Wall clock time and date at job start Mon Mar 30 2020 23:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48504 * 109.46636 * 239.99914 * 3 2 1 5 5 H 1.48498 * 109.47594 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47239 * 120.00355 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38262 * 119.99947 * 269.72023 * 15 14 13 17 17 C 1.38209 * 120.00129 * 179.79213 * 16 15 14 18 18 C 1.38259 * 119.99909 * 0.46292 * 17 16 15 19 19 C 1.38211 * 119.99793 * 359.77013 * 18 17 16 20 20 N 1.48025 * 120.00000 * 179.97438 * 19 18 17 21 21 O 1.21796 * 120.00425 * 180.02562 * 20 19 18 22 22 O 1.21804 * 119.99528 * 0.03085 * 20 19 18 23 23 C 1.38212 * 120.00159 * 90.00302 * 15 14 13 24 24 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 26 26 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 27 27 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 28 28 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 29 29 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 30 30 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 31 31 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 32 32 H 1.08000 * 119.99647 * 0.02562 * 16 15 14 33 33 H 1.08000 * 120.00068 * 180.25465 * 17 16 15 34 34 H 1.08002 * 120.00201 * 179.78895 * 18 17 16 35 35 H 1.08000 * 120.00034 * 359.97184 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 6 2.4128 -8.5484 -0.0124 16 6 2.8585 -9.0718 -1.2120 17 6 3.7600 -10.1193 -1.2166 18 6 4.2088 -10.6503 -0.0215 19 6 3.7595 -10.1303 1.1777 20 7 4.2396 -10.6991 2.4572 21 8 3.8434 -10.2413 3.5140 22 8 5.0309 -11.6251 2.4531 23 6 2.8610 -9.0796 1.1823 24 1 -0.4849 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8898 27 1 2.8721 -3.6043 0.8894 28 1 2.8721 -3.6043 -0.8905 29 1 3.1359 -6.1343 -0.0004 30 1 0.8061 -7.4652 0.8818 31 1 0.8074 -7.4565 -0.8982 32 1 2.5051 -8.6594 -2.1455 33 1 4.1113 -10.5254 -2.1536 34 1 4.9106 -11.4712 -0.0250 35 1 2.5097 -8.6735 2.1193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574010848.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:27 Heat of formation + Delta-G solvation = -28.242395 kcal Electronic energy + Delta-G solvation = -19992.393157 eV Core-core repulsion = 16572.291128 eV Total energy + Delta-G solvation = -3420.102029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.48428 -40.24794 -39.05069 -36.86005 -35.14450 -33.50508 -32.46475 -32.04954 -30.90812 -27.19237 -26.92239 -25.24126 -23.14576 -22.27391 -21.52494 -19.92850 -19.24490 -18.90722 -17.82015 -17.12315 -16.97614 -16.20031 -15.94450 -15.74756 -15.04010 -14.86357 -14.45981 -13.81845 -13.60006 -13.32250 -13.08656 -12.72821 -12.23241 -12.09529 -11.95570 -11.82645 -11.46386 -11.42220 -11.22406 -10.94166 -10.65641 -10.14051 -10.01498 -9.95647 -9.72359 -9.24104 -9.07482 -9.01583 -8.35531 -5.99701 -4.04531 -0.55362 0.34201 0.95614 1.04922 2.68198 3.10831 3.32031 3.36834 3.38176 3.50700 3.81144 3.93843 4.22016 4.33534 4.39227 4.44545 4.61052 5.00688 5.06862 5.26441 5.30744 5.35246 5.42253 5.63876 5.67119 5.78662 6.08216 6.14192 6.16016 6.46330 6.81255 7.31792 7.67860 7.70426 7.80352 8.02343 8.33427 8.62441 9.03523 9.59311 11.11184 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029013 B = 0.002771 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.868543 B =10102.543847 C =10422.368102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.511 3.489 12 O -0.530 6.530 13 N -0.744 5.744 14 C 0.159 3.841 15 C -0.098 4.098 16 C -0.049 4.049 17 C -0.117 4.117 18 C -0.053 4.053 19 C -0.046 4.046 20 N 0.028 4.972 21 O -0.156 6.156 22 O -0.162 6.162 23 C -0.038 4.038 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.398 0.602 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.853 -22.839 -3.021 24.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.405 6.405 13 N -0.399 5.399 14 C 0.035 3.965 15 C -0.099 4.099 16 C -0.068 4.068 17 C -0.136 4.136 18 C -0.072 4.072 19 C -0.129 4.129 20 N 0.548 4.452 21 O -0.372 6.372 22 O -0.377 6.377 23 C -0.057 4.057 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.232 0.768 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.536 -22.423 -3.632 23.933 hybrid contribution 1.105 0.642 0.354 1.326 sum 8.642 -21.781 -3.278 23.661 Atomic orbital electron populations 1.69984 1.06062 1.26775 1.49994 1.25023 0.94837 0.99252 0.95231 0.86641 0.79546 0.83119 0.78564 1.20256 1.21252 1.20212 1.21174 0.92896 0.91005 1.51686 0.92650 1.18901 0.93146 0.89330 0.98661 1.21885 1.00779 0.91654 1.02615 1.21649 0.88684 0.85447 0.74201 1.90689 1.14412 1.87469 1.47912 1.46288 1.10114 1.04849 1.78647 1.20137 0.91990 0.80322 1.04051 1.20032 0.99446 0.98506 0.91904 1.21690 0.93022 0.93360 0.98720 1.21257 0.97722 0.96818 0.97802 1.21138 0.97394 0.98732 0.89929 1.21127 1.05714 1.02124 0.83923 1.43631 0.99088 0.99667 1.02863 1.94578 1.60208 1.63157 1.19301 1.94536 1.28996 1.19977 1.94220 1.21066 0.92188 0.91752 1.00741 0.92841 0.95799 0.95778 0.90097 0.90151 0.76770 0.90137 0.89944 0.83501 0.83223 0.82861 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.04 0.97 4.26 -27.89 -0.12 0.86 16 10 C -0.13 -2.49 5.64 -27.89 -0.16 -2.65 16 11 C 0.51 9.07 7.83 -10.98 -0.09 8.98 16 12 O -0.53 -11.74 15.98 5.55 0.09 -11.65 16 13 N -0.74 -9.00 5.55 -61.47 -0.34 -9.34 16 14 C 0.16 1.58 5.80 -5.19 -0.03 1.55 16 15 C -0.10 -0.73 5.25 -104.62 -0.55 -1.28 16 16 C -0.05 -0.27 9.70 -39.58 -0.38 -0.66 16 17 C -0.12 -0.55 10.05 -39.58 -0.40 -0.95 16 18 C -0.05 -0.34 9.56 -39.58 -0.38 -0.72 16 19 C -0.05 -0.41 6.85 -79.95 -0.55 -0.96 16 20 N 0.03 0.32 4.45 33.96 0.15 0.47 16 21 O -0.16 -2.00 18.45 -29.46 -0.54 -2.54 16 22 O -0.16 -1.94 18.45 -29.46 -0.54 -2.48 16 23 C -0.04 -0.32 9.21 -39.58 -0.36 -0.68 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 27 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 29 H 0.40 3.81 8.46 -40.82 -0.35 3.47 16 30 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 31 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 33 H 0.15 0.29 8.06 -52.49 -0.42 -0.14 16 34 H 0.15 0.78 7.61 -52.49 -0.40 0.38 16 35 H 0.16 1.33 7.61 -52.49 -0.40 0.93 16 LS Contribution 320.24 15.07 4.83 4.83 Total: -1.00 -34.80 320.24 -8.13 -42.93 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.06 Total: -2.20 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -3.42 Total: -10.01 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.55 Total: -35.26 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -1.00 Total: -16.68 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.80 -8.13 -42.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574010848.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.683 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds