Wall clock time and date at job start Tue Mar 31 2020 00:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99978 * 2 1 4 4 H 1.48498 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47185 * 300.00477 * 3 2 1 6 6 H 1.48506 * 109.46864 * 60.00119 * 3 2 1 7 7 C 1.37881 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47300 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47220 * 179.97438 * 11 10 9 13 13 O 1.21276 * 119.99955 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00435 * 179.97438 * 12 11 10 15 15 C 1.39419 * 120.00511 * 185.08593 * 14 12 11 16 16 C 1.39012 * 119.63280 * 174.92931 * 15 14 12 17 17 C 1.39599 * 118.92975 * 179.74612 * 16 15 14 18 18 C 1.48056 * 120.89355 * 180.22972 * 17 16 15 19 19 O 1.21432 * 120.00002 * 0.02562 * 18 17 16 20 20 O 1.34673 * 120.00264 * 179.97438 * 18 17 16 21 21 C 1.40022 * 118.21337 * 0.25405 * 17 16 15 22 22 C 1.37989 * 119.15571 * 0.02562 * 21 17 16 23 23 N 1.31889 * 120.99302 * 0.02562 * 22 21 17 24 24 H 0.96999 * 120.00229 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47454 * 59.99962 * 9 7 2 26 26 H 1.09006 * 109.47072 * 300.00206 * 9 7 2 27 27 H 1.08998 * 109.47310 * 60.00030 * 10 9 7 28 28 H 1.09006 * 109.46795 * 299.99820 * 10 9 7 29 29 H 1.08998 * 109.47021 * 59.99723 * 11 10 9 30 30 H 1.09003 * 109.46454 * 299.99713 * 11 10 9 31 31 H 0.97009 * 119.99420 * 5.08206 * 14 12 11 32 32 H 1.07996 * 120.54195 * 0.02562 * 16 15 14 33 33 H 0.96703 * 117.00268 * 179.97438 * 20 18 17 34 34 H 1.08006 * 120.41989 * 179.97438 * 21 17 16 35 35 H 1.07999 * 119.51104 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0018 13 8 3.6520 -5.9109 -0.0013 14 7 2.0106 -7.4032 -0.0019 15 6 2.9121 -8.4614 0.1045 16 6 2.4351 -9.7628 0.2102 17 6 3.3509 -10.8116 0.3106 18 6 2.8908 -12.2146 0.4201 19 8 1.7027 -12.4656 0.4228 20 8 3.7900 -13.2127 0.5155 21 6 4.7162 -10.5011 0.3056 22 6 5.1050 -9.1811 0.2030 23 7 4.2117 -8.2152 0.1108 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.8540 -5.0446 -0.8914 30 1 0.8535 -5.0451 0.8887 31 1 1.0599 -7.5816 -0.0760 32 1 1.3732 -9.9598 0.2100 33 1 3.4418 -14.1122 0.5853 34 1 5.4556 -11.2847 0.3819 35 1 6.1566 -8.9350 0.1981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595282890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:45 Heat of formation + Delta-G solvation = -116.881914 kcal Electronic energy + Delta-G solvation = -19949.297575 eV Core-core repulsion = 16525.351848 eV Total energy + Delta-G solvation = -3423.945727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.10100 -41.13056 -39.97974 -37.20401 -36.31343 -35.90758 -34.07589 -33.76898 -31.48372 -29.57458 -26.82884 -26.01271 -24.30211 -23.36718 -21.97856 -21.08938 -19.78273 -18.85931 -18.59449 -17.96184 -17.53395 -16.98864 -16.76334 -16.73392 -16.49460 -16.10477 -15.55610 -15.40595 -14.96600 -14.56149 -14.38809 -14.26679 -13.76289 -13.13130 -13.10812 -12.69586 -12.63750 -12.52529 -12.38655 -12.03265 -11.93462 -11.54172 -11.49597 -11.29960 -11.11370 -11.11043 -10.53771 -10.18897 -9.41298 -8.19873 -6.29287 -0.53695 -0.05111 1.39225 1.39689 1.40201 1.53758 1.60447 1.71332 2.01484 2.42172 2.78012 3.13322 3.30552 3.65193 3.79155 3.87664 3.92409 4.16544 4.27385 4.28571 4.56546 4.67896 4.80528 4.92699 4.97476 5.10073 5.13024 5.21703 5.45601 5.54966 5.60130 5.76923 5.88054 6.13728 6.29216 6.85573 6.86242 6.88557 7.26231 7.39321 8.91772 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.053214 B = 0.002560 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.051920 B =10935.081270 C =11426.693487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.051 0.949 9 C 0.025 3.975 10 C -0.083 4.083 11 C -0.126 4.126 12 C 0.508 3.492 13 O -0.515 6.515 14 N -0.652 5.652 15 C 0.341 3.659 16 C -0.142 4.142 17 C -0.066 4.066 18 C 0.542 3.458 19 O -0.535 6.535 20 O -0.495 6.495 21 C -0.133 4.133 22 C 0.118 3.882 23 N -0.499 5.499 24 H 0.264 0.736 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.437 0.563 32 H 0.165 0.835 33 H 0.439 0.561 34 H 0.182 0.818 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.898 -28.513 0.742 29.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.069 0.931 9 C -0.012 4.012 10 C -0.121 4.121 11 C -0.166 4.166 12 C 0.296 3.704 13 O -0.386 6.386 14 N -0.301 5.301 15 C 0.110 3.890 16 C -0.166 4.166 17 C -0.076 4.076 18 C 0.386 3.614 19 O -0.425 6.425 20 O -0.309 6.309 21 C -0.155 4.155 22 C -0.040 4.040 23 N -0.215 5.215 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.278 0.722 32 H 0.183 0.817 33 H 0.302 0.698 34 H 0.199 0.801 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 6.668 -26.971 0.660 27.791 hybrid contribution -0.813 -0.355 0.064 0.889 sum 5.856 -27.326 0.723 27.956 Atomic orbital electron populations 1.70068 1.07446 1.27695 1.51740 1.25900 0.95831 1.03046 0.94788 0.85460 0.78904 0.79093 0.77976 1.19254 1.20108 1.20112 1.21720 0.93337 0.92829 1.50457 0.93101 1.19026 0.94208 0.92275 0.95681 1.21170 0.97666 0.92814 1.00431 1.21719 0.97646 0.90869 1.06372 1.21450 0.90158 0.83964 0.74810 1.90772 1.18376 1.84303 1.45154 1.43682 1.10886 1.03855 1.71719 1.18556 0.88101 0.86827 0.95475 1.21635 1.02438 0.89655 1.02863 1.19246 0.94761 0.90055 1.03508 1.20513 0.83141 0.86198 0.71510 1.90911 1.19163 1.85191 1.47285 1.84482 1.41349 1.20946 1.84156 1.22641 0.95282 0.98884 0.98645 1.23223 1.00064 0.87602 0.93098 1.67542 1.01605 1.38778 1.13547 0.92688 0.97874 0.97938 0.94038 0.93968 0.86673 0.86769 0.72223 0.81718 0.69793 0.80096 0.79471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.75 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.32 4.97 29.85 0.15 1.47 16 10 C -0.08 -3.56 4.44 30.60 0.14 -3.42 16 11 C -0.13 -3.89 5.70 29.85 0.17 -3.72 16 12 C 0.51 15.93 7.79 87.66 0.68 16.61 16 13 O -0.51 -20.84 14.24 -3.02 -0.04 -20.88 16 14 N -0.65 -14.97 5.39 -308.52 -1.66 -16.63 16 15 C 0.34 8.24 7.42 132.93 0.99 9.23 16 16 C -0.14 -2.63 9.51 22.78 0.22 -2.41 16 17 C -0.07 -1.08 5.90 -19.91 -0.12 -1.20 16 18 C 0.54 7.97 8.30 70.43 0.58 8.55 16 19 O -0.53 -11.00 17.23 20.06 0.35 -10.65 16 20 O -0.50 -3.64 12.78 -55.82 -0.71 -4.35 16 21 C -0.13 -1.84 9.70 22.64 0.22 -1.62 16 22 C 0.12 2.23 11.16 84.63 0.94 3.17 16 23 N -0.50 -13.93 7.85 -193.20 -1.52 -15.44 16 24 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 25 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 26 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 27 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 28 H 0.04 1.90 8.10 -2.38 -0.02 1.89 16 29 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.44 6.22 8.70 -92.70 -0.81 5.42 16 32 H 0.17 2.45 7.74 -2.91 -0.02 2.43 16 33 H 0.44 -0.70 9.11 -74.06 -0.67 -1.37 16 34 H 0.18 1.29 7.71 -2.91 -0.02 1.26 16 35 H 0.19 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -82.10 317.24 3.05 -79.05 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -0.34 Total: 2.11 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 4.67 Total: -4.50 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -2.89 Total: -88.06 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.41 Total: -35.89 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -82.10 3.05 -79.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595282890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.828 kcal (2) G-P(sol) polarization free energy of solvation -82.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds