Wall clock time and date at job start Tue Mar 31 2020 00:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99548 * 2 1 4 4 H 1.48499 * 109.47275 * 269.99989 * 3 2 1 5 5 H 1.48491 * 109.47282 * 30.00546 * 3 2 1 6 6 H 1.48507 * 109.46710 * 150.00190 * 3 2 1 7 7 C 1.37871 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99954 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00025 * 359.97438 * 7 2 1 10 10 O 1.42893 * 110.64440 * 56.85830 * 9 7 2 11 11 C 1.55162 * 110.72013 * 180.02562 * 9 7 2 12 12 C 1.54913 * 101.58208 * 154.04210 * 11 9 7 13 13 N 1.47423 * 104.83086 * 322.98649 * 12 11 9 14 14 C 1.34777 * 125.65145 * 204.09300 * 13 12 11 15 15 O 1.21590 * 120.00300 * 184.24355 * 14 13 12 16 16 C 1.47525 * 119.99630 * 4.23925 * 14 13 12 17 17 C 1.39993 * 120.59820 * 324.31160 * 16 14 13 18 18 C 1.38342 * 118.34829 * 180.02562 * 17 16 14 19 19 C 1.38351 * 119.45928 * 0.27845 * 18 17 16 20 20 N 1.31885 * 121.18248 * 359.41498 * 19 18 17 21 21 C 1.32232 * 121.80312 * 0.60385 * 20 19 18 22 22 O 1.35426 * 119.80150 * 179.72146 * 21 20 19 23 23 C 1.47025 * 108.70231 * 24.36115 * 13 12 11 24 24 H 0.96999 * 120.00278 * 359.97438 * 1 2 3 25 25 H 0.96698 * 114.00322 * 303.14969 * 10 9 7 26 26 H 1.08997 * 111.00388 * 35.96360 * 11 9 7 27 27 H 1.09000 * 111.00488 * 272.11680 * 11 9 7 28 28 H 1.09001 * 110.36432 * 204.14975 * 12 11 9 29 29 H 1.08992 * 110.45852 * 81.87404 * 12 11 9 30 30 H 1.07997 * 120.82657 * 359.97438 * 17 16 14 31 31 H 1.08001 * 120.26807 * 180.02562 * 18 17 16 32 32 H 1.07993 * 119.40983 * 179.72698 * 19 18 17 33 33 H 0.96701 * 114.00079 * 269.96898 * 22 21 20 34 34 H 1.08997 * 109.88790 * 118.13004 * 23 13 12 35 35 H 1.09002 * 109.88235 * 239.29182 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3656 -2.5696 -1.1198 11 6 2.2334 -3.7001 -0.0005 12 6 1.3742 -4.8048 0.6637 13 7 0.5907 -4.1033 1.6969 14 6 0.0658 -4.6673 2.8027 15 8 -0.6300 -4.0072 3.5502 16 6 0.3353 -6.0856 3.1062 17 6 0.4384 -7.0277 2.0757 18 6 0.6916 -8.3452 2.4132 19 6 0.8285 -8.6921 3.7454 20 7 0.7333 -7.7871 4.7000 21 6 0.4923 -6.5148 4.4325 22 8 0.3969 -5.6204 5.4449 23 6 0.4714 -2.6877 1.3180 24 1 -0.4850 0.8400 0.0004 25 1 -0.2689 -1.8415 -1.1659 26 1 3.1183 -3.4811 0.5970 27 1 2.5099 -3.9788 -1.0174 28 1 2.0140 -5.5599 1.1203 29 1 0.7106 -5.2636 -0.0692 30 1 0.3224 -6.7333 1.0432 31 1 0.7777 -9.0975 1.6430 32 1 1.0218 -9.7216 4.0082 33 1 -0.4992 -5.5135 5.7923 34 1 -0.5775 -2.4304 1.1707 35 1 0.9040 -2.0581 2.0955 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592837655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:59 Heat of formation + Delta-G solvation = -104.513128 kcal Electronic energy + Delta-G solvation = -21861.290535 eV Core-core repulsion = 18437.881159 eV Total energy + Delta-G solvation = -3423.409376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.96196 -40.51626 -38.90296 -38.10135 -36.20255 -34.19404 -33.84870 -31.94439 -31.26054 -29.65942 -27.33960 -25.71634 -24.29769 -23.89562 -21.55664 -20.95924 -19.74958 -19.19728 -18.41640 -17.94159 -17.44712 -17.01838 -16.76762 -16.39057 -16.14522 -15.68884 -14.86014 -14.80824 -14.71637 -14.56276 -14.11131 -13.88909 -13.53816 -13.47024 -13.26330 -12.87586 -12.78549 -12.52408 -12.33960 -12.30414 -12.14809 -11.35842 -11.22161 -10.98375 -10.67693 -10.50859 -10.29374 -10.03344 -9.64448 -8.30140 -6.46015 -0.40374 0.07081 1.39762 1.42264 1.51518 1.62665 1.95388 2.36043 2.47475 2.75573 2.96380 3.32491 3.68367 3.75420 3.84703 3.99254 4.07755 4.15268 4.29243 4.44297 4.49256 4.53574 4.63100 4.89903 4.95417 5.03184 5.07828 5.18013 5.32911 5.44912 5.49947 5.72525 6.00325 6.45821 6.50771 6.61937 6.80743 7.00910 7.26309 7.35690 8.76105 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030203 B = 0.004798 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.846032 B = 5834.239436 C = 6277.257910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.560 4.560 8 H 0.068 0.932 9 C 0.236 3.764 10 O -0.587 6.587 11 C -0.114 4.114 12 C 0.101 3.899 13 N -0.608 5.608 14 C 0.565 3.435 15 O -0.583 6.583 16 C -0.212 4.212 17 C -0.036 4.036 18 C -0.166 4.166 19 C 0.144 3.856 20 N -0.527 5.527 21 C 0.342 3.658 22 O -0.492 6.492 23 C 0.118 3.882 24 H 0.272 0.728 25 H 0.379 0.621 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.194 0.806 32 H 0.208 0.792 33 H 0.417 0.583 34 H 0.033 0.967 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 -17.923 1.403 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.174 4.174 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.598 4.598 8 H 0.086 0.914 9 C 0.195 3.805 10 O -0.396 6.396 11 C -0.152 4.152 12 C -0.020 4.020 13 N -0.339 5.339 14 C 0.354 3.646 15 O -0.465 6.465 16 C -0.218 4.218 17 C -0.061 4.061 18 C -0.185 4.185 19 C -0.013 4.013 20 N -0.247 5.247 21 C 0.163 3.837 22 O -0.302 6.302 23 C -0.005 4.005 24 H 0.081 0.919 25 H 0.230 0.770 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.180 0.820 31 H 0.211 0.789 32 H 0.225 0.775 33 H 0.279 0.721 34 H 0.052 0.948 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.520 -18.130 2.543 18.480 hybrid contribution -0.914 2.468 -0.268 2.645 sum 1.606 -15.662 2.275 15.908 Atomic orbital electron populations 1.69669 1.07114 1.28623 1.50312 1.25806 0.95799 1.02828 0.92976 0.85467 0.78592 0.78620 0.78470 1.19513 1.21119 1.19357 1.21873 0.94036 0.91446 1.52408 0.91420 1.19669 0.86302 0.93585 0.80931 1.86044 1.51378 1.53023 1.49175 1.22786 0.97054 0.93486 1.01877 1.22756 0.94080 0.95616 0.89539 1.48709 1.52247 1.11171 1.21798 1.18182 0.79375 0.87219 0.79793 1.90703 1.40487 1.65271 1.50057 1.20937 1.11084 0.93943 0.95872 1.22324 0.91333 0.92956 0.99530 1.22595 1.00616 0.96294 0.99006 1.23601 0.90106 0.99420 0.88201 1.67373 1.16029 1.01045 1.40215 1.19240 0.92739 0.86516 0.85195 1.84588 1.36341 1.58219 1.51006 1.22616 0.99415 0.79364 0.99104 0.91890 0.77023 0.90187 0.88449 0.88204 0.89331 0.81982 0.78875 0.77543 0.72145 0.94821 0.94969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.76 10.97 21.45 0.24 -49.52 16 2 C 0.03 1.39 5.28 84.65 0.45 1.84 16 3 Si 0.96 42.02 29.54 68.60 2.03 44.05 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.56 -29.24 8.12 25.60 0.21 -29.03 16 8 H 0.07 3.44 7.76 -2.91 -0.02 3.42 16 9 C 0.24 11.27 0.86 -10.35 -0.01 11.26 16 10 O -0.59 -29.11 13.07 -148.98 -1.95 -31.06 16 11 C -0.11 -4.23 6.23 31.99 0.20 -4.03 16 12 C 0.10 3.18 5.14 86.86 0.45 3.62 16 13 N -0.61 -24.89 3.33 -815.53 -2.71 -27.60 16 14 C 0.56 23.13 7.41 86.69 0.64 23.77 16 15 O -0.58 -28.31 16.32 12.59 0.21 -28.10 16 16 C -0.21 -6.55 5.55 -19.91 -0.11 -6.66 16 17 C -0.04 -0.75 8.02 22.72 0.18 -0.56 16 18 C -0.17 -2.17 10.09 22.32 0.23 -1.94 16 19 C 0.14 2.22 11.17 84.71 0.95 3.17 16 20 N -0.53 -13.35 10.37 -308.01 -3.19 -16.55 16 21 C 0.34 10.54 7.74 85.13 0.66 11.20 16 22 O -0.49 -16.31 12.23 -70.63 -0.86 -17.18 16 23 C 0.12 5.89 5.54 86.73 0.48 6.37 16 24 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 25 H 0.38 19.92 6.98 -74.06 -0.52 19.40 16 26 H 0.08 2.90 8.03 -2.39 -0.02 2.88 16 27 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 28 H 0.10 2.46 6.57 -2.39 -0.02 2.44 16 29 H 0.09 2.45 7.26 -2.39 -0.02 2.43 16 30 H 0.16 2.93 5.51 -2.91 -0.02 2.91 16 31 H 0.19 0.71 8.06 -2.91 -0.02 0.69 16 32 H 0.21 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.42 10.90 9.06 -74.06 -0.67 10.23 16 34 H 0.03 1.86 8.07 -2.39 -0.02 1.84 16 35 H 0.03 1.79 7.82 -2.39 -0.02 1.77 16 Total: -1.00 -72.36 297.91 -1.97 -74.33 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.03 Total: 32.62 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 4.32 Total: 19.01 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -5.67 Total: -93.67 kcal Atomic # 8 Polarization: -73.73 SS G_CDS: -2.61 Total: -76.34 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -72.36 -1.97 -74.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.183 kcal (2) G-P(sol) polarization free energy of solvation -72.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds