Wall clock time and date at job start Tue Mar 31 2020 00:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99985 * 2 1 4 4 H 1.48492 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46901 * 300.00269 * 3 2 1 6 6 H 1.48501 * 109.47021 * 59.99895 * 3 2 1 7 7 C 1.37874 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00181 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47428 * 179.97438 * 9 7 2 11 11 N 1.46493 * 109.47217 * 180.02562 * 10 9 7 12 12 S 1.65600 * 120.00222 * 165.00487 * 11 10 9 13 13 O 1.42102 * 106.39836 * 311.45509 * 12 11 10 14 14 O 1.42100 * 106.40723 * 178.53711 * 12 11 10 15 15 N 1.65597 * 107.22071 * 64.99446 * 12 11 10 16 16 C 1.44457 * 118.51559 * 90.00468 * 15 12 11 17 17 C 1.54875 * 109.32367 * 268.95530 * 16 15 12 18 18 C 1.47682 * 109.68051 * 290.09811 * 17 16 15 19 19 O 1.42565 * 113.66581 * 60.81166 * 18 17 16 20 20 C 1.40532 * 113.53520 * 272.23944 * 19 18 17 21 21 C 1.48195 * 118.51245 * 270.02411 * 15 12 11 22 22 H 0.97003 * 120.00228 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46874 * 60.00264 * 9 7 2 24 24 H 1.08995 * 109.47055 * 300.00520 * 9 7 2 25 25 H 1.09004 * 109.46822 * 59.99752 * 10 9 7 26 26 H 1.09004 * 109.47237 * 300.00467 * 10 9 7 27 27 H 0.97000 * 120.00471 * 344.99557 * 11 10 9 28 28 H 1.09002 * 109.49863 * 149.00029 * 16 15 12 29 29 H 1.09001 * 109.51483 * 28.91980 * 16 15 12 30 30 H 1.09001 * 109.43222 * 170.03511 * 17 16 15 31 31 H 1.08999 * 109.40143 * 50.14416 * 17 16 15 32 32 H 1.08995 * 108.64941 * 299.72684 * 18 17 16 33 33 H 1.09004 * 108.64607 * 181.88697 * 18 17 16 34 34 H 1.09001 * 109.39828 * 215.40510 * 20 19 18 35 35 H 1.09002 * 109.40444 * 335.15962 * 20 19 18 36 36 H 1.08997 * 109.23077 * 259.06459 * 21 15 12 37 37 H 1.09001 * 109.22994 * 18.47703 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5128 -4.9307 0.0020 12 16 2.2984 -6.3405 -0.3692 13 8 3.0275 -6.0911 -1.5631 14 8 1.3366 -7.3796 -0.2486 15 7 3.4218 -6.6031 0.8187 16 6 3.0310 -7.3668 1.9809 17 6 2.4984 -6.4044 3.0711 18 6 3.6136 -5.6042 3.6161 19 8 4.2661 -4.7938 2.6415 20 6 5.3071 -5.4550 1.9677 21 6 4.7826 -6.0437 0.6415 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5575 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 2.8726 -3.6038 0.8909 26 1 2.8713 -3.6047 -0.8890 27 1 0.5677 -4.9451 0.2199 28 1 3.8936 -7.9108 2.3657 29 1 2.2482 -8.0737 1.7057 30 1 2.0411 -6.9831 3.8737 31 1 1.7539 -5.7389 2.6343 32 1 4.3470 -6.2813 4.0539 33 1 3.2264 -4.9580 4.4039 34 1 6.1093 -4.7476 1.7578 35 1 5.6905 -6.2600 2.5947 36 1 5.4553 -6.8341 0.3086 37 1 4.7521 -5.2571 -0.1126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593576484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:36 Heat of formation + Delta-G solvation = -152.199489 kcal Electronic energy + Delta-G solvation = -21319.005566 eV Core-core repulsion = 18028.972305 eV Total energy + Delta-G solvation = -3290.033261 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.31169 -38.47799 -37.02872 -36.95801 -36.49784 -34.70541 -33.89206 -30.97167 -29.33471 -27.14095 -26.39442 -23.05420 -22.87921 -22.60314 -20.30210 -19.23406 -18.58961 -18.18986 -18.00982 -17.01950 -16.78220 -16.48311 -16.19574 -15.63650 -15.50644 -14.94836 -14.75431 -14.43533 -14.39689 -13.66119 -13.55961 -13.40349 -13.29037 -13.27624 -13.19043 -12.99653 -12.68220 -12.42240 -12.37101 -12.11601 -11.75201 -11.53152 -11.43817 -11.28432 -10.64028 -10.55775 -10.22913 -9.97605 -8.19813 -6.30165 -0.40867 1.42846 1.43397 1.56832 1.85247 2.42373 2.51022 3.08303 3.14990 3.29723 3.70239 3.90149 4.00613 4.19377 4.24839 4.40144 4.44564 4.53520 4.62666 4.66656 4.75395 4.82191 4.89518 4.91286 5.00220 5.03150 5.21586 5.29759 5.50891 5.65789 5.70794 5.82369 6.06295 6.25956 6.53190 6.85268 7.38852 8.92706 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.005851 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.605385 B = 4784.136355 C = 5360.746527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.024 3.976 10 C 0.143 3.857 11 N -1.122 6.122 12 S 2.797 3.203 13 O -1.013 7.013 14 O -1.006 7.006 15 N -0.988 5.988 16 C 0.108 3.892 17 C -0.181 4.181 18 C 0.059 3.941 19 O -0.390 6.390 20 C 0.051 3.949 21 C 0.083 3.917 22 H 0.264 0.736 23 H -0.006 1.006 24 H 0.005 0.995 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.415 0.585 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.895 -15.317 8.734 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.015 4.015 10 C 0.018 3.982 11 N -0.883 5.883 12 S 2.805 3.195 13 O -0.996 6.996 14 O -0.990 6.990 15 N -0.830 5.830 16 C -0.017 4.017 17 C -0.220 4.220 18 C -0.017 4.017 19 O -0.308 6.308 20 C -0.028 4.028 21 C -0.042 4.042 22 H 0.072 0.928 23 H 0.013 0.987 24 H 0.023 0.977 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.249 0.751 28 H 0.131 0.869 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.782 -15.597 7.904 20.542 hybrid contribution -0.552 1.077 0.149 1.220 sum 10.230 -14.520 8.053 19.502 Atomic orbital electron populations 1.70099 1.07802 1.27750 1.51637 1.25943 0.95746 1.03330 0.94661 0.85382 0.79252 0.78670 0.77652 1.18309 1.20646 1.20353 1.21568 0.93794 0.91725 1.50602 0.91602 1.19118 0.94390 0.92384 0.95601 1.21175 0.94599 0.81907 1.00566 1.55748 1.21880 1.22627 1.88066 1.01310 0.72532 0.72105 0.73507 1.93545 1.73756 1.86079 1.46259 1.93534 1.61999 1.55946 1.87536 1.57312 1.23310 1.66360 1.36000 1.21600 1.02357 0.93132 0.84612 1.22196 0.99681 0.99450 1.00671 1.21622 0.95179 0.94715 0.90160 1.87564 1.49512 1.39241 1.54448 1.23004 0.89836 0.98085 0.91848 1.22784 0.82174 0.99071 1.00186 0.92770 0.98728 0.97706 0.90778 0.92877 0.75140 0.86856 0.89219 0.86881 0.92971 0.90482 0.90140 0.87807 0.89658 0.88151 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 2 C 0.00 0.06 5.46 84.65 0.46 0.53 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.24 5.11 29.85 0.15 1.39 16 10 C 0.14 5.98 6.19 86.38 0.53 6.51 16 11 N -1.12 -40.19 6.05 -187.50 -1.14 -41.33 16 12 S 2.80 91.90 6.03 -56.49 -0.34 91.56 16 13 O -1.01 -39.52 16.32 -128.00 -2.09 -41.61 16 14 O -1.01 -35.60 16.55 -128.00 -2.12 -37.72 16 15 N -0.99 -23.95 2.91 -510.58 -1.48 -25.43 16 16 C 0.11 1.99 5.66 87.40 0.49 2.48 16 17 C -0.18 -3.34 6.03 29.57 0.18 -3.16 16 18 C 0.06 1.07 6.04 70.32 0.42 1.50 16 19 O -0.39 -9.45 9.45 -144.96 -1.37 -10.82 16 20 C 0.05 0.89 6.49 72.42 0.47 1.36 16 21 C 0.08 1.73 6.42 86.49 0.56 2.29 16 22 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 23 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 24 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.07 2.96 7.35 -2.39 -0.02 2.94 16 26 H 0.05 2.28 7.75 -2.39 -0.02 2.26 16 27 H 0.41 14.24 8.65 -96.75 -0.84 13.40 16 28 H 0.11 1.32 8.10 -2.39 -0.02 1.30 16 29 H 0.09 1.76 6.80 -2.39 -0.02 1.74 16 30 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 0.90 7.28 -2.39 -0.02 0.88 16 33 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 0.94 7.21 -2.39 -0.02 0.92 16 36 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.83 7.27 -2.39 -0.02 1.81 16 Total: -1.00 -73.93 311.43 -2.49 -76.42 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.23 Total: 16.18 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 3.51 Total: -17.15 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -2.33 Total: -122.87 kcal Atomic # 8 Polarization: -84.58 SS G_CDS: -5.58 Total: -90.15 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 91.90 SS G_CDS: -0.34 Total: 91.56 kcal Total: -73.93 -2.49 -76.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593576484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.780 kcal (2) G-P(sol) polarization free energy of solvation -73.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds