Wall clock time and date at job start Tue Mar 31 2020 00:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99985 * 2 1 4 4 H 1.48492 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46901 * 300.00269 * 3 2 1 6 6 H 1.48501 * 109.47021 * 59.99895 * 3 2 1 7 7 C 1.37874 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00181 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47428 * 179.97438 * 9 7 2 11 11 N 1.46493 * 109.47217 * 180.02562 * 10 9 7 12 12 S 1.65600 * 120.00222 * 165.00487 * 11 10 9 13 13 O 1.42102 * 106.39836 * 311.45509 * 12 11 10 14 14 O 1.42100 * 106.40723 * 178.53711 * 12 11 10 15 15 N 1.65597 * 107.22071 * 64.99446 * 12 11 10 16 16 C 1.44457 * 118.51559 * 90.00468 * 15 12 11 17 17 C 1.54875 * 109.32367 * 268.95530 * 16 15 12 18 18 C 1.47682 * 109.68051 * 290.09811 * 17 16 15 19 19 O 1.42565 * 113.66581 * 60.81166 * 18 17 16 20 20 C 1.40532 * 113.53520 * 272.23944 * 19 18 17 21 21 C 1.48195 * 118.51245 * 270.02411 * 15 12 11 22 22 H 0.97003 * 120.00228 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46874 * 60.00264 * 9 7 2 24 24 H 1.08995 * 109.47055 * 300.00520 * 9 7 2 25 25 H 1.09004 * 109.46822 * 59.99752 * 10 9 7 26 26 H 1.09004 * 109.47237 * 300.00467 * 10 9 7 27 27 H 0.97000 * 120.00471 * 344.99557 * 11 10 9 28 28 H 1.09002 * 109.49863 * 149.00029 * 16 15 12 29 29 H 1.09001 * 109.51483 * 28.91980 * 16 15 12 30 30 H 1.09001 * 109.43222 * 170.03511 * 17 16 15 31 31 H 1.08999 * 109.40143 * 50.14416 * 17 16 15 32 32 H 1.08995 * 108.64941 * 299.72684 * 18 17 16 33 33 H 1.09004 * 108.64607 * 181.88697 * 18 17 16 34 34 H 1.09001 * 109.39828 * 215.40510 * 20 19 18 35 35 H 1.09002 * 109.40444 * 335.15962 * 20 19 18 36 36 H 1.08997 * 109.23077 * 259.06459 * 21 15 12 37 37 H 1.09001 * 109.22994 * 18.47703 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5128 -4.9307 0.0020 12 16 2.2984 -6.3405 -0.3692 13 8 3.0275 -6.0911 -1.5631 14 8 1.3366 -7.3796 -0.2486 15 7 3.4218 -6.6031 0.8187 16 6 3.0310 -7.3668 1.9809 17 6 2.4984 -6.4044 3.0711 18 6 3.6136 -5.6042 3.6161 19 8 4.2661 -4.7938 2.6415 20 6 5.3071 -5.4550 1.9677 21 6 4.7826 -6.0437 0.6415 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5575 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 2.8726 -3.6038 0.8909 26 1 2.8713 -3.6047 -0.8890 27 1 0.5677 -4.9451 0.2199 28 1 3.8936 -7.9108 2.3657 29 1 2.2482 -8.0737 1.7057 30 1 2.0411 -6.9831 3.8737 31 1 1.7539 -5.7389 2.6343 32 1 4.3470 -6.2813 4.0539 33 1 3.2264 -4.9580 4.4039 34 1 6.1093 -4.7476 1.7578 35 1 5.6905 -6.2600 2.5947 36 1 5.4553 -6.8341 0.3086 37 1 4.7521 -5.2571 -0.1126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593576484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:37 Heat of formation + Delta-G solvation = -125.267391 kcal Electronic energy + Delta-G solvation = -21317.837703 eV Core-core repulsion = 18028.972305 eV Total energy + Delta-G solvation = -3288.865397 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.46323 -37.06606 -35.66680 -35.49072 -35.23346 -33.07431 -32.66410 -29.03275 -28.45131 -26.30595 -24.40107 -22.06720 -21.80535 -21.02200 -19.01858 -18.00380 -17.21780 -16.99809 -16.26418 -16.01552 -15.68269 -15.13727 -14.55580 -14.20801 -14.11738 -13.72200 -13.60023 -13.58677 -12.82286 -12.51465 -12.39186 -12.06386 -11.86602 -11.73427 -11.66043 -11.26404 -11.19481 -11.09585 -10.91661 -10.73257 -10.54813 -10.40277 -9.71998 -9.51053 -9.21290 -9.00843 -8.76166 -8.35131 -6.03011 -4.05367 0.90322 3.06835 3.31263 3.38746 3.43199 3.80001 3.86739 4.44619 4.51546 4.61058 4.71545 4.86271 4.97176 5.17426 5.24592 5.30193 5.33959 5.43217 5.52096 5.57764 5.70667 5.77222 5.89844 6.05717 6.09669 6.40710 6.54389 6.71624 6.86948 7.28454 7.53055 7.63816 7.73831 7.96897 8.35741 9.00847 9.58727 11.08653 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.005851 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.605385 B = 4784.136355 C = 5360.746527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.019 3.981 10 C 0.120 3.880 11 N -1.120 6.120 12 S 2.783 3.217 13 O -0.982 6.982 14 O -0.993 6.993 15 N -0.996 5.996 16 C 0.115 3.885 17 C -0.181 4.181 18 C 0.066 3.934 19 O -0.355 6.355 20 C 0.052 3.948 21 C 0.092 3.908 22 H 0.260 0.740 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.412 0.588 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.873 -14.636 7.419 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.078 0.922 9 C -0.019 4.019 10 C -0.005 4.005 11 N -0.882 5.882 12 S 2.791 3.209 13 O -0.966 6.966 14 O -0.977 6.977 15 N -0.835 5.835 16 C -0.011 4.011 17 C -0.220 4.220 18 C -0.011 4.011 19 O -0.273 6.273 20 C -0.027 4.027 21 C -0.034 4.034 22 H 0.070 0.930 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.246 0.754 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.764 -14.905 6.590 18.504 hybrid contribution 0.082 0.948 0.521 1.085 sum 8.846 -13.957 7.111 17.990 Atomic orbital electron populations 1.69971 1.06086 1.26610 1.50711 1.25001 0.94855 0.99332 0.95200 0.86492 0.80145 0.83575 0.77528 1.19619 1.21027 1.21051 1.21134 0.93217 0.90515 1.50822 0.92243 1.19256 0.94060 0.90773 0.97837 1.21634 0.95948 0.82384 1.00511 1.55813 1.21513 1.23084 1.87806 1.01898 0.72681 0.72841 0.73517 1.93591 1.73269 1.85809 1.43882 1.93557 1.61038 1.55924 1.87187 1.57552 1.23630 1.66379 1.35977 1.21319 1.00912 0.93300 0.85611 1.22170 1.00161 0.99649 1.00055 1.21470 0.94531 0.94419 0.90654 1.87603 1.48543 1.37458 1.53657 1.22851 0.90400 0.96995 0.92496 1.22526 0.82757 0.98619 0.99476 0.92995 0.95994 0.95987 0.91700 0.92231 0.75429 0.90495 0.88770 0.89582 0.90043 0.93627 0.89759 0.88702 0.92833 0.90909 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.49 5.11 -27.89 -0.14 0.35 16 10 C 0.12 2.45 6.19 -4.05 -0.03 2.43 16 11 N -1.12 -19.60 6.05 -10.62 -0.06 -19.67 16 12 S 2.78 45.91 6.03 -107.50 -0.65 45.27 16 13 O -0.98 -19.07 16.32 -57.17 -0.93 -20.00 16 14 O -0.99 -17.73 16.55 -57.17 -0.95 -18.67 16 15 N -1.00 -12.91 2.91 -112.73 -0.33 -13.23 16 16 C 0.12 1.21 5.66 -4.14 -0.02 1.19 16 17 C -0.18 -1.86 6.03 -28.31 -0.17 -2.03 16 18 C 0.07 0.68 6.04 34.59 0.21 0.89 16 19 O -0.36 -4.66 9.45 -34.11 -0.32 -4.98 16 20 C 0.05 0.53 6.49 37.83 0.25 0.77 16 21 C 0.09 1.06 6.42 -2.44 -0.02 1.04 16 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 1.28 7.35 -51.93 -0.38 0.90 16 26 H 0.06 1.25 7.75 -51.93 -0.40 0.85 16 27 H 0.41 6.80 8.65 -34.46 -0.30 6.51 16 28 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 29 H 0.09 1.02 6.80 -51.93 -0.35 0.67 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.37 7.28 -51.93 -0.38 -0.01 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.42 7.21 -51.93 -0.37 0.05 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.23 7.27 -51.93 -0.38 0.85 16 LS Contribution 311.43 15.07 4.69 4.69 Total: -1.00 -34.09 311.43 -8.65 -42.74 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.49 Total: 1.76 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -0.33 Total: -8.52 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.34 Total: -58.73 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -2.20 Total: -43.66 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 45.91 SS G_CDS: -0.65 Total: 45.27 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.09 -8.65 -42.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593576484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.525 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds