Wall clock time and date at job start Tue Mar 31 2020 00:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.50702 * 109.47060 * 179.97438 * 15 13 12 17 17 C 1.38254 * 120.38827 * 89.99986 * 16 15 13 18 18 N 1.31847 * 120.88432 * 179.97438 * 17 16 15 19 19 C 1.31838 * 121.78497 * 0.02562 * 18 17 16 20 20 C 1.38705 * 120.68007 * 0.02562 * 19 18 17 21 21 O 1.35920 * 120.47220 * 179.97438 * 20 19 18 22 22 C 1.38535 * 120.38931 * 269.72003 * 16 15 13 23 23 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 26 26 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 27 27 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 28 28 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 29 29 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 30 30 H 1.08001 * 119.55877 * 359.97438 * 17 16 15 31 31 H 1.07996 * 119.66098 * 179.97438 * 19 18 17 32 32 H 0.96701 * 113.99376 * 90.00588 * 21 20 19 33 33 H 1.08002 * 120.81266 * 0.02562 * 22 16 15 34 34 H 1.09001 * 113.77016 * 221.05654 * 23 12 11 35 35 H 1.09005 * 113.86980 * 89.67729 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3442 -7.2458 2.6615 17 6 0.4250 -7.9176 3.5933 18 7 0.2629 -9.2097 3.7996 19 6 -0.6310 -9.9127 3.1326 20 6 -1.4392 -9.3090 2.1807 21 8 -2.3591 -10.0379 1.4951 22 6 -1.2996 -7.9453 1.9423 23 6 2.1615 -3.7405 -0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.3764 -1.7802 -0.9678 26 1 1.3966 -2.5373 2.2104 27 1 -0.2731 -2.8605 1.5670 28 1 0.1879 -5.3004 3.3596 29 1 -1.0946 -5.3215 2.1255 30 1 1.1686 -7.3768 4.1599 31 1 -0.7345 -10.9696 3.3289 32 1 -3.2276 -10.0738 1.9190 33 1 -1.9174 -7.4453 1.2110 34 1 2.1758 -4.2745 -0.9513 35 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583882442.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:35 Heat of formation + Delta-G solvation = -80.634992 kcal Electronic energy + Delta-G solvation = -20985.562872 eV Core-core repulsion = 17563.188929 eV Total energy + Delta-G solvation = -3422.373943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.68117 -40.97570 -39.12573 -38.18845 -35.80563 -34.66085 -34.11706 -31.69212 -30.74241 -28.81076 -26.98000 -26.81945 -24.61536 -23.51768 -21.75557 -19.98562 -19.27698 -19.07779 -18.02684 -17.98073 -17.92477 -17.25075 -16.70881 -16.37559 -16.06823 -15.87093 -15.04457 -14.76254 -14.37752 -14.32069 -14.20797 -14.01843 -13.77518 -13.45262 -13.37741 -13.12881 -12.83576 -12.73592 -12.24921 -12.22140 -12.19167 -11.42934 -11.04715 -10.72125 -10.61738 -10.46657 -10.22915 -9.82955 -9.56368 -8.25871 -6.42219 -0.04910 0.14105 1.47358 1.51696 1.59665 1.62987 1.95628 2.41768 2.64977 2.97217 3.01491 3.46459 3.55411 3.66143 3.81905 3.87734 3.96457 4.09490 4.20560 4.41645 4.48928 4.60138 4.60321 4.69322 4.83781 4.93246 4.96899 5.01027 5.13101 5.26824 5.53984 5.74357 5.94704 6.62932 6.69194 6.86313 6.89444 7.13582 7.31597 7.48928 8.79927 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040547 B = 0.003528 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.382496 B = 7935.484051 C = 8113.413397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.036 3.964 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.284 1.284 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.217 3.783 10 O -0.588 6.588 11 C 0.093 3.907 12 N -0.633 5.633 13 C 0.524 3.476 14 O -0.597 6.597 15 C -0.084 4.084 16 C -0.100 4.100 17 C 0.091 3.909 18 N -0.485 5.485 19 C 0.066 3.934 20 C 0.060 3.940 21 O -0.498 6.498 22 C -0.104 4.104 23 C 0.109 3.891 24 H 0.276 0.724 25 H 0.389 0.611 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.171 0.829 31 H 0.183 0.817 32 H 0.415 0.585 33 H 0.143 0.857 34 H 0.053 0.947 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 -9.446 8.906 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.165 4.165 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.210 1.210 7 C -0.595 4.595 8 H 0.088 0.912 9 C 0.176 3.824 10 O -0.401 6.401 11 C -0.030 4.030 12 N -0.367 5.367 13 C 0.315 3.685 14 O -0.480 6.480 15 C -0.124 4.124 16 C -0.103 4.103 17 C -0.065 4.065 18 N -0.194 5.194 19 C -0.091 4.091 20 C 0.014 3.986 21 O -0.311 6.311 22 C -0.130 4.130 23 C -0.014 4.014 24 H 0.086 0.914 25 H 0.244 0.756 26 H 0.115 0.885 27 H 0.093 0.907 28 H 0.152 0.848 29 H 0.137 0.863 30 H 0.188 0.812 31 H 0.200 0.800 32 H 0.274 0.726 33 H 0.161 0.839 34 H 0.072 0.928 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.307 -11.091 8.759 14.774 hybrid contribution -0.784 1.883 -0.568 2.117 sum -5.091 -9.208 8.192 13.334 Atomic orbital electron populations 1.69367 1.07000 1.28896 1.50300 1.25695 0.95747 1.02408 0.92670 0.85420 0.78434 0.78484 0.78470 1.19530 1.19823 1.21001 1.21738 0.94126 0.90902 1.52705 0.91163 1.20135 0.85589 0.91579 0.85144 1.86050 1.45659 1.50335 1.58007 1.24146 1.00542 0.77168 1.01105 1.50199 1.41752 1.05129 1.39581 1.20797 0.83455 0.80651 0.83549 1.90657 1.57819 1.41161 1.58316 1.20547 0.99547 0.93168 0.99090 1.20377 0.96558 0.96125 0.97225 1.22903 0.97245 0.90295 0.96091 1.67716 1.18087 1.08017 1.25598 1.23495 0.92320 1.01622 0.91708 1.19479 0.95109 0.89822 0.94227 1.84813 1.24881 1.71345 1.50026 1.22041 0.98693 0.94076 0.98235 1.23452 0.94689 0.91891 0.91350 0.91409 0.75637 0.88468 0.90670 0.84772 0.86271 0.81193 0.79995 0.72553 0.83876 0.92825 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -44.18 11.09 21.45 0.24 -43.95 16 2 C 0.04 1.68 5.40 84.66 0.46 2.14 16 3 Si 0.97 38.11 29.54 68.60 2.03 40.14 16 4 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.56 -26.81 8.62 25.60 0.22 -26.59 16 8 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 9 C 0.22 9.96 1.44 -10.88 -0.02 9.94 16 10 O -0.59 -29.63 13.48 -148.98 -2.01 -31.64 16 11 C 0.09 3.59 8.01 86.48 0.69 4.29 16 12 N -0.63 -24.96 3.61 -840.23 -3.03 -27.99 16 13 C 0.52 19.67 8.05 87.66 0.71 20.38 16 14 O -0.60 -27.05 16.76 -3.04 -0.05 -27.11 16 15 C -0.08 -2.20 5.60 29.10 0.16 -2.04 16 16 C -0.10 -2.69 4.39 -19.79 -0.09 -2.78 16 17 C 0.09 2.40 10.86 84.69 0.92 3.32 16 18 N -0.48 -13.04 10.35 -195.45 -2.02 -15.06 16 19 C 0.07 1.54 11.14 84.80 0.94 2.48 16 20 C 0.06 1.41 6.74 22.60 0.15 1.56 16 21 O -0.50 -9.43 13.53 -92.65 -1.25 -10.68 16 22 C -0.10 -2.69 9.81 22.56 0.22 -2.47 16 23 C 0.11 4.64 8.22 86.48 0.71 5.35 16 24 H 0.28 12.65 8.31 -92.71 -0.77 11.88 16 25 H 0.39 19.72 6.46 -74.06 -0.48 19.25 16 26 H 0.10 3.49 8.09 -2.39 -0.02 3.47 16 27 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.13 2.73 8.09 -2.39 -0.02 2.71 16 29 H 0.12 2.79 8.09 -2.39 -0.02 2.77 16 30 H 0.17 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.41 3.07 9.06 -74.06 -0.67 2.40 16 33 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.10 3.93 8.09 -2.38 -0.02 3.91 16 Total: -1.00 -64.70 312.43 -1.03 -65.73 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: -0.01 Total: 34.97 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 5.09 Total: 15.58 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -4.82 Total: -86.99 kcal Atomic # 8 Polarization: -66.12 SS G_CDS: -3.31 Total: -69.43 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -64.70 -1.03 -65.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583882442.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.905 kcal (2) G-P(sol) polarization free energy of solvation -64.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds