Wall clock time and date at job start Tue Mar 31 2020 00:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99965 * 2 1 4 4 H 1.48506 * 109.47238 * 264.99252 * 3 2 1 5 5 H 1.48494 * 109.47266 * 24.99417 * 3 2 1 6 6 H 1.48508 * 109.46927 * 144.99544 * 3 2 1 7 7 C 1.37878 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00013 * 184.51692 * 7 2 1 9 9 C 1.50706 * 120.00024 * 4.51830 * 7 2 1 10 10 O 1.42891 * 110.88504 * 307.59484 * 9 7 2 11 11 C 1.55149 * 111.00384 * 183.71225 * 9 7 2 12 12 C 1.54321 * 102.94383 * 206.38761 * 11 9 7 13 13 N 1.47022 * 107.26999 * 22.19669 * 12 11 9 14 14 C 1.34778 * 125.64649 * 180.79827 * 13 12 11 15 15 O 1.21585 * 120.00012 * 174.39409 * 14 13 12 16 16 C 1.47611 * 119.99864 * 354.39036 * 14 13 12 17 17 C 1.40278 * 120.50106 * 7.15576 * 16 14 13 18 18 C 1.37958 * 118.35602 * 179.75134 * 17 16 14 19 19 C 1.39169 * 119.26711 * 0.48173 * 18 17 16 20 20 O 1.35494 * 119.53159 * 179.76349 * 19 18 17 21 21 N 1.32406 * 120.94123 * 359.78404 * 19 18 17 22 22 C 1.31662 * 121.80412 * 359.97438 * 21 19 18 23 23 C 1.47422 * 108.70410 * 1.05759 * 13 12 11 24 24 H 0.97001 * 119.99325 * 0.02562 * 1 2 3 25 25 H 0.96708 * 114.00072 * 56.12094 * 10 9 7 26 26 H 1.09004 * 110.72088 * 88.02574 * 11 9 7 27 27 H 1.09006 * 110.72265 * 324.75611 * 11 9 7 28 28 H 1.08999 * 109.88056 * 262.77789 * 12 11 9 29 29 H 1.09000 * 110.01266 * 141.68249 * 12 11 9 30 30 H 1.07999 * 120.82049 * 0.02562 * 17 16 14 31 31 H 1.08008 * 120.36894 * 180.24113 * 18 17 16 32 32 H 0.96707 * 113.99772 * 270.02281 * 20 19 18 33 33 H 1.08001 * 119.68509 * 179.97438 * 22 21 19 34 34 H 1.09000 * 110.36625 * 94.71325 * 23 13 12 35 35 H 1.09000 * 110.36825 * 217.03449 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6025 1.9853 -1.3948 5 1 1.3978 2.6809 0.5915 6 1 3.4899 1.4729 0.8032 7 6 2.0045 -1.1941 0.0005 8 1 3.0819 -1.1956 0.0742 9 6 1.2545 -2.4972 -0.1017 10 8 0.2245 -2.5710 0.8860 11 6 2.2210 -3.7056 0.0113 12 6 1.4788 -4.8155 -0.7623 13 7 0.5352 -4.1546 -1.6758 14 6 -0.3128 -4.7799 -2.5164 15 8 -1.1220 -4.1348 -3.1546 16 6 -0.2589 -6.2478 -2.6623 17 6 0.5637 -7.0167 -1.8257 18 6 0.5761 -8.3855 -1.9973 19 6 -0.2133 -8.9536 -2.9928 20 8 -0.2016 -10.2969 -3.1691 21 7 -0.9753 -8.2000 -3.7703 22 6 -1.0211 -6.8908 -3.6382 23 6 0.6746 -2.6948 -1.5246 24 1 -0.4849 0.8401 -0.0004 25 1 -0.4041 -1.8368 0.8545 26 1 2.3620 -3.9905 1.0540 27 1 3.1774 -3.4799 -0.4606 28 1 0.9351 -5.4531 -0.0653 29 1 2.1904 -5.4125 -1.3327 30 1 1.1690 -6.5491 -1.0633 31 1 1.1945 -9.0091 -1.3686 32 1 0.4681 -10.6057 -3.7946 33 1 -1.6545 -6.3091 -4.2915 34 1 1.3619 -2.2999 -2.2726 35 1 -0.2981 -2.2102 -1.6085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:22 Heat of formation + Delta-G solvation = -60.564030 kcal Electronic energy + Delta-G solvation = -21576.115335 eV Core-core repulsion = 18154.611734 eV Total energy + Delta-G solvation = -3421.503601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83412 -39.33422 -37.48232 -36.87870 -34.64961 -32.74381 -32.15451 -30.78776 -30.02394 -28.15676 -25.58254 -24.36481 -23.55267 -22.39111 -19.95739 -19.57615 -18.99913 -17.41863 -17.11783 -16.63720 -16.16485 -15.30975 -15.24602 -15.03512 -14.60042 -14.35983 -13.80934 -13.49741 -13.18807 -13.03778 -12.94349 -12.60690 -12.11310 -12.00612 -11.53151 -11.47532 -11.11755 -10.82722 -10.72164 -10.54992 -10.25975 -10.06340 -9.92956 -9.52278 -9.35023 -9.07305 -8.74539 -8.47355 -7.93052 -6.37499 -4.46700 0.51273 1.05307 2.92423 3.15901 3.23875 3.25370 3.34070 3.49744 3.80827 4.19595 4.46792 4.67346 4.77036 4.83491 4.89967 5.10720 5.20771 5.40842 5.50995 5.61550 5.75694 5.87444 5.90850 6.03955 6.28913 6.35566 6.58396 6.69246 6.79780 7.12109 7.21857 7.23397 7.67599 7.68907 7.89805 8.01235 8.50876 8.57057 9.23338 9.50594 10.70086 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040663 B = 0.004157 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.420255 B = 6733.323156 C = 7090.410524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.586 6.586 11 C -0.121 4.121 12 C 0.092 3.908 13 N -0.599 5.599 14 C 0.568 3.432 15 O -0.543 6.543 16 C -0.183 4.183 17 C -0.065 4.065 18 C -0.193 4.193 19 C 0.321 3.679 20 O -0.483 6.483 21 N -0.509 5.509 22 C 0.180 3.820 23 C 0.089 3.911 24 H 0.274 0.726 25 H 0.391 0.609 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.178 0.822 31 H 0.145 0.855 32 H 0.401 0.599 33 H 0.174 0.826 34 H 0.065 0.935 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 -13.582 -3.347 14.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.087 0.913 9 C 0.209 3.791 10 O -0.399 6.399 11 C -0.159 4.159 12 C -0.031 4.031 13 N -0.330 5.330 14 C 0.356 3.644 15 O -0.422 6.422 16 C -0.188 4.188 17 C -0.090 4.090 18 C -0.214 4.214 19 C 0.142 3.858 20 O -0.290 6.290 21 N -0.228 5.228 22 C 0.022 3.978 23 C -0.032 4.032 24 H 0.084 0.916 25 H 0.246 0.754 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.195 0.805 31 H 0.163 0.837 32 H 0.260 0.740 33 H 0.191 0.809 34 H 0.083 0.917 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.221 -14.142 -3.784 14.989 hybrid contribution 0.948 1.581 0.070 1.844 sum 4.168 -12.561 -3.714 13.746 Atomic orbital electron populations 1.69325 1.06181 1.28221 1.49797 1.25079 0.94993 0.99917 0.93156 0.86363 0.79681 0.82071 0.78487 1.20256 1.20969 1.19675 1.21502 0.94016 0.90148 1.52043 0.91347 1.19572 0.84849 0.91639 0.83031 1.86039 1.43613 1.53416 1.56840 1.22717 0.98500 0.94828 0.99846 1.22491 0.91754 0.96694 0.92149 1.48585 1.36822 1.09839 1.37760 1.17554 0.80915 0.85924 0.80054 1.90774 1.37220 1.66945 1.47298 1.21150 1.01967 0.95380 1.00327 1.23266 0.95040 0.93396 0.97307 1.22104 1.01980 0.95707 1.01610 1.19478 0.90881 0.84107 0.91309 1.84720 1.61646 1.16109 1.66566 1.67262 1.20925 1.06864 1.27708 1.22761 0.93362 0.88079 0.93629 1.23432 1.02490 0.76245 1.01067 0.91605 0.75387 0.90311 0.90217 0.91114 0.91710 0.80517 0.83691 0.74048 0.80905 0.91702 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.23 10.94 55.43 0.61 -22.62 16 2 C 0.07 1.80 5.34 -17.82 -0.10 1.70 16 3 Si 0.91 19.69 29.54 -169.99 -5.02 14.67 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.54 -13.41 8.24 -34.44 -0.28 -13.69 16 8 H 0.07 1.65 7.75 -52.49 -0.41 1.24 16 9 C 0.25 5.76 0.90 -89.62 -0.08 5.68 16 10 O -0.59 -14.69 13.17 -35.23 -0.46 -15.15 16 11 C -0.12 -2.19 6.13 -24.90 -0.15 -2.34 16 12 C 0.09 1.44 4.87 -3.07 -0.01 1.42 16 13 N -0.60 -11.59 3.33 -172.81 -0.57 -12.17 16 14 C 0.57 10.97 7.80 -12.43 -0.10 10.87 16 15 O -0.54 -12.26 16.62 5.29 0.09 -12.17 16 16 C -0.18 -2.83 5.89 -104.83 -0.62 -3.45 16 17 C -0.07 -0.82 8.68 -38.92 -0.34 -1.15 16 18 C -0.19 -2.09 10.02 -39.34 -0.39 -2.49 16 19 C 0.32 3.94 7.74 -16.96 -0.13 3.80 16 20 O -0.48 -4.83 13.55 -18.17 -0.25 -5.07 16 21 N -0.51 -7.31 10.37 -12.97 -0.13 -7.44 16 22 C 0.18 2.67 10.76 -17.14 -0.18 2.49 16 23 C 0.09 2.02 5.89 -2.53 -0.01 2.00 16 24 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 25 H 0.39 10.29 6.50 45.56 0.30 10.59 16 26 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 27 H 0.08 1.33 8.00 -51.93 -0.42 0.91 16 28 H 0.07 1.02 6.74 -51.93 -0.35 0.67 16 29 H 0.07 0.80 6.72 -51.93 -0.35 0.45 16 30 H 0.18 1.99 2.90 -53.91 -0.16 1.83 16 31 H 0.15 1.14 8.06 -52.48 -0.42 0.71 16 32 H 0.40 1.84 9.06 45.56 0.41 2.26 16 33 H 0.17 2.46 7.67 -52.49 -0.40 2.06 16 34 H 0.06 1.48 8.03 -51.93 -0.42 1.06 16 35 H 0.08 2.11 7.99 -51.93 -0.41 1.69 16 LS Contribution 296.97 15.07 4.48 4.48 Total: -1.00 -30.70 296.97 -5.86 -36.56 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -2.18 Total: 14.07 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -2.40 Total: 4.86 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.10 Total: -42.23 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.62 Total: -32.40 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.70 -5.86 -36.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.005 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds