Wall clock time and date at job start Mon Mar 30 2020 23:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00077 * 2 1 4 4 H 1.48506 * 109.46921 * 267.31425 * 3 2 1 5 5 H 1.48502 * 109.47260 * 27.31293 * 3 2 1 6 6 H 1.48494 * 109.47484 * 147.31285 * 3 2 1 7 7 C 1.37868 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00055 * 353.54697 * 7 2 1 9 9 C 1.50705 * 120.00113 * 173.54156 * 7 2 1 10 10 O 1.42897 * 110.87478 * 328.67733 * 9 7 2 11 11 C 1.55142 * 110.99007 * 204.83052 * 9 7 2 12 12 C 1.54326 * 103.01740 * 206.21800 * 11 9 7 13 13 N 1.47435 * 107.23121 * 22.28661 * 12 11 9 14 14 C 1.39677 * 111.00274 * 123.25766 * 13 12 11 15 15 C 1.38931 * 120.07143 * 300.08382 * 14 13 12 16 16 C 1.38090 * 119.92049 * 180.24958 * 15 14 13 17 17 C 1.38304 * 120.07453 * 359.79211 * 16 15 14 18 18 C 1.38261 * 120.15295 * 359.97438 * 17 16 15 19 19 C 1.38122 * 120.07377 * 0.02562 * 18 17 16 20 20 N 1.48006 * 120.03873 * 179.97438 * 19 18 17 21 21 O 1.21799 * 119.99795 * 359.97438 * 20 19 18 22 22 O 1.21800 * 120.00065 * 179.72293 * 20 19 18 23 23 C 1.47850 * 108.57198 * 0.98972 * 13 12 11 24 24 H 0.97001 * 119.99869 * 0.02562 * 1 2 3 25 25 H 0.96693 * 114.00017 * 292.35977 * 10 9 7 26 26 H 1.08995 * 110.70441 * 87.84059 * 11 9 7 27 27 H 1.08994 * 110.85853 * 324.67038 * 11 9 7 28 28 H 1.08994 * 109.88526 * 262.87775 * 12 11 9 29 29 H 1.08998 * 110.02050 * 141.76853 * 12 11 9 30 30 H 1.07996 * 120.04492 * 0.03530 * 15 14 13 31 31 H 1.07998 * 119.95790 * 179.76156 * 16 15 14 32 32 H 1.08008 * 119.92040 * 179.97438 * 17 16 15 33 33 H 1.08002 * 119.96126 * 179.97438 * 18 17 16 34 34 H 1.08993 * 110.37098 * 94.73617 * 23 13 12 35 35 H 1.09002 * 110.37487 * 217.07807 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5535 2.0136 -1.3986 5 1 1.4194 2.6685 0.6424 6 1 3.5171 1.4573 0.7561 7 6 2.0045 -1.1940 0.0005 8 1 1.4697 -2.1263 0.1061 9 6 3.5044 -1.1982 -0.1463 10 8 3.9404 -0.1002 -0.9502 11 6 4.0018 -2.5467 -0.7303 12 6 5.4447 -2.6474 -0.1922 13 7 5.5264 -1.7873 1.0025 14 6 5.9493 -2.5164 2.1163 15 6 5.2046 -3.6014 2.5618 16 6 5.6229 -4.3168 3.6664 17 6 6.7838 -3.9570 4.3263 18 6 7.5298 -2.8808 3.8826 19 6 7.1173 -2.1608 2.7785 20 7 7.9161 -1.0085 2.3046 21 8 8.9377 -0.6944 2.8886 22 8 7.5544 -0.3772 1.3278 23 6 4.1983 -1.1820 1.2386 24 1 -0.4850 0.8401 -0.0004 25 1 3.6748 -0.1621 -1.8779 26 1 3.9979 -2.5196 -1.8199 27 1 3.3954 -3.3752 -0.3645 28 1 6.1477 -2.2989 -0.9488 29 1 5.6714 -3.6789 0.0773 30 1 4.2979 -3.8828 2.0471 31 1 5.0424 -5.1579 4.0156 32 1 7.1084 -4.5181 5.1902 33 1 8.4357 -2.6023 4.4006 34 1 3.6316 -1.7778 1.9541 35 1 4.3061 -0.1583 1.5971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591975726.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:41 Heat of formation + Delta-G solvation = -21.414464 kcal Electronic energy + Delta-G solvation = -22359.619945 eV Core-core repulsion = 18939.813997 eV Total energy + Delta-G solvation = -3419.805948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.09811 -41.40933 -39.49519 -37.48153 -36.79413 -34.47453 -33.11949 -32.59723 -30.17845 -29.95330 -27.36332 -26.48720 -24.20806 -23.29421 -21.92325 -21.57371 -20.14056 -19.49413 -19.34048 -18.38965 -18.05182 -17.16247 -16.84879 -16.52551 -16.12398 -15.85228 -15.47887 -14.97399 -14.74394 -14.15367 -14.02006 -13.57822 -13.54765 -13.38847 -13.14863 -12.72631 -12.54241 -12.50683 -12.28016 -12.14356 -12.05984 -11.99772 -11.94107 -11.24209 -10.70776 -10.57109 -10.34758 -10.03738 -9.47441 -8.38836 -6.50180 -1.12202 -0.09137 0.42260 0.59503 1.44590 1.49516 1.73009 2.29749 2.42204 2.63141 2.95236 3.46484 3.51110 3.69910 3.77835 3.96381 3.97845 4.04754 4.15730 4.22428 4.49075 4.51440 4.67396 4.79611 4.87419 4.91571 5.04869 5.11174 5.15434 5.31051 5.31471 5.40760 5.52171 5.75216 6.04329 6.17293 6.56669 6.70017 7.01622 7.31175 8.73300 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.006467 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.173993 B = 4328.402136 C = 4839.092203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.033 3.967 3 Si 0.997 3.003 4 H -0.281 1.281 5 H -0.338 1.338 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.219 3.781 10 O -0.559 6.559 11 C -0.145 4.145 12 C 0.060 3.940 13 N -0.506 5.506 14 C 0.139 3.861 15 C -0.161 4.161 16 C -0.041 4.041 17 C -0.109 4.109 18 C -0.055 4.055 19 C -0.060 4.060 20 N 0.031 4.969 21 O -0.197 6.197 22 O -0.161 6.161 23 C 0.071 3.929 24 H 0.267 0.733 25 H 0.380 0.620 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.182 0.818 32 H 0.192 0.808 33 H 0.167 0.833 34 H 0.063 0.937 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.117 -12.697 7.496 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.167 4.167 3 Si 0.832 3.168 4 H -0.208 1.208 5 H -0.271 1.271 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.178 3.822 10 O -0.368 6.368 11 C -0.184 4.184 12 C -0.065 4.065 13 N -0.228 5.228 14 C 0.042 3.958 15 C -0.182 4.182 16 C -0.059 4.059 17 C -0.127 4.127 18 C -0.075 4.075 19 C -0.144 4.144 20 N 0.545 4.455 21 O -0.405 6.405 22 O -0.378 6.378 23 C -0.055 4.055 24 H 0.076 0.924 25 H 0.229 0.771 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.164 0.836 31 H 0.199 0.801 32 H 0.209 0.791 33 H 0.185 0.815 34 H 0.081 0.919 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.238 -12.567 8.181 20.002 hybrid contribution -0.723 0.891 -0.737 1.363 sum 12.515 -11.676 7.444 18.664 Atomic orbital electron populations 1.70054 1.08095 1.28355 1.50380 1.25702 0.95179 1.03030 0.92818 0.84883 0.76256 0.77242 0.78409 1.20768 1.27083 1.20177 1.21451 0.90922 0.93751 1.51915 0.92721 1.20071 0.90644 0.84026 0.87459 1.86147 1.79546 1.46608 1.24503 1.23281 0.94736 0.98417 1.01959 1.22849 0.97628 0.94925 0.91106 1.61285 1.28671 1.30930 1.01864 1.19188 0.91760 0.92548 0.92288 1.22105 1.00939 0.95416 0.99692 1.22014 0.94960 0.97848 0.91088 1.21722 0.93990 0.95481 1.01506 1.21406 1.01108 0.93532 0.91414 1.21521 0.96457 0.93357 1.03113 1.43859 1.00128 1.01775 0.99734 1.94409 1.14709 1.73213 1.58195 1.94692 1.74201 1.52427 1.16481 1.23313 0.85203 0.98342 0.98623 0.92448 0.77081 0.89473 0.90543 0.90399 0.90986 0.83600 0.80066 0.79116 0.81508 0.91937 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.96 21.44 0.30 -55.64 16 2 C 0.03 1.87 5.46 84.65 0.46 2.34 16 3 Si 1.00 50.46 24.91 68.60 1.71 52.17 16 4 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.34 -17.56 7.11 99.48 0.71 -16.86 16 6 H -0.28 -14.35 5.39 99.48 0.54 -13.82 16 7 C -0.54 -28.44 8.89 25.60 0.23 -28.21 16 8 H 0.05 3.09 8.00 -2.91 -0.02 3.06 16 9 C 0.22 9.49 0.70 -10.15 -0.01 9.48 16 10 O -0.56 -24.73 8.52 -148.98 -1.27 -26.00 16 11 C -0.15 -4.95 6.11 31.78 0.19 -4.75 16 12 C 0.06 1.89 6.53 86.65 0.57 2.46 16 13 N -0.51 -18.48 3.04 -685.16 -2.08 -20.57 16 14 C 0.14 4.21 4.62 38.21 0.18 4.39 16 15 C -0.16 -3.63 7.81 22.40 0.17 -3.46 16 16 C -0.04 -0.55 10.04 22.25 0.22 -0.33 16 17 C -0.11 -1.31 10.04 22.29 0.22 -1.09 16 18 C -0.06 -1.09 9.55 22.25 0.21 -0.87 16 19 C -0.06 -1.78 6.87 36.51 0.25 -1.53 16 20 N 0.03 1.13 4.45 -46.16 -0.21 0.93 16 21 O -0.20 -6.93 18.45 18.89 0.35 -6.59 16 22 O -0.16 -6.89 17.10 18.89 0.32 -6.57 16 23 C 0.07 2.99 5.52 86.77 0.48 3.47 16 24 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 25 H 0.38 14.32 8.99 -74.06 -0.67 13.66 16 26 H 0.09 2.70 8.12 -2.39 -0.02 2.68 16 27 H 0.08 2.51 7.99 -2.39 -0.02 2.49 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 29 H 0.07 1.88 7.02 -2.39 -0.02 1.86 16 30 H 0.15 3.29 7.72 -2.91 -0.02 3.27 16 31 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 32 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 33 H 0.17 2.69 7.61 -2.91 -0.02 2.67 16 34 H 0.06 2.54 6.68 -2.39 -0.02 2.53 16 35 H 0.05 2.41 6.58 -2.39 -0.02 2.40 16 Total: -1.00 -73.36 293.45 2.60 -70.76 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.29 Total: 9.60 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 3.18 Total: -18.11 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -1.99 Total: -75.27 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -0.60 Total: -39.15 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 1.71 Total: 52.17 kcal Total: -73.36 2.60 -70.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975726.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.347 kcal (2) G-P(sol) polarization free energy of solvation -73.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds