Wall clock time and date at job start Tue Mar 31 2020 00:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99788 * 2 1 4 4 H 1.48502 * 109.47223 * 274.97110 * 3 2 1 5 5 H 1.48498 * 109.47494 * 34.97519 * 3 2 1 6 6 H 1.48506 * 109.47115 * 154.96999 * 3 2 1 7 7 C 1.37869 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00062 * 174.24994 * 7 2 1 9 9 C 1.50700 * 120.00235 * 354.53199 * 7 2 1 10 10 O 1.42907 * 110.88633 * 63.86653 * 9 7 2 11 11 C 1.55154 * 111.00988 * 187.75069 * 9 7 2 12 12 C 1.54327 * 102.94515 * 153.57606 * 11 9 7 13 13 N 1.47019 * 107.26962 * 337.80411 * 12 11 9 14 14 C 1.34777 * 125.65100 * 178.97280 * 13 12 11 15 15 O 1.21577 * 120.00309 * 185.75049 * 14 13 12 16 16 C 1.47620 * 119.99326 * 5.75224 * 14 13 12 17 17 C 1.40280 * 120.50278 * 352.89690 * 16 14 13 18 18 C 1.37958 * 118.36045 * 179.75440 * 17 16 14 19 19 C 1.39168 * 119.25893 * 0.50101 * 18 17 16 20 20 O 1.35492 * 119.52461 * 179.73884 * 19 18 17 21 21 N 1.32415 * 120.94901 * 359.76174 * 19 18 17 22 22 C 1.31664 * 121.79803 * 359.97438 * 21 19 18 23 23 C 1.47471 * 108.72209 * 358.98153 * 13 12 11 24 24 H 0.97004 * 120.00094 * 0.02562 * 1 2 3 25 25 H 0.96696 * 113.99699 * 294.32420 * 10 9 7 26 26 H 1.09003 * 110.71876 * 271.94281 * 11 9 7 27 27 H 1.08997 * 110.71826 * 35.03156 * 11 9 7 28 28 H 1.08991 * 109.88222 * 97.22435 * 12 11 9 29 29 H 1.09006 * 109.87764 * 218.39004 * 12 11 9 30 30 H 1.08006 * 120.81697 * 359.97438 * 17 16 14 31 31 H 1.07999 * 120.36603 * 180.21452 * 18 17 16 32 32 H 0.96699 * 114.00362 * 270.02263 * 20 19 18 33 33 H 1.07996 * 119.68068 * 180.02562 * 22 21 19 34 34 H 1.09002 * 110.34525 * 265.24484 * 23 13 12 35 35 H 1.09001 * 110.40560 * 142.91511 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3915 2.1071 -1.3948 5 1 1.5031 2.6201 0.8025 6 1 3.5953 1.4122 0.5924 7 6 2.0046 -1.1940 0.0005 8 1 3.0805 -1.1964 -0.0932 9 6 1.2563 -2.4961 0.1255 10 8 0.3962 -2.6992 -0.9976 11 6 2.2363 -3.6865 0.2980 12 6 1.3882 -4.7244 1.0630 13 7 0.3080 -3.9919 1.7398 14 6 -0.6606 -4.5436 2.4973 15 8 -1.5656 -3.8532 2.9246 16 6 -0.6226 -5.9862 2.8082 17 6 0.3289 -6.8203 2.2025 18 6 0.3278 -8.1607 2.5290 19 6 -0.6157 -8.6399 3.4327 20 8 -0.6250 -9.9564 3.7531 21 7 -1.5049 -7.8279 3.9836 22 6 -1.5363 -6.5416 3.7045 23 6 0.4593 -2.5534 1.4526 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3258 -2.0592 -1.0608 26 1 2.5421 -4.0780 -0.6723 27 1 3.1060 -3.3882 0.8833 28 1 0.9656 -5.4456 0.3636 29 1 2.0064 -5.2376 1.7997 30 1 1.0468 -6.4222 1.5007 31 1 1.0483 -8.8314 2.0846 32 1 -1.1853 -10.4969 3.1796 33 1 -2.2762 -5.9104 4.1741 34 1 1.0168 -2.0640 2.2513 35 1 -0.5175 -2.0857 1.3290 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:19 Heat of formation + Delta-G solvation = -60.703092 kcal Electronic energy + Delta-G solvation = -21599.387848 eV Core-core repulsion = 18177.878217 eV Total energy + Delta-G solvation = -3421.509631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83214 -39.33631 -37.49145 -36.87662 -34.61807 -32.72105 -32.29600 -30.77806 -30.02801 -28.08186 -25.57387 -24.35965 -23.54674 -22.40205 -19.97406 -19.59378 -18.99885 -17.34227 -17.06746 -16.65224 -16.14476 -15.38682 -15.23724 -15.04496 -14.55654 -14.37259 -13.72897 -13.60835 -13.24821 -13.02817 -12.79464 -12.72190 -12.09325 -11.99233 -11.58612 -11.43792 -11.10003 -10.88389 -10.71681 -10.50125 -10.30434 -10.06193 -9.91472 -9.46168 -9.34712 -9.06271 -8.75986 -8.42947 -7.95400 -6.34033 -4.42871 0.51443 1.05340 2.92270 3.16751 3.25726 3.27987 3.35364 3.49767 3.81933 4.22287 4.46660 4.67576 4.76958 4.83457 4.93346 5.10526 5.19724 5.41158 5.50996 5.59720 5.75116 5.81845 5.90381 6.03873 6.28848 6.35645 6.59677 6.71217 6.81435 7.12558 7.21986 7.25630 7.67985 7.69044 7.95476 8.02166 8.52253 8.60979 9.22805 9.33715 10.73694 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.039621 B = 0.004216 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.524018 B = 6639.484501 C = 7014.743753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.120 4.120 12 C 0.091 3.909 13 N -0.601 5.601 14 C 0.568 3.432 15 O -0.542 6.542 16 C -0.183 4.183 17 C -0.065 4.065 18 C -0.193 4.193 19 C 0.321 3.679 20 O -0.483 6.483 21 N -0.509 5.509 22 C 0.180 3.820 23 C 0.093 3.907 24 H 0.271 0.729 25 H 0.382 0.618 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.178 0.822 31 H 0.145 0.855 32 H 0.402 0.598 33 H 0.174 0.826 34 H 0.065 0.935 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 -13.977 2.423 14.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.158 4.158 12 C -0.031 4.031 13 N -0.332 5.332 14 C 0.355 3.645 15 O -0.421 6.421 16 C -0.188 4.188 17 C -0.090 4.090 18 C -0.214 4.214 19 C 0.142 3.858 20 O -0.291 6.291 21 N -0.228 5.228 22 C 0.022 3.978 23 C -0.028 4.028 24 H 0.081 0.919 25 H 0.232 0.768 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.195 0.805 31 H 0.163 0.837 32 H 0.260 0.740 33 H 0.191 0.809 34 H 0.083 0.917 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.132 -14.254 3.606 14.746 hybrid contribution 0.328 1.395 -0.717 1.602 sum 1.460 -12.859 2.890 13.260 Atomic orbital electron populations 1.69694 1.06062 1.28017 1.49136 1.25067 0.94999 0.99787 0.93253 0.86404 0.79898 0.82515 0.78200 1.20467 1.20907 1.19613 1.21432 0.94056 0.90067 1.52237 0.91454 1.19639 0.86110 0.91484 0.81948 1.86105 1.45343 1.58737 1.48990 1.22699 0.97919 0.95562 0.99637 1.22487 0.89337 0.95975 0.95339 1.48652 1.26443 1.10761 1.47375 1.17543 0.81740 0.86029 0.79144 1.90775 1.34385 1.63048 1.53934 1.21159 0.99720 0.95541 1.02424 1.23261 0.96494 0.92665 0.96597 1.22099 1.02296 0.97042 0.99967 1.19479 0.90929 0.85312 0.90063 1.84710 1.70081 1.14221 1.60078 1.67269 1.24521 1.05437 1.25532 1.22764 0.94732 0.89022 0.91307 1.23368 1.03101 0.76814 0.99547 0.91933 0.76754 0.90416 0.90047 0.91132 0.91656 0.80532 0.83701 0.74004 0.80901 0.91721 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.11 10.78 55.43 0.60 -22.51 16 2 C 0.07 1.84 5.27 -17.82 -0.09 1.74 16 3 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.54 -13.47 8.27 -34.44 -0.28 -13.76 16 8 H 0.07 1.65 7.80 -52.48 -0.41 1.24 16 9 C 0.25 5.68 0.87 -89.63 -0.08 5.60 16 10 O -0.58 -14.15 13.16 -35.23 -0.46 -14.61 16 11 C -0.12 -2.17 6.13 -24.90 -0.15 -2.32 16 12 C 0.09 1.42 4.86 -3.06 -0.01 1.41 16 13 N -0.60 -11.61 3.33 -172.80 -0.57 -12.18 16 14 C 0.57 10.95 7.81 -12.43 -0.10 10.85 16 15 O -0.54 -12.23 16.61 5.30 0.09 -12.14 16 16 C -0.18 -2.83 5.89 -104.82 -0.62 -3.45 16 17 C -0.07 -0.81 8.68 -38.92 -0.34 -1.15 16 18 C -0.19 -2.09 10.02 -39.34 -0.39 -2.48 16 19 C 0.32 3.93 7.74 -16.95 -0.13 3.80 16 20 O -0.48 -4.83 13.55 -18.17 -0.25 -5.07 16 21 N -0.51 -7.30 10.37 -12.97 -0.13 -7.44 16 22 C 0.18 2.67 10.76 -17.14 -0.18 2.49 16 23 C 0.09 2.11 5.42 -2.51 -0.01 2.09 16 24 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 25 H 0.38 9.62 7.54 45.56 0.34 9.97 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 28 H 0.07 0.99 6.74 -51.93 -0.35 0.64 16 29 H 0.07 0.83 6.73 -51.93 -0.35 0.48 16 30 H 0.18 1.98 2.90 -53.94 -0.16 1.82 16 31 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.40 1.89 9.06 45.56 0.41 2.30 16 33 H 0.17 2.47 7.67 -52.49 -0.40 2.06 16 34 H 0.06 1.51 8.03 -51.93 -0.42 1.10 16 35 H 0.09 2.31 7.34 -51.93 -0.38 1.92 16 LS Contribution 296.73 15.07 4.47 4.47 Total: -1.00 -30.61 296.73 -5.79 -36.40 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -2.11 Total: 13.48 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -2.40 Total: 4.83 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.11 Total: -42.13 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.62 Total: -31.82 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.61 -5.79 -36.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.302 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds