Wall clock time and date at job start Mon Mar 30 2020 23:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00077 * 2 1 4 4 H 1.48506 * 109.46921 * 267.31425 * 3 2 1 5 5 H 1.48502 * 109.47260 * 27.31293 * 3 2 1 6 6 H 1.48494 * 109.47484 * 147.31285 * 3 2 1 7 7 C 1.37868 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00055 * 353.54697 * 7 2 1 9 9 C 1.50705 * 120.00113 * 173.54156 * 7 2 1 10 10 O 1.42897 * 110.87478 * 328.67733 * 9 7 2 11 11 C 1.55142 * 110.99007 * 204.83052 * 9 7 2 12 12 C 1.54326 * 103.01740 * 206.21800 * 11 9 7 13 13 N 1.47435 * 107.23121 * 22.28661 * 12 11 9 14 14 C 1.39677 * 111.00274 * 123.25766 * 13 12 11 15 15 C 1.38931 * 120.07143 * 300.08382 * 14 13 12 16 16 C 1.38090 * 119.92049 * 180.24958 * 15 14 13 17 17 C 1.38304 * 120.07453 * 359.79211 * 16 15 14 18 18 C 1.38261 * 120.15295 * 359.97438 * 17 16 15 19 19 C 1.38122 * 120.07377 * 0.02562 * 18 17 16 20 20 N 1.48006 * 120.03873 * 179.97438 * 19 18 17 21 21 O 1.21799 * 119.99795 * 359.97438 * 20 19 18 22 22 O 1.21800 * 120.00065 * 179.72293 * 20 19 18 23 23 C 1.47850 * 108.57198 * 0.98972 * 13 12 11 24 24 H 0.97001 * 119.99869 * 0.02562 * 1 2 3 25 25 H 0.96693 * 114.00017 * 292.35977 * 10 9 7 26 26 H 1.08995 * 110.70441 * 87.84059 * 11 9 7 27 27 H 1.08994 * 110.85853 * 324.67038 * 11 9 7 28 28 H 1.08994 * 109.88526 * 262.87775 * 12 11 9 29 29 H 1.08998 * 110.02050 * 141.76853 * 12 11 9 30 30 H 1.07996 * 120.04492 * 0.03530 * 15 14 13 31 31 H 1.07998 * 119.95790 * 179.76156 * 16 15 14 32 32 H 1.08008 * 119.92040 * 179.97438 * 17 16 15 33 33 H 1.08002 * 119.96126 * 179.97438 * 18 17 16 34 34 H 1.08993 * 110.37098 * 94.73617 * 23 13 12 35 35 H 1.09002 * 110.37487 * 217.07807 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5535 2.0136 -1.3986 5 1 1.4194 2.6685 0.6424 6 1 3.5171 1.4573 0.7561 7 6 2.0045 -1.1940 0.0005 8 1 1.4697 -2.1263 0.1061 9 6 3.5044 -1.1982 -0.1463 10 8 3.9404 -0.1002 -0.9502 11 6 4.0018 -2.5467 -0.7303 12 6 5.4447 -2.6474 -0.1922 13 7 5.5264 -1.7873 1.0025 14 6 5.9493 -2.5164 2.1163 15 6 5.2046 -3.6014 2.5618 16 6 5.6229 -4.3168 3.6664 17 6 6.7838 -3.9570 4.3263 18 6 7.5298 -2.8808 3.8826 19 6 7.1173 -2.1608 2.7785 20 7 7.9161 -1.0085 2.3046 21 8 8.9377 -0.6944 2.8886 22 8 7.5544 -0.3772 1.3278 23 6 4.1983 -1.1820 1.2386 24 1 -0.4850 0.8401 -0.0004 25 1 3.6748 -0.1621 -1.8779 26 1 3.9979 -2.5196 -1.8199 27 1 3.3954 -3.3752 -0.3645 28 1 6.1477 -2.2989 -0.9488 29 1 5.6714 -3.6789 0.0773 30 1 4.2979 -3.8828 2.0471 31 1 5.0424 -5.1579 4.0156 32 1 7.1084 -4.5181 5.1902 33 1 8.4357 -2.6023 4.4006 34 1 3.6316 -1.7778 1.9541 35 1 4.3061 -0.1583 1.5971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591975726.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:42 Heat of formation + Delta-G solvation = 0.760338 kcal Electronic energy + Delta-G solvation = -22358.658373 eV Core-core repulsion = 18939.813997 eV Total energy + Delta-G solvation = -3418.844376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.81446 -40.15159 -38.19441 -36.09706 -35.28082 -32.38804 -32.03402 -31.38370 -28.69717 -28.52117 -26.08220 -24.73596 -23.05355 -22.15755 -20.65390 -19.85808 -18.94650 -18.16308 -17.46217 -17.06509 -16.83852 -15.76526 -15.34037 -15.14052 -14.73440 -14.55541 -14.20832 -13.64813 -13.01021 -12.75770 -12.59313 -12.28491 -12.10964 -11.84008 -11.68542 -11.52618 -11.09962 -10.85618 -10.67749 -10.63133 -10.56002 -10.28205 -10.18992 -9.62829 -9.27504 -9.09430 -8.64785 -8.46521 -8.10752 -6.23048 -4.36321 0.05289 0.82906 1.60779 1.77841 3.21767 3.49418 3.56221 3.75914 3.87464 4.40672 4.51135 4.59195 4.75359 4.85626 4.96424 5.01987 5.18620 5.20722 5.40057 5.46139 5.66299 5.76234 5.83795 5.95544 6.02640 6.12508 6.24722 6.34914 6.53125 6.63575 6.74542 6.92129 7.07471 7.42913 7.47988 8.10706 8.11189 8.63162 8.79851 9.39492 10.85175 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.006467 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.173993 B = 4328.402136 C = 4839.092203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.946 3.054 4 H -0.290 1.290 5 H -0.327 1.327 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.228 3.772 10 O -0.549 6.549 11 C -0.158 4.158 12 C 0.053 3.947 13 N -0.493 5.493 14 C 0.170 3.830 15 C -0.154 4.154 16 C -0.062 4.062 17 C -0.133 4.133 18 C -0.057 4.057 19 C -0.035 4.035 20 N 0.027 4.973 21 O -0.214 6.214 22 O -0.086 6.086 23 C 0.058 3.942 24 H 0.267 0.733 25 H 0.368 0.632 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.061 0.939 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.489 -9.864 5.733 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.130 4.130 3 Si 0.781 3.219 4 H -0.218 1.218 5 H -0.258 1.258 6 H -0.190 1.190 7 C -0.593 4.593 8 H 0.096 0.904 9 C 0.187 3.813 10 O -0.356 6.356 11 C -0.196 4.196 12 C -0.073 4.073 13 N -0.215 5.215 14 C 0.073 3.927 15 C -0.174 4.174 16 C -0.081 4.081 17 C -0.152 4.152 18 C -0.076 4.076 19 C -0.120 4.120 20 N 0.548 4.452 21 O -0.414 6.414 22 O -0.320 6.320 23 C -0.066 4.066 24 H 0.076 0.924 25 H 0.216 0.784 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.165 0.835 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.080 0.920 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.653 -9.763 6.542 16.549 hybrid contribution -0.322 0.229 -0.404 0.565 sum 11.331 -9.534 6.138 16.030 Atomic orbital electron populations 1.69968 1.06918 1.27942 1.47398 1.25158 0.94900 1.00713 0.92272 0.85703 0.78042 0.79729 0.78396 1.21758 1.25847 1.18999 1.21182 0.88594 0.95232 1.54318 0.90374 1.20076 0.92961 0.81864 0.86359 1.86189 1.79810 1.46128 1.23488 1.23420 0.94014 1.01067 1.01149 1.22885 0.98904 0.93783 0.91689 1.61583 1.30655 1.29115 1.00122 1.19082 0.90556 0.90957 0.92077 1.22025 1.01179 0.95911 0.98307 1.21494 0.95101 0.98133 0.93343 1.21134 0.95503 0.97247 1.01290 1.20985 1.00224 0.93472 0.92943 1.21221 0.96016 0.93523 1.01199 1.43412 1.00197 1.01306 1.00277 1.94472 1.14509 1.73328 1.59069 1.94685 1.73014 1.49954 1.14353 1.23719 0.83413 0.99840 0.99610 0.92371 0.78404 0.90917 0.91146 0.90085 0.93566 0.83521 0.84297 0.83965 0.83209 0.92047 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.95 23.73 24.91 -169.99 -4.23 19.49 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.33 -8.42 7.11 56.52 0.40 -8.02 16 6 H -0.26 -6.73 5.39 56.52 0.30 -6.42 16 7 C -0.56 -14.35 8.89 -34.44 -0.31 -14.65 16 8 H 0.08 2.17 8.00 -52.49 -0.42 1.75 16 9 C 0.23 4.92 0.70 -89.63 -0.06 4.86 16 10 O -0.55 -12.06 8.52 -35.23 -0.30 -12.36 16 11 C -0.16 -2.77 6.11 -24.90 -0.15 -2.92 16 12 C 0.05 0.86 6.53 -2.84 -0.02 0.84 16 13 N -0.49 -9.00 3.04 -167.92 -0.51 -9.51 16 14 C 0.17 2.70 4.62 -83.78 -0.39 2.31 16 15 C -0.15 -1.97 7.81 -39.38 -0.31 -2.27 16 16 C -0.06 -0.59 10.04 -39.61 -0.40 -0.99 16 17 C -0.13 -1.21 10.04 -39.55 -0.40 -1.60 16 18 C -0.06 -0.67 9.55 -39.62 -0.38 -1.05 16 19 C -0.04 -0.55 6.87 -79.75 -0.55 -1.10 16 20 N 0.03 0.49 4.45 34.06 0.15 0.64 16 21 O -0.21 -3.84 18.45 -29.46 -0.54 -4.39 16 22 O -0.09 -1.77 17.10 -29.46 -0.50 -2.27 16 23 C 0.06 1.21 5.52 -2.29 -0.01 1.20 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.37 6.99 8.99 45.56 0.41 7.40 16 26 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 27 H 0.07 1.21 7.99 -51.93 -0.42 0.79 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.05 0.65 7.02 -51.93 -0.36 0.29 16 30 H 0.15 1.85 7.72 -52.49 -0.41 1.44 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.15 1.52 7.61 -52.49 -0.40 1.12 16 34 H 0.06 1.23 6.68 -51.93 -0.35 0.88 16 35 H 0.08 1.98 6.58 -51.93 -0.34 1.64 16 LS Contribution 293.45 15.07 4.42 4.42 Total: -1.00 -31.82 293.45 -7.01 -38.84 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.20 Total: 3.76 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -3.06 Total: -13.41 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.41 Total: -34.09 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -1.35 Total: -19.01 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -4.23 Total: 19.49 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.82 -7.01 -38.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975726.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.599 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds