Wall clock time and date at job start Tue Mar 31 2020 00:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.50702 * 109.47060 * 179.97438 * 15 13 12 17 17 C 1.38254 * 120.38827 * 89.99986 * 16 15 13 18 18 N 1.31847 * 120.88432 * 179.97438 * 17 16 15 19 19 C 1.31838 * 121.78497 * 0.02562 * 18 17 16 20 20 C 1.38705 * 120.68007 * 0.02562 * 19 18 17 21 21 O 1.35920 * 120.47220 * 179.97438 * 20 19 18 22 22 C 1.38535 * 120.38931 * 269.72003 * 16 15 13 23 23 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 26 26 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 27 27 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 28 28 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 29 29 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 30 30 H 1.08001 * 119.55877 * 359.97438 * 17 16 15 31 31 H 1.07996 * 119.66098 * 179.97438 * 19 18 17 32 32 H 0.96701 * 113.99376 * 90.00588 * 21 20 19 33 33 H 1.08002 * 120.81266 * 0.02562 * 22 16 15 34 34 H 1.09001 * 113.77016 * 221.05654 * 23 12 11 35 35 H 1.09005 * 113.86980 * 89.67729 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3442 -7.2458 2.6615 17 6 0.4250 -7.9176 3.5933 18 7 0.2629 -9.2097 3.7996 19 6 -0.6310 -9.9127 3.1326 20 6 -1.4392 -9.3090 2.1807 21 8 -2.3591 -10.0379 1.4951 22 6 -1.2996 -7.9453 1.9423 23 6 2.1615 -3.7405 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.3764 -1.7802 -0.9678 26 1 1.3966 -2.5373 2.2104 27 1 -0.2731 -2.8605 1.5670 28 1 0.1879 -5.3004 3.3596 29 1 -1.0946 -5.3215 2.1255 30 1 1.1686 -7.3768 4.1599 31 1 -0.7345 -10.9696 3.3289 32 1 -3.2276 -10.0738 1.9190 33 1 -1.9174 -7.4453 1.2110 34 1 2.1758 -4.2745 -0.9513 35 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583882442.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:35 Heat of formation + Delta-G solvation = -56.203440 kcal Electronic energy + Delta-G solvation = -20984.503441 eV Core-core repulsion = 17563.188929 eV Total energy + Delta-G solvation = -3421.314511 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.60881 -39.46292 -37.66763 -37.14138 -33.99980 -33.54735 -32.24940 -30.66344 -29.29651 -27.43359 -25.32650 -25.17338 -23.62484 -22.42602 -20.12621 -18.50825 -18.08918 -17.47207 -17.03908 -16.96929 -16.39272 -15.67753 -15.25414 -14.84865 -14.80149 -14.21904 -13.70139 -13.39766 -13.32780 -13.17799 -12.74267 -12.51726 -12.36826 -12.19882 -11.81336 -11.59726 -11.28710 -11.14980 -11.06075 -10.56966 -10.34152 -9.86142 -9.62572 -9.51709 -9.26107 -8.87332 -8.79748 -8.46721 -7.90161 -6.44454 -4.54599 0.92096 1.14614 3.10978 3.11397 3.19888 3.23252 3.39209 3.66892 3.92392 4.14808 4.42478 4.66324 4.77184 4.79073 4.94079 5.00878 5.06784 5.40814 5.54755 5.61073 5.65113 5.90712 5.97238 6.11711 6.14910 6.32385 6.41156 6.46515 6.56885 6.61817 7.04462 7.35188 7.58480 7.77112 7.85508 8.41774 8.48732 8.67489 9.16837 9.40592 10.62223 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040547 B = 0.003528 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.382496 B = 7935.484051 C = 8113.413397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.239 3.761 10 O -0.573 6.573 11 C 0.075 3.925 12 N -0.632 5.632 13 C 0.529 3.471 14 O -0.558 6.558 15 C -0.096 4.096 16 C -0.088 4.088 17 C 0.103 3.897 18 N -0.467 5.467 19 C 0.070 3.930 20 C 0.055 3.945 21 O -0.492 6.492 22 C -0.089 4.089 23 C 0.112 3.888 24 H 0.273 0.727 25 H 0.393 0.607 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.389 0.611 33 H 0.139 0.861 34 H 0.070 0.930 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 -9.434 7.704 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.197 3.803 10 O -0.386 6.386 11 C -0.047 4.047 12 N -0.366 5.366 13 C 0.318 3.682 14 O -0.438 6.438 15 C -0.136 4.136 16 C -0.090 4.090 17 C -0.054 4.054 18 N -0.176 5.176 19 C -0.087 4.087 20 C 0.009 3.991 21 O -0.300 6.300 22 C -0.115 4.115 23 C -0.010 4.010 24 H 0.084 0.916 25 H 0.248 0.752 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.174 0.826 31 H 0.175 0.825 32 H 0.245 0.755 33 H 0.157 0.843 34 H 0.088 0.912 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.866 -11.074 7.535 13.941 hybrid contribution -0.869 1.967 -0.127 2.154 sum -4.736 -9.107 7.408 12.659 Atomic orbital electron populations 1.69313 1.06197 1.28210 1.50216 1.25066 0.95022 0.99896 0.93008 0.86323 0.79857 0.81921 0.78384 1.20293 1.19530 1.20894 1.21520 0.93970 0.89971 1.52066 0.91026 1.19840 0.85461 0.91210 0.83805 1.86063 1.45197 1.50510 1.56785 1.24356 1.00022 0.77673 1.02692 1.50177 1.41977 1.04559 1.39840 1.19912 0.83266 0.81813 0.83229 1.90680 1.56229 1.40192 1.56701 1.20558 1.00709 0.92483 0.99880 1.20342 0.95931 0.96153 0.96607 1.22633 0.96919 0.90085 0.95790 1.67683 1.17357 1.07752 1.24837 1.23065 0.93001 1.00525 0.92157 1.19469 0.94834 0.90142 0.94664 1.84875 1.23578 1.71878 1.49677 1.21826 0.98402 0.93293 0.97999 1.23466 0.93790 0.92465 0.91286 0.91626 0.75173 0.89859 0.91300 0.87684 0.87791 0.82561 0.82477 0.75484 0.84283 0.91174 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.99 11.09 55.43 0.61 -21.37 16 2 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 3 Si 0.91 18.93 29.54 -169.99 -5.02 13.91 16 4 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.54 -13.06 8.62 -34.44 -0.30 -13.35 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.24 5.51 1.44 -90.84 -0.13 5.38 16 10 O -0.57 -14.32 13.48 -35.23 -0.48 -14.79 16 11 C 0.08 1.51 8.01 -2.97 -0.02 1.49 16 12 N -0.63 -12.72 3.61 -178.30 -0.64 -13.36 16 13 C 0.53 10.17 8.05 -10.99 -0.09 10.08 16 14 O -0.56 -12.67 16.76 5.55 0.09 -12.58 16 15 C -0.10 -1.35 5.60 -29.04 -0.16 -1.51 16 16 C -0.09 -1.24 4.39 -104.51 -0.46 -1.70 16 17 C 0.10 1.42 10.86 -17.54 -0.19 1.23 16 18 N -0.47 -6.60 10.35 -13.13 -0.14 -6.73 16 19 C 0.07 0.88 11.14 -17.38 -0.19 0.68 16 20 C 0.06 0.69 6.74 -39.07 -0.26 0.43 16 21 O -0.49 -5.17 13.53 -19.49 -0.26 -5.43 16 22 C -0.09 -1.21 9.81 -39.14 -0.38 -1.59 16 23 C 0.11 2.38 8.22 -2.97 -0.02 2.36 16 24 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 25 H 0.39 9.87 6.46 45.56 0.29 10.16 16 26 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.10 1.22 8.09 -51.93 -0.42 0.80 16 29 H 0.10 1.33 8.09 -51.93 -0.42 0.91 16 30 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.39 1.93 9.06 45.56 0.41 2.34 16 33 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -30.69 312.43 -6.07 -36.76 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -2.63 Total: 13.74 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -2.31 Total: 5.15 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -0.16 Total: -41.46 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.65 Total: -32.80 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.69 -6.07 -36.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583882442.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.441 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds