Wall clock time and date at job start Tue Mar 31 2020 01:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38089 * 120.35559 * 2 1 4 4 N 1.31932 * 120.83701 * 179.70589 * 3 2 1 5 5 C 1.32275 * 121.64323 * 0.55948 * 4 3 2 6 6 O 1.35682 * 119.68563 * 179.71280 * 5 4 3 7 7 C 1.42907 * 116.99526 * 355.24591 * 6 5 4 8 8 C 1.53001 * 109.46873 * 184.77507 * 7 6 5 9 9 C 1.50697 * 115.56070 * 268.93356 * 8 7 6 10 10 H 1.07996 * 120.00109 * 142.48066 * 9 8 7 11 11 C 1.37874 * 120.00120 * 322.47389 * 9 8 7 12 12 N 1.31525 * 119.99892 * 342.76845 * 11 9 8 13 13 Si 1.86795 * 120.00267 * 162.76879 * 11 9 8 14 14 H 1.48498 * 109.47149 * 90.00178 * 13 11 9 15 15 H 1.48499 * 109.47242 * 210.00091 * 13 11 9 16 16 H 1.48499 * 109.46848 * 330.00171 * 13 11 9 17 17 C 1.53002 * 117.49992 * 54.62031 * 8 7 6 18 18 C 1.52997 * 60.03416 * 107.47593 * 17 8 7 19 19 C 1.38879 * 120.63157 * 359.44422 * 5 4 3 20 20 N 1.48002 * 120.44067 * 180.29342 * 19 5 4 21 21 O 1.21798 * 119.99722 * 184.30402 * 20 19 5 22 22 O 1.21799 * 120.00001 * 4.30522 * 20 19 5 23 23 C 1.38415 * 119.11444 * 0.26576 * 19 5 4 24 24 H 1.09003 * 109.47078 * 270.01729 * 1 2 3 25 25 H 1.08998 * 109.47189 * 30.02145 * 1 2 3 26 26 H 1.09006 * 109.47068 * 150.02249 * 1 2 3 27 27 H 1.08005 * 119.57952 * 359.95938 * 3 2 1 28 28 H 1.08996 * 109.47074 * 64.77684 * 7 6 5 29 29 H 1.08998 * 109.46925 * 304.77420 * 7 6 5 30 30 H 0.96995 * 119.99666 * 185.02354 * 12 11 9 31 31 H 1.08996 * 117.50162 * 214.98314 * 17 8 7 32 32 H 1.09009 * 117.49798 * 359.97438 * 17 8 7 33 33 H 1.09003 * 117.49835 * 107.49795 * 18 17 8 34 34 H 1.08999 * 117.50332 * 252.52419 * 18 17 8 35 35 H 1.08003 * 120.75612 * 179.97438 * 23 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.1916 0.0000 4 7 3.5241 1.2027 0.0058 5 6 4.2275 0.0825 0.0008 6 8 5.5831 0.1403 0.0012 7 6 6.1772 1.4362 -0.0984 8 6 7.6970 1.2938 -0.2021 9 6 8.4432 1.3177 1.1069 10 1 9.3013 0.6781 1.2511 11 6 8.0303 2.1562 2.1205 12 7 7.2247 3.1614 1.8554 13 14 8.6153 1.8647 3.8704 14 1 9.8768 2.6131 4.1018 15 1 7.5785 2.3354 4.8238 16 1 8.8554 0.4139 4.0768 17 6 8.2485 0.3983 -1.3133 18 6 8.3839 1.9186 -1.4192 19 6 3.5918 -1.1523 0.0008 20 7 4.3831 -2.4030 0.0018 21 8 3.8197 -3.4800 -0.0774 22 8 5.5975 -2.3553 0.0818 23 6 2.2084 -1.1975 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6638 2.1263 -0.0007 28 1 5.9265 2.0198 0.7874 29 1 5.7982 1.9423 -0.9863 30 1 6.9924 3.7938 2.5531 31 1 9.1509 -0.1736 -1.0976 32 1 7.5285 -0.0899 -1.9703 33 1 9.3755 2.3470 -1.2730 34 1 7.7527 2.4308 -2.1454 35 1 1.6867 -2.1432 0.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594896778.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:17 Heat of formation + Delta-G solvation = 5.070558 kcal Electronic energy + Delta-G solvation = -21765.462176 eV Core-core repulsion = 18346.804704 eV Total energy + Delta-G solvation = -3418.657471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.30166 -41.81974 -39.74509 -37.88500 -37.44913 -34.60013 -34.31701 -33.68668 -28.91949 -27.96103 -27.72990 -27.20001 -24.52598 -23.24876 -22.95316 -21.22135 -20.16933 -19.86580 -19.35904 -18.70422 -18.52323 -17.70905 -17.22857 -16.54535 -15.96412 -15.83985 -15.28923 -14.75501 -14.73215 -14.30073 -13.83121 -13.62891 -13.49810 -13.03524 -12.95028 -12.89159 -12.70138 -12.40205 -12.25243 -12.22599 -12.17212 -12.01691 -11.63363 -11.45770 -11.14225 -10.99395 -10.70905 -10.13696 -9.72172 -8.21678 -6.24512 -1.27130 -0.17289 0.20465 0.35036 1.34342 1.38132 1.49880 1.74371 2.23847 2.35148 2.87461 2.95144 3.19157 3.44194 3.55677 3.66943 3.88204 4.13691 4.28411 4.34988 4.47734 4.50130 4.75065 4.81618 4.88393 4.89785 4.93950 5.05314 5.12804 5.23223 5.38347 5.43911 5.47631 5.79832 6.10477 6.29741 6.37500 6.56117 6.70010 7.33232 8.81554 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016740 B = 0.006005 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.190255 B = 4661.509625 C = 5000.170501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.165 4.165 3 C 0.193 3.807 4 N -0.547 5.547 5 C 0.363 3.637 6 O -0.286 6.286 7 C 0.111 3.889 8 C 0.010 3.990 9 C -0.508 4.508 10 H 0.054 0.946 11 C 0.028 3.972 12 N -0.898 5.898 13 Si 0.947 3.053 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.276 1.276 17 C -0.179 4.179 18 C -0.178 4.178 19 C -0.150 4.150 20 N 0.043 4.957 21 O -0.150 6.150 22 O -0.206 6.206 23 C 0.020 3.980 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.218 0.782 28 H 0.099 0.901 29 H 0.041 0.959 30 H 0.267 0.733 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.713 -3.225 -3.891 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.168 4.168 3 C 0.036 3.964 4 N -0.273 5.273 5 C 0.183 3.817 6 O -0.189 6.189 7 C 0.037 3.963 8 C 0.009 3.991 9 C -0.545 4.545 10 H 0.072 0.928 11 C -0.172 4.172 12 N -0.536 5.536 13 Si 0.772 3.228 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.201 1.201 17 C -0.216 4.216 18 C -0.216 4.216 19 C -0.238 4.238 20 N 0.556 4.444 21 O -0.370 6.370 22 O -0.410 6.410 23 C -0.006 4.006 24 H 0.109 0.891 25 H 0.116 0.884 26 H 0.107 0.893 27 H 0.234 0.766 28 H 0.117 0.883 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -17.391 -1.898 -3.759 17.893 hybrid contribution 0.733 -0.904 0.812 1.419 sum -16.658 -2.802 -2.947 17.147 Atomic orbital electron populations 1.20807 0.84538 1.05594 1.04520 1.21271 1.00782 0.90459 1.04289 1.23840 0.86883 1.01150 0.84552 1.68050 1.11765 1.26512 1.20950 1.20022 0.86447 0.88441 0.86836 1.86552 1.13559 1.35926 1.82892 1.22569 0.91972 0.79267 1.02510 1.19041 0.89427 1.00795 0.89830 1.20745 1.13451 1.23062 0.97277 0.92778 1.25618 0.95183 0.94188 1.02244 1.69906 1.36431 1.12715 1.34509 0.85715 0.78480 0.78550 0.80050 1.19209 1.20394 1.20111 1.22707 1.02444 0.92632 1.03807 1.23024 1.01970 0.94551 1.02060 1.21554 0.93653 0.81825 1.26773 1.43489 1.01481 1.02367 0.97098 1.94382 1.73238 1.17115 1.52310 1.94734 0.95811 1.94324 1.56085 1.21710 0.87612 1.03099 0.88140 0.89094 0.88412 0.89323 0.76609 0.88314 0.94058 0.92338 0.90031 0.90436 0.89877 0.90016 0.78829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.03 71.24 0.71 0.10 16 2 C -0.16 -2.74 5.90 -19.77 -0.12 -2.86 16 3 C 0.19 4.12 10.85 84.64 0.92 5.04 16 4 N -0.55 -18.86 9.21 -308.93 -2.85 -21.70 16 5 C 0.36 14.56 7.47 84.78 0.63 15.20 16 6 O -0.29 -13.98 7.98 -68.99 -0.55 -14.53 16 7 C 0.11 5.59 5.07 71.98 0.37 5.95 16 8 C 0.01 0.50 2.03 -52.90 -0.11 0.40 16 9 C -0.51 -29.10 9.00 25.60 0.23 -28.87 16 10 H 0.05 3.12 7.87 -2.91 -0.02 3.10 16 11 C 0.03 1.56 5.04 84.65 0.43 1.99 16 12 N -0.90 -50.39 11.07 21.45 0.24 -50.15 16 13 Si 0.95 44.23 29.58 68.60 2.03 46.26 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 17 C -0.18 -8.35 9.76 30.59 0.30 -8.05 16 18 C -0.18 -8.26 9.89 30.62 0.30 -7.95 16 19 C -0.15 -5.16 6.88 36.57 0.25 -4.91 16 20 N 0.04 1.71 4.45 -46.01 -0.20 1.50 16 21 O -0.15 -5.27 18.53 18.89 0.35 -4.92 16 22 O -0.21 -9.71 17.29 25.57 0.44 -9.26 16 23 C 0.02 0.45 9.35 22.44 0.21 0.66 16 24 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.10 0.28 8.09 -2.39 -0.02 0.26 16 26 H 0.09 0.37 8.09 -2.38 -0.02 0.35 16 27 H 0.22 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.10 5.48 5.33 -2.39 -0.01 5.47 16 29 H 0.04 1.98 7.78 -2.39 -0.02 1.96 16 30 H 0.27 14.14 8.32 -92.71 -0.77 13.37 16 31 H 0.08 3.74 8.14 -2.39 -0.02 3.72 16 32 H 0.08 3.46 8.14 -2.38 -0.02 3.44 16 33 H 0.08 3.82 8.14 -2.39 -0.02 3.80 16 34 H 0.08 3.46 8.03 -2.39 -0.02 3.44 16 35 H 0.19 3.02 7.70 -2.91 -0.02 3.00 16 Total: -1.00 -71.43 312.54 4.70 -66.73 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.11 Total: 9.39 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 4.13 Total: -23.32 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -2.81 Total: -70.35 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: 0.24 Total: -28.72 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -71.43 4.70 -66.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594896778.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.804 kcal (2) G-P(sol) polarization free energy of solvation -71.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds