Wall clock time and date at job start Tue Mar 31 2020 00:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48507 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47251 * 299.99606 * 3 2 1 6 6 H 1.48497 * 109.47495 * 59.99998 * 3 2 1 7 7 C 1.37884 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99946 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88561 * 59.30055 * 9 7 2 11 11 C 1.55149 * 111.00456 * 183.18304 * 9 7 2 12 12 C 1.54327 * 102.94214 * 153.61700 * 11 9 7 13 13 N 1.47014 * 107.27187 * 337.80814 * 12 11 9 14 14 C 1.34784 * 125.65042 * 178.89586 * 13 12 11 15 15 O 1.21556 * 119.99949 * 180.02562 * 14 13 12 16 16 C 1.47822 * 119.99706 * 0.02562 * 14 13 12 17 17 N 1.32862 * 119.78502 * 359.72864 * 16 14 13 18 18 C 1.31376 * 121.69221 * 179.70539 * 17 16 14 19 19 C 1.38767 * 121.07063 * 0.57265 * 18 17 16 20 20 C 1.38301 * 119.44193 * 359.71732 * 19 18 17 21 21 C 1.39345 * 118.44454 * 0.02562 * 20 19 18 22 22 O 1.35643 * 120.54306 * 179.97438 * 21 20 19 23 23 C 1.47419 * 108.70437 * 358.94082 * 13 12 11 24 24 H 0.97001 * 119.99988 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00311 * 303.88347 * 10 9 7 26 26 H 1.09002 * 110.72373 * 271.97346 * 11 9 7 27 27 H 1.09000 * 110.72205 * 35.08155 * 11 9 7 28 28 H 1.08999 * 109.88583 * 97.22830 * 12 11 9 29 29 H 1.08998 * 109.88332 * 218.23443 * 12 11 9 30 30 H 1.08001 * 119.46271 * 180.26667 * 18 17 16 31 31 H 1.08000 * 120.28131 * 179.69598 * 19 18 17 32 32 H 1.08000 * 120.77619 * 179.97438 * 20 19 18 33 33 H 0.96698 * 114.00033 * 270.02413 * 22 21 20 34 34 H 1.09009 * 110.36844 * 265.29198 * 23 13 12 35 35 H 1.09002 * 110.37005 * 142.96697 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4055 -2.5993 -1.1483 11 6 2.2254 -3.7039 0.0792 12 6 1.3640 -4.8021 0.7378 13 7 0.2764 -4.1282 1.4618 14 6 -0.7051 -4.7411 2.1531 15 8 -1.5565 -4.0803 2.7152 16 6 -0.7459 -6.2169 2.2276 17 7 0.1838 -6.9350 1.6070 18 6 0.1867 -8.2480 1.6531 19 6 -0.7943 -8.9424 2.3466 20 6 -1.7877 -8.2404 3.0046 21 6 -1.7669 -6.8483 2.9459 22 8 -2.7206 -6.1175 3.5752 23 6 0.4363 -2.6710 1.3058 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2208 -1.8683 -1.2404 26 1 2.5435 -4.0093 -0.9176 27 1 3.0876 -3.4620 0.7006 28 1 0.9492 -5.4571 -0.0284 29 1 1.9710 -5.3826 1.4325 30 1 0.9624 -8.7959 1.1388 31 1 -0.7824 -10.0221 2.3720 32 1 -2.5620 -8.7590 3.5505 33 1 -3.4961 -5.9291 3.0290 34 1 0.9845 -2.2567 2.1520 35 1 -0.5375 -2.1904 1.2116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:51 Heat of formation + Delta-G solvation = -101.079192 kcal Electronic energy + Delta-G solvation = -21902.791968 eV Core-core repulsion = 18479.531498 eV Total energy + Delta-G solvation = -3423.260470 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.87313 -40.37596 -38.84747 -38.18419 -36.05394 -34.20826 -33.46951 -31.91366 -31.18429 -29.56232 -27.36850 -25.59921 -24.25941 -23.76221 -21.49423 -20.96741 -19.43664 -19.18182 -18.52519 -17.81704 -17.12832 -16.98178 -16.65426 -16.28833 -16.21766 -15.65876 -14.92221 -14.78201 -14.64225 -14.44774 -14.16772 -13.82241 -13.54154 -13.48727 -13.24789 -12.87373 -12.62364 -12.34851 -12.27349 -12.17646 -12.07542 -11.40178 -11.13914 -10.85733 -10.69329 -10.36869 -10.21689 -10.03048 -9.42727 -8.26623 -6.44381 -0.42987 0.15484 1.40875 1.43749 1.55319 1.74266 2.01812 2.38074 2.73086 2.99411 3.03631 3.20738 3.68553 3.84414 3.91017 4.02798 4.13851 4.21476 4.40537 4.49142 4.53859 4.72390 4.86270 4.99412 5.02290 5.04100 5.11656 5.33467 5.42653 5.45964 5.55394 5.74550 6.03205 6.56869 6.61125 6.66193 6.77652 7.13371 7.27701 7.34685 8.79301 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033503 B = 0.004792 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.546438 B = 5841.877441 C = 6381.838097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.025 3.975 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.283 1.283 7 C -0.557 4.557 8 H 0.071 0.929 9 C 0.234 3.766 10 O -0.589 6.589 11 C -0.119 4.119 12 C 0.136 3.864 13 N -0.597 5.597 14 C 0.556 3.444 15 O -0.576 6.576 16 C 0.021 3.979 17 N -0.457 5.457 18 C 0.081 3.919 19 C -0.109 4.109 20 C -0.108 4.108 21 C 0.104 3.896 22 O -0.491 6.491 23 C 0.107 3.893 24 H 0.270 0.730 25 H 0.375 0.625 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.202 0.798 31 H 0.193 0.807 32 H 0.178 0.822 33 H 0.408 0.592 34 H 0.044 0.956 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 -19.505 3.010 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.595 4.595 8 H 0.089 0.911 9 C 0.194 3.806 10 O -0.397 6.397 11 C -0.157 4.157 12 C 0.014 3.986 13 N -0.328 5.328 14 C 0.345 3.655 15 O -0.456 6.456 16 C -0.115 4.115 17 N -0.170 5.170 18 C -0.081 4.081 19 C -0.128 4.128 20 C -0.134 4.134 21 C 0.055 3.945 22 O -0.303 6.303 23 C -0.016 4.016 24 H 0.080 0.920 25 H 0.225 0.775 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.218 0.782 31 H 0.210 0.790 32 H 0.195 0.805 33 H 0.268 0.732 34 H 0.062 0.938 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.053 -19.142 3.267 19.419 hybrid contribution -1.259 1.691 0.269 2.125 sum -1.206 -17.451 3.536 17.847 Atomic orbital electron populations 1.69783 1.07297 1.28485 1.50243 1.25872 0.95767 1.02990 0.92927 0.85354 0.79151 0.78656 0.77553 1.18667 1.20363 1.20849 1.21861 0.94093 0.91130 1.52440 0.91092 1.19833 0.86572 0.93358 0.80837 1.86074 1.53977 1.51646 1.48023 1.22753 0.97448 0.93996 1.01456 1.22005 0.87199 0.94028 0.95338 1.48668 1.26715 1.08508 1.48890 1.18187 0.80919 0.87408 0.78951 1.90732 1.40020 1.66698 1.48177 1.21380 0.96796 0.92878 1.00420 1.67815 1.22578 1.10300 1.16355 1.23669 0.99118 0.88405 0.96867 1.22847 0.92158 1.03966 0.93857 1.22321 1.01294 0.90747 0.99040 1.19716 0.90836 0.91525 0.92386 1.84694 1.31172 1.73413 1.40986 1.22887 1.00301 0.78434 1.00001 0.92016 0.77519 0.89653 0.89478 0.90967 0.90022 0.78157 0.78973 0.80470 0.73218 0.93777 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.37 10.68 21.45 0.23 -51.14 16 2 C 0.03 1.34 5.27 84.66 0.45 1.78 16 3 Si 0.97 42.52 29.54 68.60 2.03 44.54 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.56 -29.89 8.26 25.60 0.21 -29.68 16 8 H 0.07 3.67 7.78 -2.92 -0.02 3.65 16 9 C 0.23 11.95 0.89 -10.15 -0.01 11.94 16 10 O -0.59 -31.79 13.19 -148.98 -1.96 -33.76 16 11 C -0.12 -4.89 6.13 31.78 0.19 -4.70 16 12 C 0.14 5.24 5.40 86.73 0.47 5.70 16 13 N -0.60 -27.43 3.33 -815.22 -2.71 -30.15 16 14 C 0.56 25.15 7.83 86.78 0.68 25.83 16 15 O -0.58 -29.52 15.39 17.10 0.26 -29.26 16 16 C 0.02 0.74 6.73 41.93 0.28 1.02 16 17 N -0.46 -13.04 6.84 -184.63 -1.26 -14.30 16 18 C 0.08 1.39 11.17 84.89 0.95 2.34 16 19 C -0.11 -1.31 10.10 22.41 0.23 -1.09 16 20 C -0.11 -1.83 10.12 22.55 0.23 -1.60 16 21 C 0.10 2.93 6.74 22.94 0.15 3.09 16 22 O -0.49 -14.78 11.58 -68.59 -0.79 -15.57 16 23 C 0.11 5.60 5.51 86.86 0.48 6.08 16 24 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 25 H 0.38 21.15 7.18 -74.06 -0.53 20.61 16 26 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 27 H 0.09 3.34 8.02 -2.39 -0.02 3.32 16 28 H 0.07 2.69 7.40 -2.39 -0.02 2.68 16 29 H 0.08 2.77 7.54 -2.39 -0.02 2.76 16 30 H 0.20 1.84 8.06 -2.91 -0.02 1.81 16 31 H 0.19 0.44 8.06 -2.91 -0.02 0.41 16 32 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.41 9.32 9.06 -74.06 -0.67 8.65 16 34 H 0.04 2.40 8.03 -2.38 -0.02 2.38 16 35 H 0.05 2.73 7.48 -2.39 -0.02 2.71 16 Total: -1.00 -74.61 299.14 0.04 -74.57 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.06 Total: 34.33 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 4.31 Total: 20.73 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -3.75 Total: -95.59 kcal Atomic # 8 Polarization: -76.09 SS G_CDS: -2.50 Total: -78.59 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -74.61 0.04 -74.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.505 kcal (2) G-P(sol) polarization free energy of solvation -74.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds