Wall clock time and date at job start Mon Mar 30 2020 23:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00306 * 2 1 4 4 H 1.48499 * 109.47375 * 272.47923 * 3 2 1 5 5 H 1.48508 * 109.47116 * 32.47802 * 3 2 1 6 6 H 1.48497 * 109.47312 * 152.47320 * 3 2 1 7 7 C 1.37876 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00168 * 354.72460 * 7 2 1 9 9 C 1.50702 * 119.99863 * 174.71995 * 7 2 1 10 10 C 1.53007 * 115.54710 * 88.61951 * 9 7 2 11 11 S 1.81405 * 109.47190 * 65.24974 * 10 9 7 12 12 C 1.81401 * 103.00042 * 175.10392 * 11 10 9 13 13 C 1.50693 * 109.47009 * 179.97438 * 12 11 10 14 14 C 1.38236 * 119.99663 * 90.00133 * 13 12 11 15 15 C 1.38243 * 120.00036 * 180.02562 * 14 13 12 16 16 C 1.38239 * 119.99591 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99571 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.46948 * 90.00132 * 17 16 15 19 19 C 1.38238 * 119.99962 * 0.25067 * 16 15 14 20 20 C 1.38232 * 120.00336 * 270.01999 * 13 12 11 21 21 C 1.52994 * 117.50299 * 234.28615 * 9 7 2 22 22 C 1.52997 * 117.50112 * 302.95030 * 9 7 2 23 23 H 0.97001 * 119.99845 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47224 * 305.24832 * 10 9 7 25 25 H 1.08992 * 109.47108 * 185.25007 * 10 9 7 26 26 H 1.09006 * 109.47129 * 59.99973 * 12 11 10 27 27 H 1.09004 * 109.46955 * 300.00348 * 12 11 10 28 28 H 1.07997 * 120.00534 * 0.02562 * 14 13 12 29 29 H 1.07996 * 120.00119 * 179.97438 * 15 14 13 30 30 H 1.09001 * 109.47413 * 329.99916 * 17 16 15 31 31 H 1.08998 * 109.46929 * 209.99485 * 17 16 15 32 32 H 0.96708 * 114.00234 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.99667 * 179.73384 * 19 16 15 34 34 H 1.08002 * 119.99986 * 0.02562 * 20 13 12 35 35 H 1.08997 * 117.50298 * 215.00461 * 21 9 7 36 36 H 1.09004 * 117.49769 * 0.02562 * 21 9 7 37 37 H 1.08992 * 117.49943 * 359.97381 * 22 9 7 38 38 H 1.09001 * 117.49677 * 144.97731 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4443 2.0767 -1.3987 5 1 1.4739 2.6370 0.7518 6 1 3.5719 1.4255 0.6470 7 6 2.0045 -1.1941 0.0005 8 1 1.4679 -2.1274 0.0869 9 6 3.5067 -1.1969 -0.1196 10 6 4.2744 -1.1008 1.2005 11 16 3.9642 -2.5892 2.1901 12 6 5.0568 -2.3632 3.6204 13 6 4.9119 -3.5376 4.5536 14 6 5.7237 -4.6460 4.4008 15 6 5.5906 -5.7236 5.2565 16 6 4.6452 -5.6928 6.2646 17 6 4.4997 -6.8677 7.1971 18 8 5.3596 -6.6903 8.3245 19 6 3.8296 -4.5867 6.4138 20 6 3.9671 -3.5066 5.5622 21 6 4.1246 -2.0407 -1.2362 22 6 4.1188 -0.5138 -1.3441 23 1 -0.4850 0.8401 -0.0004 24 1 3.9405 -0.2218 1.7518 25 1 5.3414 -1.0171 0.9949 26 1 4.7843 -1.4472 4.1447 27 1 6.0902 -2.2938 3.2808 28 1 6.4620 -4.6702 3.6129 29 1 6.2245 -6.5897 5.1368 30 1 4.7722 -7.7836 6.6728 31 1 3.4660 -6.9367 7.5359 32 1 5.3181 -7.4110 8.9681 33 1 3.0881 -4.5645 7.1988 34 1 3.3324 -2.6409 5.6811 35 1 5.0779 -2.5274 -1.0305 36 1 3.4445 -2.5936 -1.8843 37 1 3.4351 -0.0627 -2.0631 38 1 5.0683 0.0043 -1.2092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596352393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:38 Heat of formation + Delta-G solvation = -26.665181 kcal Electronic energy + Delta-G solvation = -18294.673609 eV Core-core repulsion = 15420.933187 eV Total energy + Delta-G solvation = -2873.740422 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43363 -38.70852 -37.60863 -34.22313 -34.02999 -31.88833 -29.86968 -29.25641 -27.45982 -25.38111 -23.69795 -23.29015 -21.83691 -20.91216 -18.47541 -18.33727 -17.40144 -16.90779 -16.75761 -16.67630 -16.11465 -15.51678 -15.19140 -15.01171 -14.80610 -14.64358 -14.49962 -14.34060 -14.02720 -13.51232 -13.27657 -13.01855 -12.92002 -12.61749 -12.16529 -12.01334 -11.97237 -11.84573 -11.61351 -11.05216 -10.95710 -10.84297 -10.66699 -10.11546 -9.85930 -9.54246 -8.44088 -8.26783 -6.33385 0.01895 0.47506 1.07382 1.35566 1.37492 1.49304 1.90620 2.37906 2.80287 3.06836 3.27339 3.55117 3.76511 3.79166 4.01664 4.07232 4.09592 4.18991 4.27642 4.40392 4.45503 4.47162 4.48877 4.57673 4.59158 4.72856 4.76873 4.85575 5.02321 5.07613 5.12932 5.33338 5.41414 5.47836 5.60893 5.62714 5.70879 6.02884 6.32673 6.73944 6.93091 7.34960 8.89372 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030119 B = 0.003645 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.423040 B = 7680.603464 C = 8035.093499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.019 3.981 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.299 1.299 6 H -0.231 1.231 7 C -0.476 4.476 8 H 0.026 0.974 9 C -0.014 4.014 10 C -0.036 4.036 11 S -0.271 6.271 12 C -0.049 4.049 13 C -0.072 4.072 14 C -0.113 4.113 15 C -0.106 4.106 16 C -0.106 4.106 17 C 0.119 3.881 18 O -0.589 6.589 19 C -0.109 4.109 20 C -0.120 4.120 21 C -0.159 4.159 22 C -0.183 4.183 23 H 0.264 0.736 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.400 0.600 33 H 0.137 0.863 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.759 -10.073 13.252 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.178 4.178 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.226 1.226 6 H -0.153 1.153 7 C -0.514 4.514 8 H 0.044 0.956 9 C -0.016 4.016 10 C -0.184 4.184 11 S -0.040 6.040 12 C -0.196 4.196 13 C -0.074 4.074 14 C -0.132 4.132 15 C -0.124 4.124 16 C -0.107 4.107 17 C 0.042 3.958 18 O -0.398 6.398 19 C -0.127 4.127 20 C -0.140 4.140 21 C -0.197 4.197 22 C -0.223 4.223 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.156 0.844 29 H 0.162 0.838 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.250 0.750 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.058 -10.238 12.703 21.536 hybrid contribution 0.015 1.429 0.264 1.453 sum 14.073 -8.809 12.967 21.066 Atomic orbital electron populations 1.70064 1.08453 1.27939 1.52614 1.25835 0.95207 1.02894 0.93821 0.85887 0.80336 0.78430 0.79008 1.19314 1.22611 1.15332 1.20307 0.89236 0.92549 1.49304 0.95615 1.18898 0.92665 1.03600 0.86392 1.23122 1.01319 0.96145 0.97857 1.87561 1.59615 1.32562 1.24281 1.22338 1.02053 0.99480 0.95769 1.19390 0.97247 0.95344 0.95393 1.21236 0.99639 0.92768 0.99598 1.21286 0.97639 0.98897 0.94583 1.20016 0.97029 0.96532 0.97129 1.21006 0.94259 0.94472 0.86055 1.86513 1.66501 1.51523 1.35274 1.21239 0.99645 0.92737 0.99090 1.21218 0.97805 0.99553 0.95448 1.22839 1.01667 0.92573 1.02601 1.23098 1.01940 0.95826 1.01399 0.92673 0.91781 0.89386 0.89362 0.87921 0.84444 0.83788 0.90953 0.91436 0.74980 0.84496 0.85777 0.87651 0.90840 0.90655 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 2 C 0.02 1.13 5.47 84.65 0.46 1.59 16 3 Si 0.94 43.92 24.95 68.60 1.71 45.63 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.23 -9.57 5.69 99.48 0.57 -9.01 16 7 C -0.48 -27.32 9.07 25.60 0.23 -27.08 16 8 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 9 C -0.01 -0.62 0.79 -52.93 -0.04 -0.66 16 10 C -0.04 -1.42 5.42 71.98 0.39 -1.03 16 11 S -0.27 -10.45 21.41 -56.49 -1.21 -11.66 16 12 C -0.05 -1.40 6.07 71.23 0.43 -0.97 16 13 C -0.07 -2.00 5.14 -19.87 -0.10 -2.10 16 14 C -0.11 -2.75 9.70 22.27 0.22 -2.53 16 15 C -0.11 -2.33 9.70 22.27 0.22 -2.11 16 16 C -0.11 -2.34 5.51 -19.87 -0.11 -2.45 16 17 C 0.12 1.85 7.17 71.23 0.51 2.36 16 18 O -0.59 -9.53 13.64 -148.98 -2.03 -11.56 16 19 C -0.11 -2.62 9.70 22.27 0.22 -2.41 16 20 C -0.12 -3.28 9.70 22.27 0.22 -3.07 16 21 C -0.16 -6.25 9.96 30.62 0.30 -5.94 16 22 C -0.18 -7.18 7.67 30.62 0.23 -6.94 16 23 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 24 H 0.06 2.63 6.54 -2.39 -0.02 2.61 16 25 H 0.09 2.84 8.09 -2.39 -0.02 2.82 16 26 H 0.09 2.43 8.09 -2.39 -0.02 2.41 16 27 H 0.10 2.47 8.09 -2.39 -0.02 2.45 16 28 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 29 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 31 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 32 H 0.40 2.25 9.12 -74.05 -0.68 1.57 16 33 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 34 H 0.12 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 37 H 0.07 3.18 7.33 -2.39 -0.02 3.16 16 38 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -72.33 331.39 2.18 -70.15 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.23 Total: 20.76 kcal Atomic # 6 Polarization: -56.53 SS G_CDS: 3.18 Total: -53.35 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.30 Total: -59.97 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -2.03 Total: -11.56 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.71 Total: 45.63 kcal Atomic # 16 Polarization: -10.45 SS G_CDS: -1.21 Total: -11.66 kcal Total: -72.33 2.18 -70.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596352393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.484 kcal (2) G-P(sol) polarization free energy of solvation -72.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds