Wall clock time and date at job start Tue Mar 31 2020 00:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99788 * 2 1 4 4 H 1.48502 * 109.47223 * 274.97110 * 3 2 1 5 5 H 1.48498 * 109.47494 * 34.97519 * 3 2 1 6 6 H 1.48506 * 109.47115 * 154.96999 * 3 2 1 7 7 C 1.37869 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00062 * 174.24994 * 7 2 1 9 9 C 1.50700 * 120.00235 * 354.53199 * 7 2 1 10 10 O 1.42907 * 110.88633 * 63.86653 * 9 7 2 11 11 C 1.55154 * 111.00988 * 187.75069 * 9 7 2 12 12 C 1.54327 * 102.94515 * 153.57606 * 11 9 7 13 13 N 1.47019 * 107.26962 * 337.80411 * 12 11 9 14 14 C 1.34777 * 125.65100 * 178.97280 * 13 12 11 15 15 O 1.21577 * 120.00309 * 185.75049 * 14 13 12 16 16 C 1.47620 * 119.99326 * 5.75224 * 14 13 12 17 17 C 1.40280 * 120.50278 * 352.89690 * 16 14 13 18 18 C 1.37958 * 118.36045 * 179.75440 * 17 16 14 19 19 C 1.39168 * 119.25893 * 0.50101 * 18 17 16 20 20 O 1.35492 * 119.52461 * 179.73884 * 19 18 17 21 21 N 1.32415 * 120.94901 * 359.76174 * 19 18 17 22 22 C 1.31664 * 121.79803 * 359.97438 * 21 19 18 23 23 C 1.47471 * 108.72209 * 358.98153 * 13 12 11 24 24 H 0.97004 * 120.00094 * 0.02562 * 1 2 3 25 25 H 0.96696 * 113.99699 * 294.32420 * 10 9 7 26 26 H 1.09003 * 110.71876 * 271.94281 * 11 9 7 27 27 H 1.08997 * 110.71826 * 35.03156 * 11 9 7 28 28 H 1.08991 * 109.88222 * 97.22435 * 12 11 9 29 29 H 1.09006 * 109.87764 * 218.39004 * 12 11 9 30 30 H 1.08006 * 120.81697 * 359.97438 * 17 16 14 31 31 H 1.07999 * 120.36603 * 180.21452 * 18 17 16 32 32 H 0.96699 * 114.00362 * 270.02263 * 20 19 18 33 33 H 1.07996 * 119.68068 * 180.02562 * 22 21 19 34 34 H 1.09002 * 110.34525 * 265.24484 * 23 13 12 35 35 H 1.09001 * 110.40560 * 142.91511 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3915 2.1071 -1.3948 5 1 1.5031 2.6201 0.8025 6 1 3.5953 1.4122 0.5924 7 6 2.0046 -1.1940 0.0005 8 1 3.0805 -1.1964 -0.0932 9 6 1.2563 -2.4961 0.1255 10 8 0.3962 -2.6992 -0.9976 11 6 2.2363 -3.6865 0.2980 12 6 1.3882 -4.7244 1.0630 13 7 0.3080 -3.9919 1.7398 14 6 -0.6606 -4.5436 2.4973 15 8 -1.5656 -3.8532 2.9246 16 6 -0.6226 -5.9862 2.8082 17 6 0.3289 -6.8203 2.2025 18 6 0.3278 -8.1607 2.5290 19 6 -0.6157 -8.6399 3.4327 20 8 -0.6250 -9.9564 3.7531 21 7 -1.5049 -7.8279 3.9836 22 6 -1.5363 -6.5416 3.7045 23 6 0.4593 -2.5534 1.4526 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3258 -2.0592 -1.0608 26 1 2.5421 -4.0780 -0.6723 27 1 3.1060 -3.3882 0.8833 28 1 0.9656 -5.4456 0.3636 29 1 2.0064 -5.2376 1.7997 30 1 1.0468 -6.4222 1.5007 31 1 1.0483 -8.8314 2.0846 32 1 -1.1853 -10.4969 3.1796 33 1 -2.2762 -5.9104 4.1741 34 1 1.0168 -2.0640 2.2513 35 1 -0.5175 -2.0857 1.3290 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:19 Heat of formation + Delta-G solvation = -87.880827 kcal Electronic energy + Delta-G solvation = -21600.566363 eV Core-core repulsion = 18177.878217 eV Total energy + Delta-G solvation = -3422.688146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.97651 -40.66799 -38.97691 -37.92451 -36.27313 -34.22859 -33.85050 -32.08000 -31.32435 -29.69059 -27.28063 -25.64789 -24.67106 -23.68905 -21.56117 -21.06079 -19.90106 -19.07403 -18.43139 -17.85877 -17.12719 -17.05381 -16.83749 -16.44038 -16.19181 -15.43994 -15.09112 -14.91766 -14.79590 -14.55787 -14.12505 -13.97184 -13.44062 -13.39157 -13.15090 -12.87803 -12.86048 -12.40551 -12.23080 -12.20189 -12.10224 -11.29511 -11.16532 -11.07607 -10.68990 -10.46252 -10.28424 -10.10942 -9.52983 -8.25093 -6.40618 -0.53470 0.08910 1.41819 1.45420 1.54605 1.67664 1.94693 2.39155 2.49003 2.71873 3.02097 3.36787 3.59069 3.70732 3.77616 3.90523 4.07498 4.14985 4.23023 4.37336 4.48429 4.61905 4.70745 4.83377 4.92463 5.02918 5.06912 5.22532 5.34458 5.41417 5.48763 5.76266 6.08973 6.49312 6.55903 6.68281 6.76983 7.03404 7.27790 7.37357 8.80586 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.039621 B = 0.004216 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.524018 B = 6639.484501 C = 7014.743753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.114 4.114 12 C 0.090 3.910 13 N -0.605 5.605 14 C 0.563 3.437 15 O -0.591 6.591 16 C -0.202 4.202 17 C -0.055 4.055 18 C -0.175 4.175 19 C 0.326 3.674 20 O -0.486 6.486 21 N -0.531 5.531 22 C 0.175 3.825 23 C 0.106 3.894 24 H 0.268 0.732 25 H 0.373 0.627 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.195 0.805 31 H 0.187 0.813 32 H 0.426 0.574 33 H 0.164 0.836 34 H 0.048 0.952 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 -16.678 2.090 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.174 4.174 3 Si 0.786 3.214 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.089 0.911 9 C 0.190 3.810 10 O -0.395 6.395 11 C -0.152 4.152 12 C -0.031 4.031 13 N -0.336 5.336 14 C 0.353 3.647 15 O -0.474 6.474 16 C -0.207 4.207 17 C -0.079 4.079 18 C -0.196 4.196 19 C 0.147 3.853 20 O -0.297 6.297 21 N -0.250 5.250 22 C 0.017 3.983 23 C -0.017 4.017 24 H 0.078 0.922 25 H 0.221 0.779 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.211 0.789 31 H 0.204 0.796 32 H 0.289 0.711 33 H 0.181 0.819 34 H 0.067 0.933 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.341 -17.014 3.252 17.641 hybrid contribution -0.365 2.096 -0.596 2.210 sum 2.976 -14.917 2.655 15.441 Atomic orbital electron populations 1.69818 1.07238 1.28345 1.49997 1.25798 0.95646 1.02774 0.93151 0.85506 0.78984 0.78938 0.78004 1.20275 1.21346 1.18699 1.21812 0.94423 0.91317 1.51809 0.91132 1.19899 0.86711 0.93196 0.81171 1.86094 1.45218 1.58340 1.49826 1.22709 0.97390 0.94013 1.01085 1.22798 0.88465 0.95409 0.96434 1.48666 1.27595 1.09589 1.47747 1.18177 0.80763 0.87593 0.78142 1.90737 1.36251 1.64646 1.55724 1.20803 1.02074 0.93257 1.04557 1.23385 0.95513 0.92980 0.96058 1.22432 1.01926 0.96582 0.98618 1.19795 0.90294 0.85968 0.89237 1.84667 1.70785 1.13230 1.61038 1.67276 1.25908 1.05175 1.26623 1.22616 0.94745 0.89420 0.91524 1.22893 1.00464 0.78988 0.99342 0.92248 0.77868 0.88985 0.88857 0.88784 0.87447 0.78872 0.79554 0.71122 0.81886 0.93321 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.21 10.78 21.44 0.23 -48.98 16 2 C 0.03 1.40 5.27 84.65 0.45 1.85 16 3 Si 0.96 40.94 29.54 68.60 2.03 42.97 16 4 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.56 -27.82 8.27 25.60 0.21 -27.61 16 8 H 0.07 3.40 7.80 -2.91 -0.02 3.38 16 9 C 0.23 10.54 0.87 -10.15 -0.01 10.53 16 10 O -0.59 -28.86 13.16 -148.98 -1.96 -30.82 16 11 C -0.11 -3.84 6.13 31.78 0.19 -3.65 16 12 C 0.09 2.52 4.86 86.73 0.42 2.94 16 13 N -0.61 -23.23 3.33 -818.87 -2.72 -25.95 16 14 C 0.56 22.04 7.81 86.72 0.68 22.72 16 15 O -0.59 -28.16 16.61 -3.96 -0.07 -28.22 16 16 C -0.20 -5.99 5.89 -19.99 -0.12 -6.11 16 17 C -0.05 -1.16 8.68 22.70 0.20 -0.96 16 18 C -0.18 -2.92 10.02 22.43 0.22 -2.70 16 19 C 0.33 6.83 7.74 84.83 0.66 7.48 16 20 O -0.49 -7.74 13.55 -87.93 -1.19 -8.94 16 21 N -0.53 -14.36 10.37 -307.82 -3.19 -17.55 16 22 C 0.18 5.15 10.76 85.03 0.91 6.07 16 23 C 0.11 4.97 5.42 86.85 0.47 5.45 16 24 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 25 H 0.37 19.55 7.54 -74.06 -0.56 18.99 16 26 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.09 2.89 8.03 -2.39 -0.02 2.87 16 28 H 0.09 2.25 6.74 -2.39 -0.02 2.23 16 29 H 0.11 2.18 6.73 -2.38 -0.02 2.17 16 30 H 0.20 3.34 2.90 -4.28 -0.01 3.32 16 31 H 0.19 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.43 2.22 9.06 -74.06 -0.67 1.55 16 33 H 0.16 4.92 7.67 -2.91 -0.02 4.90 16 34 H 0.05 2.38 8.03 -2.39 -0.02 2.36 16 35 H 0.05 2.58 7.34 -2.39 -0.02 2.56 16 Total: -1.00 -69.54 296.73 -2.66 -72.19 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.07 Total: 29.27 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 4.29 Total: 16.02 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -5.69 Total: -92.47 kcal Atomic # 8 Polarization: -64.76 SS G_CDS: -3.22 Total: -67.97 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -69.54 -2.66 -72.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.688 kcal (2) G-P(sol) polarization free energy of solvation -69.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds