Wall clock time and date at job start Tue Mar 31 2020 00:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99965 * 2 1 4 4 H 1.48506 * 109.47238 * 264.99252 * 3 2 1 5 5 H 1.48494 * 109.47266 * 24.99417 * 3 2 1 6 6 H 1.48508 * 109.46927 * 144.99544 * 3 2 1 7 7 C 1.37878 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00013 * 184.51692 * 7 2 1 9 9 C 1.50706 * 120.00024 * 4.51830 * 7 2 1 10 10 O 1.42891 * 110.88504 * 307.59484 * 9 7 2 11 11 C 1.55149 * 111.00384 * 183.71225 * 9 7 2 12 12 C 1.54321 * 102.94383 * 206.38761 * 11 9 7 13 13 N 1.47022 * 107.26999 * 22.19669 * 12 11 9 14 14 C 1.34778 * 125.64649 * 180.79827 * 13 12 11 15 15 O 1.21585 * 120.00012 * 174.39409 * 14 13 12 16 16 C 1.47611 * 119.99864 * 354.39036 * 14 13 12 17 17 C 1.40278 * 120.50106 * 7.15576 * 16 14 13 18 18 C 1.37958 * 118.35602 * 179.75134 * 17 16 14 19 19 C 1.39169 * 119.26711 * 0.48173 * 18 17 16 20 20 O 1.35494 * 119.53159 * 179.76349 * 19 18 17 21 21 N 1.32406 * 120.94123 * 359.78404 * 19 18 17 22 22 C 1.31662 * 121.80412 * 359.97438 * 21 19 18 23 23 C 1.47422 * 108.70410 * 1.05759 * 13 12 11 24 24 H 0.97001 * 119.99325 * 0.02562 * 1 2 3 25 25 H 0.96708 * 114.00072 * 56.12094 * 10 9 7 26 26 H 1.09004 * 110.72088 * 88.02574 * 11 9 7 27 27 H 1.09006 * 110.72265 * 324.75611 * 11 9 7 28 28 H 1.08999 * 109.88056 * 262.77789 * 12 11 9 29 29 H 1.09000 * 110.01266 * 141.68249 * 12 11 9 30 30 H 1.07999 * 120.82049 * 0.02562 * 17 16 14 31 31 H 1.08008 * 120.36894 * 180.24113 * 18 17 16 32 32 H 0.96707 * 113.99772 * 270.02281 * 20 19 18 33 33 H 1.08001 * 119.68509 * 179.97438 * 22 21 19 34 34 H 1.09000 * 110.36625 * 94.71325 * 23 13 12 35 35 H 1.09000 * 110.36825 * 217.03449 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6025 1.9853 -1.3948 5 1 1.3978 2.6809 0.5915 6 1 3.4899 1.4729 0.8032 7 6 2.0045 -1.1941 0.0005 8 1 3.0819 -1.1956 0.0742 9 6 1.2545 -2.4972 -0.1017 10 8 0.2245 -2.5710 0.8860 11 6 2.2210 -3.7056 0.0113 12 6 1.4788 -4.8155 -0.7623 13 7 0.5352 -4.1546 -1.6758 14 6 -0.3128 -4.7799 -2.5164 15 8 -1.1220 -4.1348 -3.1546 16 6 -0.2589 -6.2478 -2.6623 17 6 0.5637 -7.0167 -1.8257 18 6 0.5761 -8.3855 -1.9973 19 6 -0.2133 -8.9536 -2.9928 20 8 -0.2016 -10.2969 -3.1691 21 7 -0.9753 -8.2000 -3.7703 22 6 -1.0211 -6.8908 -3.6382 23 6 0.6746 -2.6948 -1.5246 24 1 -0.4849 0.8401 -0.0004 25 1 -0.4041 -1.8368 0.8545 26 1 2.3620 -3.9905 1.0540 27 1 3.1774 -3.4799 -0.4606 28 1 0.9351 -5.4531 -0.0653 29 1 2.1904 -5.4125 -1.3327 30 1 1.1690 -6.5491 -1.0633 31 1 1.1945 -9.0091 -1.3686 32 1 0.4681 -10.6057 -3.7946 33 1 -1.6545 -6.3091 -4.2915 34 1 1.3619 -2.2999 -2.2726 35 1 -0.2981 -2.2102 -1.6085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:21 Heat of formation + Delta-G solvation = -87.692867 kcal Electronic energy + Delta-G solvation = -21577.291729 eV Core-core repulsion = 18154.611734 eV Total energy + Delta-G solvation = -3422.679995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.98032 -40.66743 -38.97487 -37.92921 -36.32667 -34.10433 -33.86147 -32.09615 -31.32461 -29.76237 -27.28717 -25.65011 -24.67796 -23.67808 -21.53074 -21.06597 -19.90176 -19.19910 -18.43969 -17.83799 -17.20314 -17.05961 -16.70333 -16.49277 -16.15127 -15.50434 -15.04251 -14.92708 -14.77875 -14.52449 -14.22603 -13.88975 -13.47419 -13.37474 -13.17144 -12.87449 -12.84216 -12.33818 -12.31069 -12.18378 -12.07732 -11.34002 -11.20468 -11.07923 -10.66033 -10.47416 -10.31805 -10.12133 -9.51901 -8.27332 -6.43388 -0.53860 0.08599 1.43351 1.45524 1.54511 1.67283 1.93595 2.38231 2.49719 2.70123 2.99531 3.36713 3.58890 3.70703 3.79383 3.90358 4.10918 4.13919 4.24230 4.37788 4.49284 4.61545 4.69203 4.83287 4.92192 4.97230 5.06315 5.22414 5.36386 5.41633 5.45333 5.77881 6.02976 6.48795 6.55592 6.65697 6.77038 7.02341 7.29898 7.48443 8.78522 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040663 B = 0.004157 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.420255 B = 6733.323156 C = 7090.410524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.230 3.770 10 O -0.595 6.595 11 C -0.115 4.115 12 C 0.090 3.910 13 N -0.603 5.603 14 C 0.563 3.437 15 O -0.592 6.592 16 C -0.202 4.202 17 C -0.055 4.055 18 C -0.175 4.175 19 C 0.326 3.674 20 O -0.486 6.486 21 N -0.530 5.530 22 C 0.175 3.825 23 C 0.101 3.899 24 H 0.272 0.728 25 H 0.380 0.620 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.195 0.805 31 H 0.187 0.813 32 H 0.426 0.574 33 H 0.164 0.836 34 H 0.056 0.944 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.799 -16.162 -2.668 17.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.176 4.176 3 Si 0.792 3.208 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.592 4.592 8 H 0.093 0.907 9 C 0.189 3.811 10 O -0.406 6.406 11 C -0.152 4.152 12 C -0.031 4.031 13 N -0.334 5.334 14 C 0.353 3.647 15 O -0.474 6.474 16 C -0.207 4.207 17 C -0.080 4.080 18 C -0.196 4.196 19 C 0.147 3.853 20 O -0.297 6.297 21 N -0.250 5.250 22 C 0.017 3.983 23 C -0.023 4.023 24 H 0.081 0.919 25 H 0.234 0.766 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.129 0.871 30 H 0.211 0.789 31 H 0.204 0.796 32 H 0.289 0.711 33 H 0.181 0.819 34 H 0.074 0.926 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.592 -16.777 -3.101 17.955 hybrid contribution 0.226 2.238 -0.166 2.255 sum 5.818 -14.540 -3.267 15.998 Atomic orbital electron populations 1.69440 1.07423 1.28612 1.50719 1.25849 0.95652 1.03034 0.93050 0.85434 0.78652 0.78376 0.78376 1.20151 1.21230 1.18724 1.21891 0.94505 0.91265 1.51576 0.90737 1.19887 0.85174 0.93515 0.82498 1.86024 1.43966 1.52891 1.57730 1.22727 0.98058 0.93125 1.01324 1.22802 0.91868 0.96197 0.92209 1.48608 1.37707 1.08549 1.38512 1.18191 0.79877 0.87587 0.79040 1.90735 1.39156 1.68430 1.49126 1.20796 1.04588 0.92789 1.02520 1.23386 0.94074 0.93982 0.96513 1.22436 1.01205 0.95094 1.00839 1.19792 0.89863 0.84769 0.90834 1.84676 1.62945 1.14576 1.67526 1.67272 1.22220 1.06504 1.28972 1.22616 0.93473 0.88499 0.93700 1.22999 0.99669 0.78528 1.01057 0.91854 0.76628 0.89139 0.88632 0.89193 0.87114 0.78892 0.79557 0.71092 0.81858 0.92592 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.52 10.94 21.45 0.23 -49.29 16 2 C 0.02 1.23 5.34 84.65 0.45 1.68 16 3 Si 0.97 40.65 29.54 68.60 2.03 42.68 16 4 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.55 -27.64 8.24 25.60 0.21 -27.43 16 8 H 0.07 3.53 7.75 -2.91 -0.02 3.50 16 9 C 0.23 10.62 0.90 -10.15 -0.01 10.61 16 10 O -0.59 -30.34 13.17 -148.98 -1.96 -32.30 16 11 C -0.11 -3.87 6.13 31.78 0.19 -3.67 16 12 C 0.09 2.54 4.87 86.73 0.42 2.96 16 13 N -0.60 -23.20 3.33 -818.90 -2.72 -25.93 16 14 C 0.56 22.09 7.80 86.72 0.68 22.76 16 15 O -0.59 -28.22 16.62 -3.99 -0.07 -28.29 16 16 C -0.20 -6.01 5.89 -20.00 -0.12 -6.13 16 17 C -0.06 -1.17 8.68 22.70 0.20 -0.97 16 18 C -0.18 -2.94 10.02 22.43 0.22 -2.72 16 19 C 0.33 6.85 7.74 84.83 0.66 7.50 16 20 O -0.49 -7.75 13.55 -87.94 -1.19 -8.95 16 21 N -0.53 -14.35 10.37 -307.82 -3.19 -17.55 16 22 C 0.18 5.16 10.76 85.03 0.91 6.07 16 23 C 0.10 4.71 5.89 86.86 0.51 5.22 16 24 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 25 H 0.38 20.90 6.50 -74.05 -0.48 20.42 16 26 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 27 H 0.10 2.90 8.00 -2.38 -0.02 2.88 16 28 H 0.09 2.24 6.74 -2.39 -0.02 2.22 16 29 H 0.11 2.18 6.72 -2.39 -0.02 2.16 16 30 H 0.19 3.37 2.90 -4.25 -0.01 3.36 16 31 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 32 H 0.43 2.09 9.06 -74.05 -0.67 1.42 16 33 H 0.16 4.92 7.67 -2.91 -0.02 4.90 16 34 H 0.06 2.65 8.03 -2.39 -0.02 2.63 16 35 H 0.04 2.01 7.99 -2.39 -0.02 1.99 16 Total: -1.00 -70.01 296.97 -2.53 -72.54 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.01 Total: 31.17 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 4.34 Total: 15.90 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -5.68 Total: -92.76 kcal Atomic # 8 Polarization: -66.31 SS G_CDS: -3.22 Total: -69.53 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -70.01 -2.53 -72.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.155 kcal (2) G-P(sol) polarization free energy of solvation -70.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds