Wall clock time and date at job start Tue Mar 31 2020 00:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48507 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47251 * 299.99606 * 3 2 1 6 6 H 1.48497 * 109.47495 * 59.99998 * 3 2 1 7 7 C 1.37884 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99946 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88561 * 59.30055 * 9 7 2 11 11 C 1.55149 * 111.00456 * 183.18304 * 9 7 2 12 12 C 1.54327 * 102.94214 * 153.61700 * 11 9 7 13 13 N 1.47014 * 107.27187 * 337.80814 * 12 11 9 14 14 C 1.34784 * 125.65042 * 178.89586 * 13 12 11 15 15 O 1.21556 * 119.99949 * 180.02562 * 14 13 12 16 16 C 1.47822 * 119.99706 * 0.02562 * 14 13 12 17 17 N 1.32862 * 119.78502 * 359.72864 * 16 14 13 18 18 C 1.31376 * 121.69221 * 179.70539 * 17 16 14 19 19 C 1.38767 * 121.07063 * 0.57265 * 18 17 16 20 20 C 1.38301 * 119.44193 * 359.71732 * 19 18 17 21 21 C 1.39345 * 118.44454 * 0.02562 * 20 19 18 22 22 O 1.35643 * 120.54306 * 179.97438 * 21 20 19 23 23 C 1.47419 * 108.70437 * 358.94082 * 13 12 11 24 24 H 0.97001 * 119.99988 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00311 * 303.88347 * 10 9 7 26 26 H 1.09002 * 110.72373 * 271.97346 * 11 9 7 27 27 H 1.09000 * 110.72205 * 35.08155 * 11 9 7 28 28 H 1.08999 * 109.88583 * 97.22830 * 12 11 9 29 29 H 1.08998 * 109.88332 * 218.23443 * 12 11 9 30 30 H 1.08001 * 119.46271 * 180.26667 * 18 17 16 31 31 H 1.08000 * 120.28131 * 179.69598 * 19 18 17 32 32 H 1.08000 * 120.77619 * 179.97438 * 20 19 18 33 33 H 0.96698 * 114.00033 * 270.02413 * 22 21 20 34 34 H 1.09009 * 110.36844 * 265.29198 * 23 13 12 35 35 H 1.09002 * 110.37005 * 142.96697 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4055 -2.5993 -1.1483 11 6 2.2254 -3.7039 0.0792 12 6 1.3640 -4.8021 0.7378 13 7 0.2764 -4.1282 1.4618 14 6 -0.7051 -4.7411 2.1531 15 8 -1.5565 -4.0803 2.7152 16 6 -0.7459 -6.2169 2.2276 17 7 0.1838 -6.9350 1.6070 18 6 0.1867 -8.2480 1.6531 19 6 -0.7943 -8.9424 2.3466 20 6 -1.7877 -8.2404 3.0046 21 6 -1.7669 -6.8483 2.9459 22 8 -2.7206 -6.1175 3.5752 23 6 0.4363 -2.6710 1.3058 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2208 -1.8683 -1.2404 26 1 2.5435 -4.0093 -0.9176 27 1 3.0876 -3.4620 0.7006 28 1 0.9492 -5.4571 -0.0284 29 1 1.9710 -5.3826 1.4325 30 1 0.9624 -8.7959 1.1388 31 1 -0.7824 -10.0221 2.3720 32 1 -2.5620 -8.7590 3.5505 33 1 -3.4961 -5.9291 3.0290 34 1 0.9845 -2.2567 2.1520 35 1 -0.5375 -2.1904 1.2116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:51 Heat of formation + Delta-G solvation = -75.785922 kcal Electronic energy + Delta-G solvation = -21901.695169 eV Core-core repulsion = 18479.531498 eV Total energy + Delta-G solvation = -3422.163671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.71787 -38.80588 -37.39343 -36.80921 -34.19698 -32.46956 -32.15608 -30.52463 -29.79993 -27.72591 -25.61156 -24.23712 -23.24431 -22.23867 -19.73983 -19.40022 -18.40442 -17.31537 -16.98077 -16.70674 -15.81940 -15.21140 -15.12795 -14.85574 -14.60348 -14.16628 -13.61104 -13.43225 -12.93928 -12.89164 -12.80830 -12.71379 -11.89917 -11.63206 -11.47834 -11.28132 -11.03630 -10.67916 -10.47912 -10.43258 -10.15515 -9.97250 -9.87646 -9.28674 -9.09297 -8.97429 -8.65584 -8.32821 -7.66767 -6.26202 -4.35773 0.60739 1.01886 3.05854 3.21240 3.30236 3.33797 3.53036 3.85886 4.09372 4.27516 4.32813 4.64546 4.76456 4.85609 5.01526 5.28122 5.38991 5.62491 5.80030 5.82304 5.90533 5.99851 6.20753 6.30890 6.51054 6.62970 6.82488 6.95187 7.07665 7.31674 7.39875 7.54185 7.75016 7.77007 8.03874 8.27155 8.68028 8.75887 9.33815 9.45448 10.80873 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033503 B = 0.004792 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.546438 B = 5841.877441 C = 6381.838097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.124 4.124 12 C 0.124 3.876 13 N -0.587 5.587 14 C 0.566 3.434 15 O -0.534 6.534 16 C 0.064 3.936 17 N -0.433 5.433 18 C 0.083 3.917 19 C -0.142 4.142 20 C -0.115 4.115 21 C 0.115 3.885 22 O -0.471 6.471 23 C 0.093 3.907 24 H 0.270 0.730 25 H 0.383 0.617 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.164 0.836 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.397 0.603 34 H 0.062 0.938 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 -16.222 2.972 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.162 4.162 12 C 0.001 3.999 13 N -0.317 5.317 14 C 0.352 3.648 15 O -0.411 6.411 16 C -0.074 4.074 17 N -0.146 5.146 18 C -0.078 4.078 19 C -0.162 4.162 20 C -0.142 4.142 21 C 0.066 3.934 22 O -0.280 6.280 23 C -0.028 4.028 24 H 0.080 0.920 25 H 0.234 0.766 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.181 0.819 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.255 0.745 34 H 0.080 0.920 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.053 -15.836 3.239 16.199 hybrid contribution -0.877 0.851 0.266 1.251 sum -1.930 -14.985 3.505 15.510 Atomic orbital electron populations 1.69662 1.06012 1.27817 1.49870 1.25094 0.95035 0.99785 0.93375 0.86347 0.80069 0.82729 0.77749 1.19563 1.20759 1.20771 1.21550 0.93778 0.90079 1.52128 0.91390 1.19610 0.86154 0.91840 0.81604 1.86087 1.53907 1.52001 1.47262 1.22729 0.97803 0.95408 1.00289 1.21999 0.88035 0.94748 0.95132 1.48591 1.25421 1.09743 1.47971 1.17329 0.82087 0.85044 0.80317 1.90790 1.38711 1.64959 1.46677 1.21998 0.93680 0.95534 0.96238 1.67991 1.22554 1.08071 1.15961 1.22911 0.97862 0.89866 0.97113 1.22264 0.94844 1.01610 0.97463 1.21950 1.00066 0.92915 0.99236 1.19415 0.91590 0.89787 0.92568 1.84749 1.30458 1.72679 1.40139 1.23330 1.02771 0.76332 1.00338 0.92009 0.76607 0.90847 0.90674 0.91472 0.92195 0.81925 0.84178 0.83837 0.74494 0.91994 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.08 10.68 55.43 0.59 -23.48 16 2 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -14.14 8.26 -34.44 -0.28 -14.43 16 8 H 0.07 1.75 7.78 -52.49 -0.41 1.35 16 9 C 0.25 6.16 0.89 -89.63 -0.08 6.08 16 10 O -0.58 -15.23 13.19 -35.23 -0.46 -15.70 16 11 C -0.12 -2.58 6.13 -24.90 -0.15 -2.74 16 12 C 0.12 2.40 5.40 -3.07 -0.02 2.39 16 13 N -0.59 -12.97 3.33 -171.64 -0.57 -13.54 16 14 C 0.57 12.22 7.83 -12.34 -0.10 12.13 16 15 O -0.53 -12.81 15.39 -16.63 -0.26 -13.07 16 16 C 0.06 1.11 6.73 -82.88 -0.56 0.56 16 17 N -0.43 -6.59 6.84 -9.71 -0.07 -6.66 16 18 C 0.08 0.90 11.17 -17.55 -0.20 0.70 16 19 C -0.14 -1.26 10.10 -39.36 -0.40 -1.66 16 20 C -0.12 -1.21 10.12 -39.15 -0.40 -1.60 16 21 C 0.12 1.68 6.74 -38.55 -0.26 1.42 16 22 O -0.47 -6.97 11.58 -40.58 -0.47 -7.44 16 23 C 0.09 2.32 5.51 -2.53 -0.01 2.31 16 24 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.38 10.27 7.18 45.56 0.33 10.59 16 26 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.07 1.47 8.02 -51.93 -0.42 1.05 16 28 H 0.07 1.28 7.40 -51.93 -0.38 0.90 16 29 H 0.06 1.06 7.54 -51.93 -0.39 0.67 16 30 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.40 4.32 9.06 45.56 0.41 4.73 16 34 H 0.06 1.58 8.03 -51.92 -0.42 1.16 16 35 H 0.08 2.35 7.48 -51.93 -0.39 1.96 16 LS Contribution 299.14 15.07 4.51 4.51 Total: -1.00 -32.04 299.14 -6.79 -38.83 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -2.49 Total: 14.20 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -2.55 Total: 6.90 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.05 Total: -43.69 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -1.19 Total: -36.20 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.04 -6.79 -38.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.956 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds