Wall clock time and date at job start Tue Mar 31 2020 00:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37725 * 120.04573 * 2 1 4 4 C 1.38978 * 120.08889 * 179.97438 * 3 2 1 5 5 O 1.35711 * 119.90815 * 179.97438 * 4 3 2 6 6 C 1.42904 * 116.99712 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47098 * 180.02562 * 6 5 4 8 8 O 1.21302 * 120.00339 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00353 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00521 * 179.97438 * 9 7 6 11 11 H 1.08009 * 119.99751 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00205 * 180.02562 * 10 9 7 13 13 N 1.31414 * 119.99961 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 119.99928 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46825 * 90.00296 * 14 12 10 16 16 H 1.48502 * 109.47243 * 210.00225 * 14 12 10 17 17 H 1.48499 * 109.47278 * 330.00847 * 14 12 10 18 18 C 1.39014 * 120.17601 * 359.69843 * 4 3 2 19 19 C 1.37683 * 120.09087 * 0.55562 * 18 4 3 20 20 C 1.39714 * 120.04500 * 179.97438 * 2 1 3 21 21 C 1.47598 * 120.08703 * 0.04784 * 20 2 1 22 22 N 1.34779 * 120.00172 * 173.71216 * 21 20 2 23 23 O 1.21584 * 120.00288 * 353.70913 * 21 20 2 24 24 H 1.08998 * 109.47042 * 263.41301 * 1 2 3 25 25 H 1.08996 * 109.46843 * 23.41433 * 1 2 3 26 26 H 1.09004 * 109.46915 * 143.41257 * 1 2 3 27 27 H 1.07997 * 119.95268 * 359.97029 * 3 2 1 28 28 H 1.09007 * 109.46990 * 299.99586 * 6 5 4 29 29 H 1.08993 * 109.47372 * 60.00076 * 6 5 4 30 30 H 0.96999 * 119.99208 * 0.02562 * 9 7 6 31 31 H 0.96997 * 119.99924 * 179.97438 * 13 12 10 32 32 H 1.08001 * 119.95477 * 180.27516 * 18 4 3 33 33 H 1.07990 * 120.04517 * 179.74815 * 19 18 4 34 34 H 0.97012 * 119.99871 * 359.97438 * 22 21 20 35 35 H 0.96995 * 120.00861 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1922 0.0000 4 6 3.5863 1.1932 0.0005 5 8 4.2621 2.3701 0.0000 6 6 5.6894 2.2986 0.0012 7 6 6.2621 3.6925 0.0010 8 8 5.5210 4.6528 -0.0005 9 7 7.5979 3.8722 0.0025 10 6 8.1190 5.1403 0.0018 11 1 7.4591 5.9953 -0.0003 12 6 9.4961 5.3255 0.0029 13 7 9.9956 6.5410 0.0017 14 14 10.6374 3.8468 0.0059 15 1 10.9411 3.4531 -1.3934 16 1 11.8990 4.1966 0.7067 17 1 9.9793 2.7149 0.7066 18 6 4.2860 -0.0080 0.0074 19 6 3.6041 -1.2041 0.0021 20 6 2.2065 -1.2094 0.0005 21 6 1.4715 -2.4893 0.0000 22 7 2.1420 -3.6515 -0.1273 23 8 0.2610 -2.4954 0.1145 24 1 -0.3633 -0.1179 1.0209 25 1 -0.3633 0.9430 -0.4084 26 1 -0.3633 -0.8252 -0.6126 27 1 1.6565 2.1274 -0.0005 28 1 6.0258 1.7681 0.8920 29 1 6.0272 1.7665 -0.8880 30 1 8.1905 3.1043 0.0033 31 1 10.9569 6.6703 0.0028 32 1 5.3660 -0.0030 0.0123 33 1 4.1484 -2.1368 0.0034 34 1 3.1078 -3.6468 -0.2190 35 1 1.6590 -4.4927 -0.1280 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594913443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:34 Heat of formation + Delta-G solvation = -109.578691 kcal Electronic energy + Delta-G solvation = -20397.129102 eV Core-core repulsion = 16973.500066 eV Total energy + Delta-G solvation = -3423.629036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 5.24 seconds Orbital eigenvalues (eV) -41.65862 -40.72567 -39.81891 -38.06486 -36.09651 -35.05592 -33.86187 -33.21538 -31.69599 -29.74052 -28.08366 -26.36476 -24.61068 -22.89930 -21.75630 -21.31456 -20.39114 -19.09460 -18.70122 -18.05085 -17.40653 -17.31296 -17.01660 -16.38173 -16.05031 -15.92710 -15.41578 -15.25124 -14.92458 -14.67706 -14.24277 -14.22574 -14.15586 -13.83218 -13.46590 -13.17109 -12.96155 -12.91230 -12.44652 -11.99816 -11.96565 -11.91023 -11.57058 -10.80820 -10.59871 -10.57122 -10.33198 -9.87981 -9.29986 -8.44712 -6.08816 -0.12490 0.29100 1.30988 1.36459 1.46705 1.77190 1.79621 1.85631 2.23041 2.62155 2.79224 3.01872 3.10010 3.66776 3.81762 3.88016 3.96199 4.10400 4.15301 4.20914 4.36051 4.43291 4.74162 4.82268 4.90814 5.03855 5.17653 5.26798 5.46921 5.51350 5.63963 5.86430 5.96517 6.28653 6.48849 6.53166 6.79463 7.27602 7.36852 7.82415 8.72437 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035992 B = 0.003216 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.763475 B = 8704.118360 C = 9459.895243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.006 3.994 3 C -0.184 4.184 4 C 0.149 3.851 5 O -0.315 6.315 6 C 0.058 3.942 7 C 0.443 3.557 8 O -0.618 6.618 9 N -0.574 5.574 10 C -0.336 4.336 11 H 0.054 0.946 12 C -0.012 4.012 13 N -0.930 5.930 14 Si 0.967 3.033 15 H -0.254 1.254 16 H -0.275 1.275 17 H -0.223 1.223 18 C -0.224 4.224 19 C -0.023 4.023 20 C -0.203 4.203 21 C 0.565 3.435 22 N -0.832 5.832 23 O -0.578 6.578 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.396 0.604 31 H 0.282 0.718 32 H 0.167 0.833 33 H 0.175 0.825 34 H 0.416 0.584 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 -26.454 -0.490 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.005 3.995 3 C -0.202 4.202 4 C 0.103 3.897 5 O -0.227 6.227 6 C -0.020 4.020 7 C 0.231 3.769 8 O -0.503 6.503 9 N -0.216 5.216 10 C -0.465 4.465 11 H 0.072 0.928 12 C -0.212 4.212 13 N -0.570 5.570 14 Si 0.786 3.214 15 H -0.178 1.178 16 H -0.201 1.201 17 H -0.146 1.146 18 C -0.242 4.242 19 C -0.041 4.041 20 C -0.207 4.207 21 C 0.353 3.647 22 N -0.397 5.397 23 O -0.460 6.460 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.232 0.768 31 H 0.091 0.909 32 H 0.184 0.816 33 H 0.192 0.808 34 H 0.248 0.752 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -8.749 -25.303 -0.411 26.776 hybrid contribution 1.112 0.026 -0.009 1.112 sum -7.637 -25.277 -0.420 26.409 Atomic orbital electron populations 1.21043 0.89529 1.03239 1.03438 1.19895 0.97008 0.90862 0.91711 1.20380 0.91284 0.98971 1.09610 1.19641 0.92097 0.85153 0.92848 1.86136 1.20011 1.29010 1.87584 1.22545 0.78727 0.94234 1.06485 1.20460 0.82526 0.91301 0.82633 1.90599 1.59763 1.44665 1.55282 1.41758 1.05432 1.07518 1.66893 1.18983 0.92125 0.84109 1.51283 0.92826 1.26207 0.98191 1.01327 0.95446 1.69803 1.14324 1.23673 1.49164 0.85343 0.77875 0.77939 0.80233 1.17793 1.20055 1.14553 1.21552 1.02203 0.90855 1.09637 1.21418 0.91741 0.99077 0.91882 1.19748 0.94540 0.92734 1.13637 1.18190 0.86446 0.84949 0.75108 1.43572 1.12704 1.07672 1.75711 1.90757 1.15469 1.87826 1.51935 0.90702 0.91369 0.89436 0.85313 0.85822 0.85674 0.76776 0.90862 0.81594 0.80814 0.75209 0.75538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 8.72 71.24 0.62 -2.00 16 2 C 0.01 0.15 5.91 -19.63 -0.12 0.04 16 3 C -0.18 -4.87 9.60 22.33 0.21 -4.65 16 4 C 0.15 3.92 6.70 22.63 0.15 4.07 16 5 O -0.32 -10.61 9.66 -71.29 -0.69 -11.30 16 6 C 0.06 1.66 5.21 71.23 0.37 2.03 16 7 C 0.44 19.74 7.86 87.65 0.69 20.43 16 8 O -0.62 -35.57 16.08 15.94 0.26 -35.32 16 9 N -0.57 -25.68 5.09 -306.97 -1.56 -27.25 16 10 C -0.34 -19.19 10.16 84.04 0.85 -18.33 16 11 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 13 N -0.93 -54.64 13.96 21.66 0.30 -54.33 16 14 Si 0.97 35.90 27.74 68.60 1.90 37.80 16 15 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 16 H -0.28 -10.28 7.11 99.48 0.71 -9.58 16 17 H -0.22 -6.56 6.52 99.48 0.65 -5.91 16 18 C -0.22 -3.92 9.01 22.32 0.20 -3.71 16 19 C -0.02 -0.31 9.51 22.51 0.21 -0.10 16 20 C -0.20 -3.94 5.87 -20.08 -0.12 -4.06 16 21 C 0.57 10.53 7.97 86.71 0.69 11.23 16 22 N -0.83 -7.14 8.82 -175.77 -1.55 -8.69 16 23 O -0.58 -15.06 14.17 -3.98 -0.06 -15.11 16 24 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.07 1.37 8.04 -2.39 -0.02 1.35 16 26 H 0.09 2.13 5.85 -2.38 -0.01 2.12 16 27 H 0.13 3.52 8.05 -2.91 -0.02 3.50 16 28 H 0.12 2.54 7.64 -2.38 -0.02 2.52 16 29 H 0.13 2.54 7.66 -2.39 -0.02 2.52 16 30 H 0.40 13.74 5.76 -92.71 -0.53 13.21 16 31 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.17 1.86 6.28 -2.91 -0.02 1.84 16 33 H 0.17 0.66 6.45 -2.92 -0.02 0.64 16 34 H 0.42 0.83 6.89 -92.70 -0.64 0.19 16 35 H 0.41 2.54 8.93 -92.71 -0.83 1.71 16 Total: -1.00 -85.83 303.65 1.96 -83.86 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -0.88 Total: 25.59 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 4.24 Total: 4.75 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -2.81 Total: -90.27 kcal Atomic # 8 Polarization: -61.24 SS G_CDS: -0.49 Total: -61.73 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 1.90 Total: 37.80 kcal Total: -85.83 1.96 -83.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594913443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.716 kcal (2) G-P(sol) polarization free energy of solvation -85.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.24 seconds