Wall clock time and date at job start Mon Mar 30 2020 23:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99440 * 2 1 4 4 H 1.48508 * 109.47126 * 239.99672 * 3 2 1 5 5 H 1.48494 * 109.47553 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47020 * 119.99941 * 3 2 1 7 7 C 1.37876 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00176 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64620 * 298.30652 * 9 7 2 11 11 C 1.54602 * 110.72351 * 61.45587 * 9 7 2 12 12 C 1.53990 * 105.14218 * 140.31561 * 11 9 7 13 13 N 1.47896 * 107.05580 * 1.22602 * 12 11 9 14 14 C 1.39683 * 110.99863 * 214.15465 * 13 12 11 15 15 C 1.38931 * 120.07233 * 63.96671 * 14 13 12 16 16 C 1.38087 * 119.92544 * 179.97438 * 15 14 13 17 17 C 1.38309 * 120.07009 * 0.27206 * 16 15 14 18 18 C 1.38269 * 120.15254 * 359.45376 * 17 16 15 19 19 C 1.38120 * 120.07197 * 0.54511 * 18 17 16 20 20 N 1.48005 * 120.04022 * 179.74877 * 19 18 17 21 21 O 1.21808 * 119.99463 * 5.37271 * 20 19 18 22 22 O 1.21799 * 120.00273 * 185.36803 * 20 19 18 23 23 C 1.48536 * 105.82402 * 334.66964 * 13 12 11 24 24 H 0.97002 * 120.00467 * 0.02562 * 1 2 3 25 25 H 0.96705 * 114.00294 * 61.69396 * 10 9 7 26 26 H 1.08998 * 110.30790 * 21.39518 * 11 9 7 27 27 H 1.09001 * 110.39195 * 259.27730 * 11 9 7 28 28 H 1.08997 * 109.91841 * 241.87390 * 12 11 9 29 29 H 1.08998 * 109.91680 * 120.57731 * 12 11 9 30 30 H 1.08004 * 120.03666 * 0.02562 * 15 14 13 31 31 H 1.07991 * 119.96337 * 179.97438 * 16 15 14 32 32 H 1.08005 * 119.92311 * 179.69895 * 17 16 15 33 33 H 1.07994 * 119.96474 * 180.27338 * 18 17 16 34 34 H 1.09003 * 110.66821 * 157.64676 * 23 13 12 35 35 H 1.09004 * 110.66453 * 280.77260 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 8 0.4506 -2.6177 1.1794 11 6 0.3788 -2.6283 -1.2681 12 6 0.5066 -4.1022 -1.6956 13 7 1.3767 -4.7681 -0.7023 14 6 2.1581 -5.7570 -1.3045 15 6 3.1031 -5.4105 -2.2621 16 6 3.8743 -6.3905 -2.8552 17 6 3.7028 -7.7164 -2.5008 18 6 2.7671 -8.0641 -1.5440 19 6 1.9924 -7.0889 -0.9469 20 7 0.9872 -7.4625 0.0731 21 8 0.9096 -8.6156 0.4578 22 8 0.2378 -6.6169 0.5279 23 6 2.2272 -3.6957 -0.1253 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2276 -1.9336 1.2645 26 1 0.7545 -1.9726 -2.0535 27 1 -0.6601 -2.3889 -1.0411 28 1 0.9584 -4.1638 -2.6856 29 1 -0.4764 -4.5731 -1.7031 30 1 3.2350 -4.3757 -2.5419 31 1 4.6088 -6.1219 -3.5999 32 1 4.3038 -8.4815 -2.9696 33 1 2.6388 -9.0999 -1.2664 34 1 2.6052 -3.9895 0.8540 35 1 3.0489 -3.4521 -0.7988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591975725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:38 Heat of formation + Delta-G solvation = -22.211441 kcal Electronic energy + Delta-G solvation = -22170.199834 eV Core-core repulsion = 18750.359326 eV Total energy + Delta-G solvation = -3419.840508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.06623 -41.28983 -39.30135 -37.41924 -36.52833 -34.17140 -33.04290 -32.51720 -29.95957 -29.71888 -27.32152 -26.52185 -24.20497 -23.17522 -21.86845 -21.45147 -20.17709 -19.45047 -19.00908 -18.36024 -17.85965 -17.05989 -16.73444 -16.42661 -15.93949 -15.55551 -15.47629 -14.97240 -14.42524 -14.14698 -13.73264 -13.46988 -13.25503 -13.18192 -12.91687 -12.67986 -12.56875 -12.49011 -12.35257 -12.25082 -12.07420 -12.03309 -11.77758 -11.16960 -10.61711 -10.55771 -10.14018 -10.03994 -9.49895 -8.21113 -6.38361 -1.10594 -0.08089 0.43096 0.62061 1.42233 1.44827 1.51727 2.30991 2.37934 2.68007 3.04319 3.48174 3.73216 3.77574 3.92018 3.99013 4.03381 4.12935 4.19130 4.30820 4.51983 4.58267 4.70032 4.85633 4.97263 5.02005 5.12668 5.13914 5.33047 5.37622 5.52751 5.53113 5.60691 5.79807 6.11480 6.22559 6.67285 6.71365 7.33925 7.48535 8.84329 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026342 B = 0.005437 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.687184 B = 5148.645907 C = 5810.333362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.032 3.968 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.562 4.562 8 H 0.059 0.941 9 C 0.243 3.757 10 O -0.591 6.591 11 C -0.115 4.115 12 C 0.055 3.945 13 N -0.491 5.491 14 C 0.133 3.867 15 C -0.163 4.163 16 C -0.038 4.038 17 C -0.109 4.109 18 C -0.054 4.054 19 C -0.059 4.059 20 N 0.030 4.970 21 O -0.192 6.192 22 O -0.167 6.167 23 C 0.069 3.931 24 H 0.269 0.731 25 H 0.372 0.628 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.148 0.852 31 H 0.184 0.816 32 H 0.193 0.807 33 H 0.168 0.832 34 H 0.055 0.945 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.191 -12.240 -10.497 18.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.169 4.169 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.601 4.601 8 H 0.077 0.923 9 C 0.203 3.797 10 O -0.398 6.398 11 C -0.154 4.154 12 C -0.070 4.070 13 N -0.213 5.213 14 C 0.037 3.963 15 C -0.184 4.184 16 C -0.056 4.056 17 C -0.127 4.127 18 C -0.074 4.074 19 C -0.143 4.143 20 N 0.544 4.456 21 O -0.402 6.402 22 O -0.382 6.382 23 C -0.057 4.057 24 H 0.079 0.921 25 H 0.221 0.779 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.166 0.834 31 H 0.202 0.798 32 H 0.210 0.790 33 H 0.186 0.814 34 H 0.073 0.927 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.548 -12.741 -10.463 19.052 hybrid contribution -0.401 1.913 0.155 1.961 sum 9.147 -10.827 -10.308 17.526 Atomic orbital electron populations 1.69825 1.06971 1.28310 1.49809 1.25694 0.95747 1.02284 0.93194 0.85572 0.78384 0.78637 0.78761 1.19160 1.20849 1.20273 1.21774 0.93576 0.91708 1.53005 0.92291 1.19554 0.87154 0.90820 0.82172 1.86187 1.51613 1.56002 1.46018 1.22719 1.00576 0.92593 0.99509 1.22903 0.96818 0.94673 0.92619 1.62508 1.18094 1.11063 1.29597 1.19272 0.93614 0.90757 0.92701 1.22068 0.96795 1.02777 0.96748 1.22010 0.95580 0.91862 0.96183 1.21739 0.97111 0.97940 0.95870 1.21417 0.92330 0.99648 0.93973 1.21504 0.98547 0.95503 0.98795 1.43896 1.01110 0.99839 1.00739 1.94395 1.76712 1.05298 1.63787 1.94731 1.38994 1.45083 1.59387 1.23205 0.94650 0.89503 0.98332 0.92138 0.77936 0.92327 0.93221 0.91991 0.91578 0.83446 0.79828 0.78972 0.81441 0.92660 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.52 11.00 21.45 0.24 -48.28 16 2 C 0.03 1.66 5.28 84.65 0.45 2.10 16 3 Si 0.96 41.11 29.54 68.60 2.03 43.14 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.56 -29.52 8.14 25.60 0.21 -29.31 16 8 H 0.06 3.02 7.78 -2.91 -0.02 3.00 16 9 C 0.24 12.19 0.95 -10.34 -0.01 12.18 16 10 O -0.59 -32.94 13.10 -148.98 -1.95 -34.89 16 11 C -0.12 -5.29 5.26 31.47 0.17 -5.12 16 12 C 0.06 2.15 6.54 86.45 0.57 2.71 16 13 N -0.49 -19.76 3.18 -682.79 -2.17 -21.93 16 14 C 0.13 4.28 4.82 38.21 0.18 4.47 16 15 C -0.16 -3.79 7.97 22.40 0.18 -3.61 16 16 C -0.04 -0.51 10.04 22.25 0.22 -0.29 16 17 C -0.11 -1.31 10.04 22.29 0.22 -1.09 16 18 C -0.05 -1.10 9.55 22.25 0.21 -0.88 16 19 C -0.06 -1.83 6.86 36.51 0.25 -1.58 16 20 N 0.03 1.17 4.45 -46.16 -0.21 0.96 16 21 O -0.19 -7.02 18.46 18.88 0.35 -6.67 16 22 O -0.17 -7.63 17.12 18.89 0.32 -7.30 16 23 C 0.07 2.99 5.53 86.65 0.48 3.46 16 24 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 25 H 0.37 20.92 7.46 -74.05 -0.55 20.36 16 26 H 0.06 2.70 7.84 -2.39 -0.02 2.68 16 27 H 0.05 2.47 7.99 -2.39 -0.02 2.45 16 28 H 0.06 2.03 6.96 -2.39 -0.02 2.02 16 29 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.15 3.38 7.01 -2.91 -0.02 3.36 16 31 H 0.18 0.94 8.06 -2.92 -0.02 0.91 16 32 H 0.19 0.55 8.06 -2.91 -0.02 0.52 16 33 H 0.17 2.76 7.62 -2.91 -0.02 2.74 16 34 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.07 2.76 6.30 -2.38 -0.02 2.75 16 Total: -1.00 -67.92 298.81 2.31 -65.61 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.58 Total: 26.31 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 3.13 Total: -16.96 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -2.14 Total: -69.25 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -1.28 Total: -48.86 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -67.92 2.31 -65.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.397 kcal (2) G-P(sol) polarization free energy of solvation -67.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds