Wall clock time and date at job start Tue Mar 31 2020 01:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38089 * 120.35559 * 2 1 4 4 N 1.31932 * 120.83701 * 179.70589 * 3 2 1 5 5 C 1.32275 * 121.64323 * 0.55948 * 4 3 2 6 6 O 1.35682 * 119.68563 * 179.71280 * 5 4 3 7 7 C 1.42907 * 116.99526 * 355.24591 * 6 5 4 8 8 C 1.53001 * 109.46873 * 184.77507 * 7 6 5 9 9 C 1.50697 * 115.56070 * 268.93356 * 8 7 6 10 10 H 1.07996 * 120.00109 * 142.48066 * 9 8 7 11 11 C 1.37874 * 120.00120 * 322.47389 * 9 8 7 12 12 N 1.31525 * 119.99892 * 342.76845 * 11 9 8 13 13 Si 1.86795 * 120.00267 * 162.76879 * 11 9 8 14 14 H 1.48498 * 109.47149 * 90.00178 * 13 11 9 15 15 H 1.48499 * 109.47242 * 210.00091 * 13 11 9 16 16 H 1.48499 * 109.46848 * 330.00171 * 13 11 9 17 17 C 1.53002 * 117.49992 * 54.62031 * 8 7 6 18 18 C 1.52997 * 60.03416 * 107.47593 * 17 8 7 19 19 C 1.38879 * 120.63157 * 359.44422 * 5 4 3 20 20 N 1.48002 * 120.44067 * 180.29342 * 19 5 4 21 21 O 1.21798 * 119.99722 * 184.30402 * 20 19 5 22 22 O 1.21799 * 120.00001 * 4.30522 * 20 19 5 23 23 C 1.38415 * 119.11444 * 0.26576 * 19 5 4 24 24 H 1.09003 * 109.47078 * 270.01729 * 1 2 3 25 25 H 1.08998 * 109.47189 * 30.02145 * 1 2 3 26 26 H 1.09006 * 109.47068 * 150.02249 * 1 2 3 27 27 H 1.08005 * 119.57952 * 359.95938 * 3 2 1 28 28 H 1.08996 * 109.47074 * 64.77684 * 7 6 5 29 29 H 1.08998 * 109.46925 * 304.77420 * 7 6 5 30 30 H 0.96995 * 119.99666 * 185.02354 * 12 11 9 31 31 H 1.08996 * 117.50162 * 214.98314 * 17 8 7 32 32 H 1.09009 * 117.49798 * 359.97438 * 17 8 7 33 33 H 1.09003 * 117.49835 * 107.49795 * 18 17 8 34 34 H 1.08999 * 117.50332 * 252.52419 * 18 17 8 35 35 H 1.08003 * 120.75612 * 179.97438 * 23 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.1916 0.0000 4 7 3.5241 1.2027 0.0058 5 6 4.2275 0.0825 0.0008 6 8 5.5831 0.1403 0.0012 7 6 6.1772 1.4362 -0.0984 8 6 7.6970 1.2938 -0.2021 9 6 8.4432 1.3177 1.1069 10 1 9.3013 0.6781 1.2511 11 6 8.0303 2.1562 2.1205 12 7 7.2247 3.1614 1.8554 13 14 8.6153 1.8647 3.8704 14 1 9.8768 2.6131 4.1018 15 1 7.5785 2.3354 4.8238 16 1 8.8554 0.4139 4.0768 17 6 8.2485 0.3983 -1.3133 18 6 8.3839 1.9186 -1.4192 19 6 3.5918 -1.1523 0.0008 20 7 4.3831 -2.4030 0.0018 21 8 3.8197 -3.4800 -0.0774 22 8 5.5975 -2.3553 0.0818 23 6 2.2084 -1.1975 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6638 2.1263 -0.0007 28 1 5.9265 2.0198 0.7874 29 1 5.7982 1.9423 -0.9863 30 1 6.9924 3.7938 2.5531 31 1 9.1509 -0.1736 -1.0976 32 1 7.5285 -0.0899 -1.9703 33 1 9.3755 2.3470 -1.2730 34 1 7.7527 2.4308 -2.1454 35 1 1.6867 -2.1432 0.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594896778.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:18 Heat of formation + Delta-G solvation = 23.299999 kcal Electronic energy + Delta-G solvation = -21764.671688 eV Core-core repulsion = 18346.804704 eV Total energy + Delta-G solvation = -3417.866983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.88734 -40.51329 -38.21761 -36.21767 -35.88009 -33.49653 -32.54260 -32.27417 -27.60135 -26.59828 -26.27611 -25.41500 -23.19287 -22.01124 -21.17978 -19.35181 -18.79588 -18.43150 -17.94940 -17.24148 -16.97295 -16.09751 -15.58532 -14.90706 -14.66937 -14.14334 -13.96645 -13.72868 -13.42317 -13.05218 -12.52449 -12.50762 -12.22624 -11.67704 -11.19391 -11.08336 -10.96644 -10.84639 -10.69266 -10.52558 -10.45942 -10.34153 -10.28872 -9.88428 -9.54637 -9.15421 -8.79089 -8.50846 -8.14131 -6.17713 -4.14627 0.02339 0.94200 1.55487 1.70241 3.14873 3.23832 3.31828 3.38784 3.40112 4.11587 4.27739 4.32345 4.47497 4.61500 4.76922 4.95226 5.19274 5.29089 5.31385 5.51420 5.59146 5.74850 5.97923 5.99232 6.21387 6.36592 6.58526 6.66019 6.71188 6.75879 6.97941 7.29664 7.38367 7.50571 7.74524 7.85471 8.06654 8.31409 8.79029 9.41978 10.86227 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016740 B = 0.006005 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.190255 B = 4661.509625 C = 5000.170501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.201 4.201 3 C 0.197 3.803 4 N -0.519 5.519 5 C 0.397 3.603 6 O -0.256 6.256 7 C 0.089 3.911 8 C 0.046 3.954 9 C -0.482 4.482 10 H 0.067 0.933 11 C 0.067 3.933 12 N -0.880 5.880 13 Si 0.892 3.108 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.269 1.269 17 C -0.192 4.192 18 C -0.191 4.191 19 C -0.136 4.136 20 N 0.041 4.959 21 O -0.200 6.200 22 O -0.114 6.114 23 C 0.020 3.980 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.175 0.825 28 H 0.127 0.873 29 H 0.041 0.959 30 H 0.265 0.735 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.124 -3.220 -3.855 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.205 4.205 3 C 0.037 3.963 4 N -0.243 5.243 5 C 0.215 3.785 6 O -0.157 6.157 7 C 0.016 3.984 8 C 0.045 3.955 9 C -0.519 4.519 10 H 0.085 0.915 11 C -0.136 4.136 12 N -0.518 5.518 13 Si 0.719 3.281 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.193 1.193 17 C -0.229 4.229 18 C -0.229 4.229 19 C -0.224 4.224 20 N 0.558 4.442 21 O -0.404 6.404 22 O -0.339 6.339 23 C -0.006 4.006 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.192 0.808 28 H 0.144 0.856 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.952 -1.985 -3.729 14.578 hybrid contribution 0.032 -0.835 0.845 1.188 sum -13.920 -2.820 -2.884 14.493 Atomic orbital electron populations 1.20603 0.88663 1.03433 1.02863 1.20706 0.98429 0.92265 1.09066 1.22966 0.88512 0.98423 0.86404 1.68068 1.09203 1.27046 1.20032 1.19806 0.87439 0.86850 0.84397 1.86615 1.10930 1.37057 1.81083 1.23114 0.92587 0.78611 1.04039 1.18867 0.88415 0.98431 0.89740 1.20544 1.13096 1.22846 0.95399 0.91458 1.25005 0.94841 0.94454 0.99268 1.69810 1.35923 1.12397 1.33680 0.86572 0.78390 0.79179 0.83988 1.20430 1.21050 1.19346 1.22763 1.02660 0.92536 1.04954 1.23046 1.02180 0.94472 1.03177 1.21281 0.92355 0.83711 1.25075 1.43172 1.01576 1.01580 0.97857 1.94460 1.73705 1.16321 1.55879 1.94702 0.94514 1.93845 1.50885 1.21178 0.89838 1.00660 0.88959 0.90802 0.90776 0.91119 0.80848 0.85607 0.94047 0.92512 0.90037 0.91156 0.89710 0.91682 0.82023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.03 36.00 0.36 -0.26 16 2 C -0.20 -2.12 5.90 -104.48 -0.62 -2.73 16 3 C 0.20 2.40 10.85 -17.56 -0.19 2.21 16 4 N -0.52 -9.03 9.21 -13.33 -0.12 -9.16 16 5 C 0.40 7.76 7.47 -17.12 -0.13 7.63 16 6 O -0.26 -5.90 7.98 -40.73 -0.33 -6.22 16 7 C 0.09 2.16 5.07 37.16 0.19 2.35 16 8 C 0.05 1.16 2.03 -155.62 -0.32 0.85 16 9 C -0.48 -13.22 9.00 -34.44 -0.31 -13.53 16 10 H 0.07 1.84 7.87 -52.49 -0.41 1.43 16 11 C 0.07 1.80 5.04 -17.82 -0.09 1.71 16 12 N -0.88 -24.10 11.07 55.43 0.61 -23.49 16 13 Si 0.89 21.05 29.58 -169.99 -5.03 16.02 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 16 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 17 C -0.19 -4.33 9.76 -26.73 -0.26 -4.59 16 18 C -0.19 -4.33 9.89 -26.69 -0.26 -4.59 16 19 C -0.14 -2.37 6.88 -79.65 -0.55 -2.92 16 20 N 0.04 0.79 4.45 34.11 0.15 0.94 16 21 O -0.20 -3.66 18.53 -29.46 -0.55 -4.20 16 22 O -0.11 -2.50 17.29 -36.45 -0.63 -3.13 16 23 C 0.02 0.25 9.35 -39.32 -0.37 -0.12 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 28 H 0.13 3.33 5.33 -51.93 -0.28 3.05 16 29 H 0.04 0.95 7.78 -51.93 -0.40 0.55 16 30 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 31 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 32 H 0.07 1.51 8.14 -51.92 -0.42 1.09 16 33 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 34 H 0.06 1.37 8.03 -51.93 -0.42 0.95 16 35 H 0.16 1.65 7.70 -52.48 -0.40 1.25 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -30.46 312.54 -7.72 -38.18 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.00 Total: 0.34 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.54 Total: -14.00 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.64 Total: -31.70 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -1.50 Total: -13.55 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.46 -7.72 -38.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594896778.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.478 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds