Wall clock time and date at job start Tue Mar 31 2020 01:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35351 * 119.65389 * 2 1 4 4 C 1.40190 * 119.95080 * 179.97438 * 3 2 1 5 5 C 1.36402 * 119.26403 * 0.02562 * 4 3 2 6 6 N 1.48005 * 120.34577 * 179.97438 * 5 4 3 7 7 O 1.21800 * 120.00184 * 359.97438 * 6 5 4 8 8 O 1.21806 * 119.99882 * 179.97438 * 6 5 4 9 9 C 1.40538 * 119.30756 * 359.71191 * 5 4 3 10 10 O 1.22057 * 119.99170 * 180.31491 * 9 5 4 11 11 N 1.34668 * 120.02394 * 0.55626 * 9 5 4 12 12 C 1.46494 * 119.62370 * 179.73757 * 11 9 5 13 13 C 1.53002 * 109.47018 * 275.59891 * 12 11 9 14 14 C 1.50701 * 115.55752 * 319.37699 * 13 12 11 15 15 H 1.07998 * 120.00023 * 92.41991 * 14 13 12 16 16 C 1.37877 * 119.99945 * 272.40945 * 14 13 12 17 17 N 1.31513 * 120.00061 * 181.20030 * 16 14 13 18 18 Si 1.86802 * 120.00338 * 1.20410 * 16 14 13 19 19 H 1.48496 * 109.47102 * 88.43767 * 18 16 14 20 20 H 1.48501 * 109.47105 * 208.44395 * 18 16 14 21 21 H 1.48504 * 109.46730 * 328.44006 * 18 16 14 22 22 C 1.53002 * 117.49929 * 173.69108 * 13 12 11 23 23 C 1.52999 * 60.00024 * 252.50730 * 22 13 12 24 24 H 1.08999 * 109.46891 * 274.12953 * 1 2 3 25 25 H 1.09008 * 109.46941 * 34.11937 * 1 2 3 26 26 H 1.08994 * 109.47655 * 154.11984 * 1 2 3 27 27 H 1.08001 * 120.02068 * 0.02890 * 3 2 1 28 28 H 1.07992 * 120.36813 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47365 * 155.59549 * 12 11 9 30 30 H 1.09002 * 109.47546 * 35.59351 * 12 11 9 31 31 H 0.97003 * 120.00793 * 180.02562 * 17 16 14 32 32 H 1.09005 * 117.49662 * 145.01385 * 22 13 12 33 33 H 1.08999 * 117.49830 * 0.02562 * 22 13 12 34 34 H 1.08993 * 117.49880 * 107.48852 * 23 22 13 35 35 H 1.09003 * 117.49573 * 252.51393 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1767 1.1762 0.0000 4 6 3.5785 1.1835 0.0005 5 6 4.2515 -0.0030 0.0005 6 7 5.7314 -0.0232 0.0005 7 8 6.3548 1.0231 0.0001 8 8 6.3259 -1.0864 0.0010 9 6 3.5249 -1.2059 0.0061 10 8 4.1144 -2.2747 0.0120 11 7 2.1785 -1.1800 0.0001 12 6 1.4299 -2.4392 0.0002 13 6 1.2966 -2.9534 -1.4346 14 6 1.0106 -1.9037 -2.4775 15 1 1.8254 -1.4335 -3.0080 16 6 -0.2912 -1.5438 -2.7544 17 7 -0.5420 -0.6449 -3.6810 18 14 -1.6988 -2.3328 -1.8133 19 1 -1.9713 -1.5494 -0.5816 20 1 -2.9144 -2.3533 -2.6661 21 1 -1.3296 -3.7230 -1.4442 22 6 0.6731 -4.3362 -1.6345 23 6 2.1752 -4.1366 -1.8456 24 1 -0.3633 0.0740 1.0250 25 1 -0.3633 0.8508 -0.5765 26 1 -0.3634 -0.9245 -0.4485 27 1 1.6313 2.1085 0.0005 28 1 4.1197 2.1181 0.0010 29 1 0.4380 -2.2722 0.4200 30 1 1.9599 -3.1770 0.6027 31 1 -1.4579 -0.3913 -3.8756 32 1 0.0559 -4.4867 -2.5203 33 1 0.3574 -4.8794 -0.7439 34 1 2.8482 -4.5487 -1.0938 35 1 2.5463 -4.1558 -2.8704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596268972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:28 Heat of formation + Delta-G solvation = 36.855619 kcal Electronic energy + Delta-G solvation = -22697.663060 eV Core-core repulsion = 19280.383893 eV Total energy + Delta-G solvation = -3417.279168 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.92374 -40.94025 -37.33966 -37.12609 -35.80300 -34.29496 -32.56972 -31.63877 -28.70399 -27.58825 -25.81392 -24.84102 -22.86914 -22.15641 -21.86605 -19.55857 -18.96950 -18.36444 -17.10465 -17.03632 -16.80098 -16.04681 -15.77484 -15.40033 -15.07954 -14.24592 -13.83509 -13.44831 -13.21181 -13.09519 -12.88504 -12.80399 -12.28257 -11.81200 -11.41964 -11.33428 -10.99666 -10.95278 -10.73770 -10.68733 -10.55373 -10.45443 -10.10539 -9.79323 -9.62504 -9.04675 -8.97109 -8.74193 -8.01683 -6.43872 -4.48614 0.15976 1.65074 1.84822 1.88974 2.82002 2.86789 3.08780 3.11943 3.62386 4.03345 4.40780 4.44097 4.66799 4.79667 4.90492 4.93292 5.25522 5.43743 5.50266 5.51462 5.65366 5.71587 5.86110 5.93217 5.97714 6.05247 6.17563 6.35215 6.45998 6.58829 6.78697 6.86114 6.99354 7.13678 7.39980 8.08302 8.19103 8.29350 8.60752 9.14524 10.66566 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022714 B = 0.007457 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.437764 B = 3753.990137 C = 4351.253483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.281 3.719 3 C -0.274 4.274 4 C 0.089 3.911 5 C -0.216 4.216 6 N 0.064 4.936 7 O -0.211 6.211 8 O -0.144 6.144 9 C 0.543 3.457 10 O -0.498 6.498 11 N -0.451 5.451 12 C 0.114 3.886 13 C -0.035 4.035 14 C -0.487 4.487 15 H 0.075 0.925 16 C 0.082 3.918 17 N -0.883 5.883 18 Si 0.836 3.164 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.229 1.229 22 C -0.174 4.174 23 C -0.167 4.167 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.162 0.838 28 H 0.156 0.844 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.268 0.732 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.792 2.793 9.276 10.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.163 3.837 3 C -0.296 4.296 4 C 0.065 3.935 5 C -0.307 4.307 6 N 0.575 4.425 7 O -0.413 6.413 8 O -0.365 6.365 9 C 0.341 3.659 10 O -0.375 6.375 11 N -0.155 5.155 12 C -0.006 4.006 13 C -0.037 4.037 14 C -0.525 4.525 15 H 0.093 0.907 16 C -0.122 4.122 17 N -0.519 5.519 18 Si 0.663 3.337 19 H -0.194 1.194 20 H -0.213 1.213 21 H -0.152 1.152 22 C -0.212 4.212 23 C -0.204 4.204 24 H 0.108 0.892 25 H 0.121 0.879 26 H 0.126 0.874 27 H 0.179 0.821 28 H 0.174 0.826 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.195 2.178 9.159 9.941 hybrid contribution -0.561 -0.087 0.106 0.578 sum -3.756 2.091 9.264 10.213 Atomic orbital electron populations 1.21816 0.87464 1.08166 1.03505 1.21029 0.96015 0.85211 0.81405 1.20319 0.92264 0.97949 1.19112 1.21386 0.94595 0.97355 0.80155 1.21392 0.81354 0.96362 1.31572 1.42770 1.02315 1.00256 0.97128 1.94450 1.67348 1.22449 1.57004 1.94589 1.69853 1.19268 1.52772 1.15747 0.81134 0.89300 0.79734 1.91055 1.66596 1.30637 1.49232 1.45410 1.07016 1.08087 1.55029 1.22001 0.95109 0.83072 1.00454 1.19686 1.02849 0.89129 0.92004 1.20214 0.93569 1.19801 1.18867 0.90683 1.25022 0.98276 0.94342 0.94585 1.69882 1.20692 1.30826 1.30453 0.87829 0.82343 0.83166 0.80373 1.19442 1.21332 1.15225 1.22993 0.95998 1.00297 1.01906 1.22960 0.92271 1.03341 1.01809 0.89232 0.87926 0.87419 0.82066 0.82626 0.89461 0.89196 0.92134 0.89139 0.90760 0.90050 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.37 36.01 0.30 -1.85 16 2 C 0.28 4.39 5.95 -81.88 -0.49 3.91 16 3 C -0.27 -3.69 9.63 -39.88 -0.38 -4.08 16 4 C 0.09 1.32 9.60 -39.51 -0.38 0.95 16 5 C -0.22 -4.13 6.88 -79.75 -0.55 -4.68 16 6 N 0.06 1.32 4.45 34.06 0.15 1.47 16 7 O -0.21 -4.14 18.47 -29.46 -0.54 -4.68 16 8 O -0.14 -3.27 17.44 -36.39 -0.63 -3.91 16 9 C 0.54 11.18 7.36 -15.44 -0.11 11.07 16 10 O -0.50 -11.59 14.91 -16.91 -0.25 -11.84 16 11 N -0.45 -8.23 2.16 -115.16 -0.25 -8.48 16 12 C 0.11 2.04 4.72 -4.04 -0.02 2.02 16 13 C -0.04 -0.73 1.19 -155.66 -0.19 -0.91 16 14 C -0.49 -11.79 7.67 -34.44 -0.26 -12.05 16 15 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 16 C 0.08 1.94 4.59 -17.82 -0.08 1.86 16 17 N -0.88 -23.03 13.96 55.43 0.77 -22.26 16 18 Si 0.84 16.63 23.73 -169.99 -4.03 12.60 16 19 H -0.27 -4.69 5.99 56.52 0.34 -4.36 16 20 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.23 -4.26 4.47 56.52 0.25 -4.01 16 22 C -0.17 -3.29 6.75 -26.73 -0.18 -3.47 16 23 C -0.17 -3.37 9.88 -26.73 -0.26 -3.63 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.10 1.37 8.10 -51.92 -0.42 0.95 16 26 H 0.11 1.81 0.46 -51.93 -0.02 1.79 16 27 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.16 1.86 7.62 -52.49 -0.40 1.46 16 29 H 0.09 1.35 5.49 -51.93 -0.29 1.06 16 30 H 0.09 1.54 7.38 -51.93 -0.38 1.16 16 31 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 32 H 0.09 1.79 7.02 -51.93 -0.36 1.42 16 33 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 34 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 35 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 LS Contribution 288.28 15.07 4.34 4.34 Total: -1.00 -30.03 288.28 -6.81 -36.83 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.76 Total: 6.80 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.61 Total: -10.88 kcal Atomic # 7 Polarization: -29.94 SS G_CDS: 0.68 Total: -29.27 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -1.43 Total: -20.43 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -4.03 Total: 12.60 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.03 -6.81 -36.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596268972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.688 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds