Wall clock time and date at job start Mon Mar 30 2020 23:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48504 * 109.46636 * 239.99914 * 3 2 1 5 5 H 1.48498 * 109.47594 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47239 * 120.00355 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38262 * 119.99947 * 269.72023 * 15 14 13 17 17 C 1.38209 * 120.00129 * 179.79213 * 16 15 14 18 18 C 1.38259 * 119.99909 * 0.46292 * 17 16 15 19 19 C 1.38211 * 119.99793 * 359.77013 * 18 17 16 20 20 N 1.48025 * 120.00000 * 179.97438 * 19 18 17 21 21 O 1.21796 * 120.00425 * 180.02562 * 20 19 18 22 22 O 1.21804 * 119.99528 * 0.03085 * 20 19 18 23 23 C 1.38212 * 120.00159 * 90.00302 * 15 14 13 24 24 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 26 26 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 27 27 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 28 28 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 29 29 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 30 30 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 31 31 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 32 32 H 1.08000 * 119.99647 * 0.02562 * 16 15 14 33 33 H 1.08000 * 120.00068 * 180.25465 * 17 16 15 34 34 H 1.08002 * 120.00201 * 179.78895 * 18 17 16 35 35 H 1.08000 * 120.00034 * 359.97184 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 6 2.4128 -8.5484 -0.0124 16 6 2.8585 -9.0718 -1.2120 17 6 3.7600 -10.1193 -1.2166 18 6 4.2088 -10.6503 -0.0215 19 6 3.7595 -10.1303 1.1777 20 7 4.2396 -10.6991 2.4572 21 8 3.8434 -10.2413 3.5140 22 8 5.0309 -11.6251 2.4531 23 6 2.8610 -9.0796 1.1823 24 1 -0.4849 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8898 27 1 2.8721 -3.6043 0.8894 28 1 2.8721 -3.6043 -0.8905 29 1 3.1359 -6.1343 -0.0004 30 1 0.8061 -7.4652 0.8818 31 1 0.8074 -7.4565 -0.8982 32 1 2.5051 -8.6594 -2.1455 33 1 4.1113 -10.5254 -2.1536 34 1 4.9106 -11.4712 -0.0250 35 1 2.5097 -8.6735 2.1193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574010848.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:26 Heat of formation + Delta-G solvation = -51.242680 kcal Electronic energy + Delta-G solvation = -19993.390524 eV Core-core repulsion = 16572.291128 eV Total energy + Delta-G solvation = -3421.099396 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.29510 -41.07567 -40.23688 -37.73039 -36.22886 -35.53327 -33.37057 -32.95101 -32.45311 -28.49729 -27.69436 -26.78449 -23.82186 -23.56737 -22.69470 -21.30427 -20.06979 -19.75177 -18.80990 -18.64346 -17.63587 -17.46269 -17.03609 -16.95280 -16.41822 -16.29760 -15.41730 -14.84733 -14.60029 -14.46057 -14.19966 -13.97833 -13.58464 -13.24836 -13.22955 -12.79582 -12.77506 -12.55821 -12.47123 -12.35517 -12.29736 -11.90638 -11.64200 -11.32662 -10.98190 -10.61301 -10.56066 -10.29197 -10.16147 -8.18025 -6.31972 -1.29325 -0.20304 0.24727 0.33050 1.42395 1.46419 1.54182 1.68817 2.02514 2.40637 2.53609 3.14626 3.15064 3.42204 3.65394 3.81814 3.90337 3.99338 4.08161 4.39586 4.47605 4.56361 4.56735 4.69280 4.72555 4.95364 5.05061 5.08463 5.17255 5.34967 5.45254 5.50707 5.64158 5.85921 6.17808 6.40433 6.53306 6.86680 7.29657 7.38474 8.94316 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029013 B = 0.002771 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.868543 B =10102.543847 C =10422.368102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.075 0.925 9 C 0.041 3.959 10 C -0.120 4.120 11 C 0.515 3.485 12 O -0.584 6.584 13 N -0.717 5.717 14 C 0.159 3.841 15 C -0.099 4.099 16 C -0.034 4.034 17 C -0.101 4.101 18 C -0.046 4.046 19 C -0.065 4.065 20 N 0.030 4.970 21 O -0.204 6.204 22 O -0.162 6.162 23 C -0.045 4.045 24 H 0.263 0.737 25 H -0.015 1.015 26 H -0.019 1.019 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.415 0.585 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.172 0.828 33 H 0.190 0.810 34 H 0.170 0.830 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.532 -23.675 -5.061 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.160 4.160 11 C 0.304 3.696 12 O -0.464 6.464 13 N -0.371 5.371 14 C 0.036 3.964 15 C -0.101 4.101 16 C -0.053 4.053 17 C -0.119 4.119 18 C -0.065 4.065 19 C -0.148 4.148 20 N 0.544 4.456 21 O -0.411 6.411 22 O -0.381 6.381 23 C -0.064 4.064 24 H 0.071 0.929 25 H 0.003 0.997 26 H 0.000 1.000 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.252 0.748 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.190 0.810 33 H 0.207 0.793 34 H 0.187 0.813 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.256 -23.276 -5.612 26.047 hybrid contribution 0.288 0.780 0.875 1.207 sum 10.544 -22.496 -4.737 25.292 Atomic orbital electron populations 1.70165 1.08263 1.27869 1.51439 1.26120 0.95713 1.03894 0.94672 0.85396 0.78074 0.77468 0.79451 1.18608 1.21395 1.18853 1.21701 0.93998 0.91711 1.50841 0.90655 1.18691 0.93739 0.92399 0.94801 1.21643 0.99343 0.90116 1.04904 1.21281 0.87770 0.86546 0.74051 1.90677 1.16565 1.88269 1.50850 1.45939 1.10911 1.04182 1.76106 1.20183 0.92496 0.79877 1.03829 1.19715 0.99705 0.98161 0.92493 1.22021 0.91905 0.92755 0.98585 1.21675 0.96209 0.95553 0.98427 1.21507 0.96946 0.98663 0.89378 1.21271 1.07141 1.03181 0.83203 1.44015 0.98624 0.99327 1.03622 1.94576 1.61596 1.64182 1.20722 1.94496 1.28949 1.20120 1.94489 1.21006 0.92512 0.92064 1.00851 0.92855 0.99651 1.00021 0.88016 0.87460 0.74783 0.91371 0.89356 0.81046 0.79298 0.81291 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.96 13.29 21.45 0.28 -58.67 16 2 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 3 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 8 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.04 2.24 4.26 29.85 0.13 2.37 16 10 C -0.12 -4.55 5.64 29.85 0.17 -4.39 16 11 C 0.51 18.18 7.83 87.66 0.69 18.87 16 12 O -0.58 -26.83 15.98 -3.04 -0.05 -26.88 16 13 N -0.72 -16.21 5.55 -466.79 -2.59 -18.80 16 14 C 0.16 2.98 5.80 85.63 0.50 3.48 16 15 C -0.10 -1.27 5.25 -19.86 -0.10 -1.37 16 16 C -0.03 -0.23 9.70 22.27 0.22 -0.02 16 17 C -0.10 -0.44 10.05 22.27 0.22 -0.21 16 18 C -0.05 -0.44 9.56 22.27 0.21 -0.22 16 19 C -0.06 -1.08 6.85 36.37 0.25 -0.83 16 20 N 0.03 0.69 4.45 -46.46 -0.21 0.49 16 21 O -0.20 -5.53 18.45 18.89 0.35 -5.18 16 22 O -0.16 -3.78 18.45 18.88 0.35 -3.44 16 23 C -0.04 -0.71 9.21 22.27 0.21 -0.51 16 24 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 25 H -0.01 -0.91 8.10 -2.39 -0.02 -0.93 16 26 H -0.02 -1.16 8.10 -2.38 -0.02 -1.17 16 27 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 28 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 29 H 0.42 6.77 8.46 -92.71 -0.78 5.99 16 30 H 0.07 1.49 8.09 -2.38 -0.02 1.47 16 31 H 0.09 1.62 8.08 -2.39 -0.02 1.60 16 32 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 33 H 0.19 -0.54 8.06 -2.91 -0.02 -0.56 16 34 H 0.17 1.10 7.61 -2.91 -0.02 1.08 16 35 H 0.14 2.59 7.61 -2.91 -0.02 2.57 16 Total: -1.00 -80.63 320.24 3.67 -76.95 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: 0.34 Total: 2.71 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 3.18 Total: -13.00 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -2.51 Total: -76.99 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: 0.65 Total: -35.49 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -80.63 3.67 -76.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574010848.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.712 kcal (2) G-P(sol) polarization free energy of solvation -80.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds