Wall clock time and date at job start Mon Mar 30 2020 23:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00306 * 2 1 4 4 H 1.48499 * 109.47375 * 272.47923 * 3 2 1 5 5 H 1.48508 * 109.47116 * 32.47802 * 3 2 1 6 6 H 1.48497 * 109.47312 * 152.47320 * 3 2 1 7 7 C 1.37876 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00168 * 354.72460 * 7 2 1 9 9 C 1.50702 * 119.99863 * 174.71995 * 7 2 1 10 10 C 1.53007 * 115.54710 * 88.61951 * 9 7 2 11 11 S 1.81405 * 109.47190 * 65.24974 * 10 9 7 12 12 C 1.81401 * 103.00042 * 175.10392 * 11 10 9 13 13 C 1.50693 * 109.47009 * 179.97438 * 12 11 10 14 14 C 1.38236 * 119.99663 * 90.00133 * 13 12 11 15 15 C 1.38243 * 120.00036 * 180.02562 * 14 13 12 16 16 C 1.38239 * 119.99591 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99571 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.46948 * 90.00132 * 17 16 15 19 19 C 1.38238 * 119.99962 * 0.25067 * 16 15 14 20 20 C 1.38232 * 120.00336 * 270.01999 * 13 12 11 21 21 C 1.52994 * 117.50299 * 234.28615 * 9 7 2 22 22 C 1.52997 * 117.50112 * 302.95030 * 9 7 2 23 23 H 0.97001 * 119.99845 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47224 * 305.24832 * 10 9 7 25 25 H 1.08992 * 109.47108 * 185.25007 * 10 9 7 26 26 H 1.09006 * 109.47129 * 59.99973 * 12 11 10 27 27 H 1.09004 * 109.46955 * 300.00348 * 12 11 10 28 28 H 1.07997 * 120.00534 * 0.02562 * 14 13 12 29 29 H 1.07996 * 120.00119 * 179.97438 * 15 14 13 30 30 H 1.09001 * 109.47413 * 329.99916 * 17 16 15 31 31 H 1.08998 * 109.46929 * 209.99485 * 17 16 15 32 32 H 0.96708 * 114.00234 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.99667 * 179.73384 * 19 16 15 34 34 H 1.08002 * 119.99986 * 0.02562 * 20 13 12 35 35 H 1.08997 * 117.50298 * 215.00461 * 21 9 7 36 36 H 1.09004 * 117.49769 * 0.02562 * 21 9 7 37 37 H 1.08992 * 117.49943 * 359.97381 * 22 9 7 38 38 H 1.09001 * 117.49677 * 144.97731 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4443 2.0767 -1.3987 5 1 1.4739 2.6370 0.7518 6 1 3.5719 1.4255 0.6470 7 6 2.0045 -1.1941 0.0005 8 1 1.4679 -2.1274 0.0869 9 6 3.5067 -1.1969 -0.1196 10 6 4.2744 -1.1008 1.2005 11 16 3.9642 -2.5892 2.1901 12 6 5.0568 -2.3632 3.6204 13 6 4.9119 -3.5376 4.5536 14 6 5.7237 -4.6460 4.4008 15 6 5.5906 -5.7236 5.2565 16 6 4.6452 -5.6928 6.2646 17 6 4.4997 -6.8677 7.1971 18 8 5.3596 -6.6903 8.3245 19 6 3.8296 -4.5867 6.4138 20 6 3.9671 -3.5066 5.5622 21 6 4.1246 -2.0407 -1.2362 22 6 4.1188 -0.5138 -1.3441 23 1 -0.4850 0.8401 -0.0004 24 1 3.9405 -0.2218 1.7518 25 1 5.3414 -1.0171 0.9949 26 1 4.7843 -1.4472 4.1447 27 1 6.0902 -2.2938 3.2808 28 1 6.4620 -4.6702 3.6129 29 1 6.2245 -6.5897 5.1368 30 1 4.7722 -7.7836 6.6728 31 1 3.4660 -6.9367 7.5359 32 1 5.3181 -7.4110 8.9681 33 1 3.0881 -4.5645 7.1988 34 1 3.3324 -2.6409 5.6811 35 1 5.0779 -2.5274 -1.0305 36 1 3.4445 -2.5936 -1.8843 37 1 3.4351 -0.0627 -2.0631 38 1 5.0683 0.0043 -1.2092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596352393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:38 Heat of formation + Delta-G solvation = -6.384799 kcal Electronic energy + Delta-G solvation = -18293.794185 eV Core-core repulsion = 15420.933187 eV Total energy + Delta-G solvation = -2872.860998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.50734 -36.97263 -36.88780 -33.06930 -32.06737 -30.93516 -28.61779 -27.90928 -25.41477 -24.44113 -22.74144 -21.62873 -20.85825 -19.06223 -17.69609 -16.67661 -16.18315 -15.84473 -15.40566 -15.10272 -14.93685 -14.13854 -13.86845 -13.74691 -13.63419 -13.46671 -13.13064 -12.72276 -12.67524 -12.25415 -12.09770 -11.84600 -11.14005 -11.04794 -10.97965 -10.74810 -10.46436 -10.33128 -10.14665 -9.66648 -9.54023 -9.04152 -8.89143 -8.60953 -8.48079 -8.35776 -6.91576 -6.08734 -4.10680 1.08006 1.44343 2.37068 3.27576 3.29397 3.37182 3.41704 3.74125 4.28062 4.42167 4.69616 4.74837 4.88674 4.97818 4.97915 5.03630 5.17867 5.18585 5.36559 5.48075 5.64164 5.67140 5.68707 5.92789 5.98122 6.06218 6.07026 6.14054 6.37629 6.38130 6.47020 6.53666 6.63292 6.72349 6.97434 7.04086 7.12503 7.32896 7.73182 8.52041 8.97208 9.54156 11.03371 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030119 B = 0.003645 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.423040 B = 7680.603464 C = 8035.093499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.261 1.261 7 C -0.479 4.479 8 H 0.081 0.919 9 C 0.014 3.986 10 C -0.047 4.047 11 S -0.210 6.210 12 C -0.072 4.072 13 C -0.050 4.050 14 C -0.108 4.108 15 C -0.100 4.100 16 C -0.100 4.100 17 C 0.119 3.881 18 O -0.568 6.568 19 C -0.098 4.098 20 C -0.104 4.104 21 C -0.173 4.173 22 C -0.195 4.195 23 H 0.264 0.736 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.378 0.622 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.598 -9.920 12.426 19.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.123 4.123 3 Si 0.705 3.295 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.185 1.185 7 C -0.517 4.517 8 H 0.099 0.901 9 C 0.012 3.988 10 C -0.196 4.196 11 S 0.020 5.980 12 C -0.220 4.220 13 C -0.051 4.051 14 C -0.127 4.127 15 C -0.118 4.118 16 C -0.101 4.101 17 C 0.041 3.959 18 O -0.374 6.374 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.210 4.210 22 C -0.234 4.234 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.225 0.775 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.873 -10.059 11.879 18.987 hybrid contribution 1.038 1.588 0.427 1.944 sum 11.910 -8.471 12.305 19.106 Atomic orbital electron populations 1.69899 1.06308 1.26972 1.50104 1.24949 0.94534 0.98824 0.94027 0.86894 0.80540 0.83707 0.78362 1.20452 1.22015 1.18545 1.20212 0.86234 0.94740 1.50467 0.90115 1.19006 0.95237 1.00362 0.84170 1.23342 1.00016 0.96613 0.99583 1.87362 1.56890 1.32441 1.21282 1.22381 1.02505 0.98906 0.98165 1.19330 0.96053 0.94800 0.94951 1.21006 0.99659 0.92936 0.99134 1.20948 0.97430 0.98452 0.94988 1.19556 0.97849 0.95916 0.96787 1.20976 0.93426 0.95229 0.86242 1.86584 1.66385 1.49817 1.34633 1.20978 0.99009 0.92773 0.98876 1.21071 0.97606 0.98943 0.94796 1.22825 1.01028 0.92429 1.04722 1.23041 1.01132 0.95469 1.03773 0.92608 0.90552 0.92736 0.89704 0.90036 0.85724 0.86088 0.92807 0.92745 0.77544 0.85982 0.85454 0.90740 0.89363 0.89159 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 3 Si 0.88 21.41 24.95 -169.99 -4.24 17.17 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -5.97 5.69 56.52 0.32 -5.65 16 7 C -0.48 -13.31 9.07 -34.44 -0.31 -13.62 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 9 C 0.01 0.33 0.79 -155.66 -0.12 0.21 16 10 C -0.05 -0.97 5.42 37.16 0.20 -0.77 16 11 S -0.21 -4.11 21.41 -107.50 -2.30 -6.41 16 12 C -0.07 -1.08 6.07 36.00 0.22 -0.87 16 13 C -0.05 -0.72 5.14 -104.63 -0.54 -1.25 16 14 C -0.11 -1.41 9.70 -39.58 -0.38 -1.79 16 15 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 16 C -0.10 -1.20 5.51 -104.62 -0.58 -1.78 16 17 C 0.12 1.07 7.17 36.00 0.26 1.33 16 18 O -0.57 -5.32 13.64 -35.23 -0.48 -5.80 16 19 C -0.10 -1.23 9.70 -39.58 -0.38 -1.61 16 20 C -0.10 -1.44 9.70 -39.59 -0.38 -1.82 16 21 C -0.17 -3.54 9.96 -26.70 -0.27 -3.81 16 22 C -0.19 -4.10 7.67 -26.69 -0.20 -4.30 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.08 1.65 6.54 -51.92 -0.34 1.31 16 25 H 0.05 0.99 8.09 -51.93 -0.42 0.57 16 26 H 0.08 1.22 8.09 -51.92 -0.42 0.80 16 27 H 0.08 1.09 8.09 -51.92 -0.42 0.67 16 28 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.38 1.56 9.12 45.56 0.42 1.98 16 33 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 37 H 0.09 2.00 7.33 -51.93 -0.38 1.62 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 331.39 15.07 4.99 4.99 Total: -1.00 -32.14 331.39 -9.23 -41.38 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.00 Total: 4.62 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: -2.98 Total: -29.53 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.77 Total: -26.42 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.48 Total: -5.80 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.24 Total: 17.17 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -2.30 Total: -6.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.14 -9.23 -41.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596352393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.991 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds