Wall clock time and date at job start Tue Mar 31 2020 01:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35351 * 119.65389 * 2 1 4 4 C 1.40190 * 119.95080 * 179.97438 * 3 2 1 5 5 C 1.36402 * 119.26403 * 0.02562 * 4 3 2 6 6 N 1.48005 * 120.34577 * 179.97438 * 5 4 3 7 7 O 1.21800 * 120.00184 * 359.97438 * 6 5 4 8 8 O 1.21806 * 119.99882 * 179.97438 * 6 5 4 9 9 C 1.40538 * 119.30756 * 359.71191 * 5 4 3 10 10 O 1.22057 * 119.99170 * 180.31491 * 9 5 4 11 11 N 1.34668 * 120.02394 * 0.55626 * 9 5 4 12 12 C 1.46494 * 119.62370 * 179.73757 * 11 9 5 13 13 C 1.53002 * 109.47018 * 275.59891 * 12 11 9 14 14 C 1.50701 * 115.55752 * 319.37699 * 13 12 11 15 15 H 1.07998 * 120.00023 * 92.41991 * 14 13 12 16 16 C 1.37877 * 119.99945 * 272.40945 * 14 13 12 17 17 N 1.31513 * 120.00061 * 181.20030 * 16 14 13 18 18 Si 1.86802 * 120.00338 * 1.20410 * 16 14 13 19 19 H 1.48496 * 109.47102 * 88.43767 * 18 16 14 20 20 H 1.48501 * 109.47105 * 208.44395 * 18 16 14 21 21 H 1.48504 * 109.46730 * 328.44006 * 18 16 14 22 22 C 1.53002 * 117.49929 * 173.69108 * 13 12 11 23 23 C 1.52999 * 60.00024 * 252.50730 * 22 13 12 24 24 H 1.08999 * 109.46891 * 274.12953 * 1 2 3 25 25 H 1.09008 * 109.46941 * 34.11937 * 1 2 3 26 26 H 1.08994 * 109.47655 * 154.11984 * 1 2 3 27 27 H 1.08001 * 120.02068 * 0.02890 * 3 2 1 28 28 H 1.07992 * 120.36813 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47365 * 155.59549 * 12 11 9 30 30 H 1.09002 * 109.47546 * 35.59351 * 12 11 9 31 31 H 0.97003 * 120.00793 * 180.02562 * 17 16 14 32 32 H 1.09005 * 117.49662 * 145.01385 * 22 13 12 33 33 H 1.08999 * 117.49830 * 0.02562 * 22 13 12 34 34 H 1.08993 * 117.49880 * 107.48852 * 23 22 13 35 35 H 1.09003 * 117.49573 * 252.51393 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1767 1.1762 0.0000 4 6 3.5785 1.1835 0.0005 5 6 4.2515 -0.0030 0.0005 6 7 5.7314 -0.0232 0.0005 7 8 6.3548 1.0231 0.0001 8 8 6.3259 -1.0864 0.0010 9 6 3.5249 -1.2059 0.0061 10 8 4.1144 -2.2747 0.0120 11 7 2.1785 -1.1800 0.0001 12 6 1.4299 -2.4392 0.0002 13 6 1.2966 -2.9534 -1.4346 14 6 1.0106 -1.9037 -2.4775 15 1 1.8254 -1.4335 -3.0080 16 6 -0.2912 -1.5438 -2.7544 17 7 -0.5420 -0.6449 -3.6810 18 14 -1.6988 -2.3328 -1.8133 19 1 -1.9713 -1.5494 -0.5816 20 1 -2.9144 -2.3533 -2.6661 21 1 -1.3296 -3.7230 -1.4442 22 6 0.6731 -4.3362 -1.6345 23 6 2.1752 -4.1366 -1.8456 24 1 -0.3633 0.0740 1.0250 25 1 -0.3633 0.8508 -0.5765 26 1 -0.3634 -0.9245 -0.4485 27 1 1.6313 2.1085 0.0005 28 1 4.1197 2.1181 0.0010 29 1 0.4380 -2.2722 0.4200 30 1 1.9599 -3.1770 0.6027 31 1 -1.4579 -0.3913 -3.8756 32 1 0.0559 -4.4867 -2.5203 33 1 0.3574 -4.8794 -0.7439 34 1 2.8482 -4.5487 -1.0938 35 1 2.5463 -4.1558 -2.8704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596268972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:26 Heat of formation + Delta-G solvation = 18.641827 kcal Electronic energy + Delta-G solvation = -22698.452869 eV Core-core repulsion = 19280.383893 eV Total energy + Delta-G solvation = -3418.068977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -43.39312 -42.42478 -38.92158 -38.59173 -37.37081 -35.67046 -34.37321 -32.97407 -30.05315 -29.00913 -27.61752 -26.25671 -24.24407 -23.60649 -23.38991 -21.17842 -20.47987 -19.88578 -18.69114 -18.59273 -18.32792 -17.44466 -17.19650 -16.97742 -16.62618 -15.51723 -15.36259 -14.80567 -14.66133 -14.58314 -14.37646 -14.00107 -13.57350 -13.17926 -12.98363 -12.70341 -12.60683 -12.43158 -12.28864 -12.24509 -12.18106 -11.90530 -11.69337 -11.38207 -11.17976 -10.72489 -10.61806 -10.38976 -9.38804 -8.27342 -6.40822 -1.20615 0.13322 0.41142 0.59984 1.31558 1.46837 1.51287 1.58281 2.24107 2.37509 3.01555 3.03831 3.17840 3.31791 3.62887 3.71744 3.86426 4.01737 4.26611 4.30990 4.37498 4.42812 4.52605 4.59049 4.69430 4.81372 4.82051 4.95786 5.02711 5.13711 5.30378 5.34140 5.39775 5.61791 5.77971 6.27070 6.61530 6.64921 6.70051 7.28531 8.86697 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022714 B = 0.007457 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.437764 B = 3753.990137 C = 4351.253483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.271 3.729 3 C -0.254 4.254 4 C 0.107 3.893 5 C -0.252 4.252 6 N 0.067 4.933 7 O -0.172 6.172 8 O -0.227 6.227 9 C 0.530 3.470 10 O -0.544 6.544 11 N -0.456 5.456 12 C 0.116 3.884 13 C -0.045 4.045 14 C -0.490 4.490 15 H 0.007 0.993 16 C 0.046 3.954 17 N -0.934 5.934 18 Si 0.891 3.109 19 H -0.218 1.218 20 H -0.308 1.308 21 H -0.209 1.209 22 C -0.152 4.152 23 C -0.182 4.182 24 H 0.140 0.860 25 H 0.113 0.887 26 H 0.081 0.919 27 H 0.212 0.788 28 H 0.192 0.808 29 H 0.123 0.877 30 H 0.093 0.907 31 H 0.269 0.731 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.875 4.320 11.845 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.154 3.846 3 C -0.276 4.276 4 C 0.083 3.917 5 C -0.343 4.343 6 N 0.572 4.428 7 O -0.387 6.387 8 O -0.427 6.427 9 C 0.330 3.670 10 O -0.425 6.425 11 N -0.160 5.160 12 C -0.005 4.005 13 C -0.046 4.046 14 C -0.527 4.527 15 H 0.025 0.975 16 C -0.154 4.154 17 N -0.571 5.571 18 Si 0.713 3.287 19 H -0.141 1.141 20 H -0.236 1.236 21 H -0.131 1.131 22 C -0.189 4.189 23 C -0.220 4.220 24 H 0.158 0.842 25 H 0.131 0.869 26 H 0.100 0.900 27 H 0.229 0.771 28 H 0.210 0.790 29 H 0.141 0.859 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.240 3.556 11.754 13.775 hybrid contribution 0.361 -0.306 -0.810 0.938 sum -5.879 3.250 10.945 12.842 Atomic orbital electron populations 1.21968 0.85585 1.07085 1.06488 1.21768 0.97459 0.84904 0.80437 1.21011 0.91634 0.99154 1.15758 1.21902 0.95363 0.97030 0.77382 1.21556 0.80103 0.97583 1.35061 1.43020 1.03295 0.99906 0.96580 1.94374 1.68029 1.22002 1.54267 1.94606 1.70758 1.19906 1.57448 1.16117 0.82084 0.89389 0.79439 1.91012 1.67703 1.32099 1.51651 1.45415 1.06305 1.09333 1.54995 1.22035 0.96884 0.83295 0.98261 1.19652 1.03435 0.88687 0.92835 1.19950 0.92078 1.20875 1.19805 0.97490 1.25711 1.00577 0.94183 0.94948 1.70048 1.21360 1.32971 1.32712 0.86959 0.77236 0.83995 0.80534 1.14135 1.23567 1.13078 1.23072 0.94116 0.98774 1.02973 1.22879 0.93818 1.04715 1.00552 0.84226 0.86864 0.90045 0.77092 0.79050 0.85889 0.88853 0.92132 0.89964 0.86925 0.89613 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 8.37 71.24 0.60 -2.92 16 2 C 0.27 7.51 5.95 41.28 0.25 7.75 16 3 C -0.25 -5.71 9.63 22.08 0.21 -5.50 16 4 C 0.11 2.86 9.60 22.32 0.21 3.07 16 5 C -0.25 -9.59 6.88 36.51 0.25 -9.34 16 6 N 0.07 2.83 4.45 -46.16 -0.21 2.63 16 7 O -0.17 -6.62 18.47 18.89 0.35 -6.27 16 8 O -0.23 -11.05 17.44 25.50 0.44 -10.60 16 9 C 0.53 22.24 7.36 84.82 0.62 22.86 16 10 O -0.54 -26.73 14.91 15.31 0.23 -26.50 16 11 N -0.46 -16.04 2.16 -636.39 -1.38 -17.41 16 12 C 0.12 3.89 4.72 86.38 0.41 4.30 16 13 C -0.04 -1.82 1.19 -52.93 -0.06 -1.88 16 14 C -0.49 -24.21 7.67 25.60 0.20 -24.02 16 15 H 0.01 0.42 8.06 -2.91 -0.02 0.40 16 16 C 0.05 2.15 4.59 84.65 0.39 2.54 16 17 N -0.93 -49.26 13.96 21.45 0.30 -48.96 16 18 Si 0.89 31.85 23.73 68.60 1.63 33.48 16 19 H -0.22 -6.07 5.99 99.48 0.60 -5.47 16 20 H -0.31 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.21 -6.69 4.47 99.48 0.45 -6.24 16 22 C -0.15 -5.44 6.75 30.59 0.21 -5.24 16 23 C -0.18 -7.57 9.88 30.59 0.30 -7.27 16 24 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.11 2.39 8.10 -2.38 -0.02 2.37 16 26 H 0.08 2.33 0.46 -2.39 0.00 2.33 16 27 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.19 3.69 7.62 -2.91 -0.02 3.67 16 29 H 0.12 3.21 5.49 -2.39 -0.01 3.19 16 30 H 0.09 3.07 7.38 -2.39 -0.02 3.05 16 31 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 32 H 0.08 3.10 7.02 -2.38 -0.02 3.08 16 33 H 0.11 3.22 8.13 -2.39 -0.02 3.20 16 34 H 0.09 3.46 8.09 -2.39 -0.02 3.44 16 35 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -73.76 288.28 5.71 -68.05 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.76 Total: 21.24 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 3.58 Total: -15.64 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -1.28 Total: -63.75 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: 1.02 Total: -43.38 kcal Atomic # 14 Polarization: 31.85 SS G_CDS: 1.63 Total: 33.48 kcal Total: -73.76 5.71 -68.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596268972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.688 kcal (2) G-P(sol) polarization free energy of solvation -73.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds