 3.892 14 N -0.293 5.293 15 C 0.289 3.711 16 O -0.379 6.379 17 C -0.009 4.009 18 H 0.138 0.862 19 C -0.034 4.034 20 O -0.298 6.298 21 C -0.061 4.061 22 C -0.058 4.058 23 O -0.304 6.304 24 C -0.282 4.282 25 H 0.105 0.895 26 H 0.134 0.866 27 H 0.166 0.834 28 H 0.264 0.736 29 H 0.149 0.851 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.097 0.903 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.562 -2.240 -7.821 14.137 hybrid contribution 0.773 1.548 0.338 1.762 sum -10.789 -0.693 -7.483 13.148 Atomic orbital electron populations 1.69787 1.09006 1.31143 1.33487 1.26791 0.95559 1.04482 0.90719 0.85110 0.79069 0.75529 0.79552 1.18436 1.19126 1.18354 1.19890 0.98188 0.91628 1.41685 0.89802 1.17992 0.90668 0.93273 0.87423 1.22087 1.05921 0.93725 1.10339 1.22193 0.90462 0.97949 0.93410 1.67326 1.16443 1.27376 1.19257 1.18375 0.87943 0.90364 0.92547 1.43273 1.24949 1.11495 1.49543 1.20757 0.85971 0.83693 0.80681 1.90778 1.67463 1.31478 1.48197 1.22510 0.91402 0.86427 1.00599 0.86185 1.23095 0.83282 1.02606 0.94430 1.88106 1.35660 1.27520 1.78507 1.23546 0.98961 0.82483 1.01063 1.23643 0.82267 1.04047 0.95836 1.88194 1.38811 1.23877 1.79524 1.21527 1.02970 0.95659 1.08026 0.89508 0.86578 0.83414 0.73583 0.85130 0.92839 0.92270 0.84217 0.85293 0.90325 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.51 10.92 21.84 0.24 -38.27 16 2 C 0.04 1.97 5.20 85.29 0.44 2.41 16 3 Si 0.99 35.00 29.59 68.60 2.03 37.03 16 4 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 5 H -0.27 -8.99 7.11 99.48 0.71 -8.28 16 6 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 7 C -0.48 -24.64 9.12 23.52 0.21 -24.43 16 8 H 0.08 4.11 7.90 -2.91 -0.02 4.09 16 9 C 0.11 6.06 5.60 -21.11 -0.12 5.94 16 10 C -0.30 -14.75 9.90 22.84 0.23 -14.52 16 11 C 0.11 5.54 11.15 84.50 0.94 6.48 16 12 N -0.58 -30.54 7.85 -193.53 -1.52 -32.06 16 13 C 0.33 16.25 7.42 132.75 0.98 17.23 16 14 N -0.64 -24.73 5.35 -308.67 -1.65 -26.38 16 15 C 0.50 19.51 7.14 87.66 0.63 20.13 16 16 O -0.51 -25.11 14.77 15.91 0.23 -24.88 16 17 C 0.05 1.45 3.26 29.90 0.10 1.55 16 18 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 19 C 0.04 1.05 6.29 72.03 0.45 1.50 16 20 O -0.38 -8.32 10.85 -136.00 -1.48 -9.79 16 21 C 0.02 0.26 7.05 72.03 0.51 0.77 16 22 C 0.02 0.33 7.05 72.03 0.51 0.83 16 23 O -0.38 -11.43 10.03 -122.92 -1.23 -12.66 16 24 C -0.26 -12.96 8.62 22.99 0.20 -12.77 16 25 H 0.29 12.40 8.29 -92.71 -0.77 11.64 16 26 H 0.12 5.26 8.06 -2.91 -0.02 5.24 16 27 H 0.15 6.26 8.06 -2.91 -0.02 6.23 16 28 H 0.43 12.69 8.70 -92.71 -0.81 11.88 16 29 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.14 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.13 6.33 6.20 -2.91 -0.02 6.31 16 Total: -1.00 -71.43 302.69 2.03 -69.40 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.32 Total: 32.47 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 5.08 Total: 5.14 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -2.93 Total: -96.71 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -2.47 Total: -47.34 kcal Atomic # 14 Polarization: 35.00 SS G_CDS: 2.03 Total: 37.03 kcal Total: -71.43 2.03 -69.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.694 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds