Wall clock time and date at job start Tue Mar 31 2020 01:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 112.99982 * 2 1 4 4 S 1.81400 * 109.46996 * 50.33875 * 3 2 1 5 5 C 1.81402 * 102.99892 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47015 * 179.97438 * 5 4 3 7 7 C 1.38629 * 119.75032 * 90.00088 * 6 5 4 8 8 C 1.37624 * 120.24653 * 180.23096 * 7 6 5 9 9 C 1.40716 * 119.74224 * 359.52057 * 8 7 6 10 10 C 1.41396 * 120.23809 * 180.23246 * 9 8 7 11 11 H 1.08004 * 119.99614 * 155.44655 * 10 9 8 12 12 C 1.39940 * 120.00247 * 335.43838 * 10 9 8 13 13 N 1.30823 * 120.00151 * 342.11422 * 12 10 9 14 14 Si 1.86806 * 119.99767 * 162.10433 * 12 10 9 15 15 H 1.48496 * 109.46866 * 94.67188 * 14 12 10 16 16 H 1.48498 * 109.46883 * 214.66477 * 14 12 10 17 17 H 1.48493 * 109.47470 * 334.66957 * 14 12 10 18 18 C 1.40712 * 119.51327 * 0.46996 * 9 8 7 19 19 C 1.37612 * 119.74657 * 359.76314 * 18 9 8 20 20 C 1.54038 * 113.81900 * 131.82951 * 2 1 3 21 21 O 1.44444 * 85.42827 * 91.80524 * 20 2 1 22 22 C 1.44184 * 93.37933 * 24.08781 * 21 20 2 23 23 H 1.08994 * 109.47366 * 69.66031 * 1 2 3 24 24 H 1.08996 * 109.47072 * 189.67070 * 1 2 3 25 25 H 1.09005 * 109.46952 * 309.66302 * 1 2 3 26 26 H 1.09003 * 109.47326 * 290.33339 * 3 2 1 27 27 H 1.09002 * 109.47150 * 170.33724 * 3 2 1 28 28 H 1.09002 * 109.47253 * 59.99357 * 5 4 3 29 29 H 1.09002 * 109.46892 * 299.99892 * 5 4 3 30 30 H 1.07999 * 119.87639 * 359.94983 * 7 6 5 31 31 H 1.07997 * 120.12681 * 179.71511 * 8 7 6 32 32 H 0.97002 * 120.00064 * 180.02562 * 13 12 10 33 33 H 1.08001 * 120.12762 * 179.73183 * 18 9 8 34 34 H 1.08003 * 119.88187 * 179.97438 * 19 18 9 35 35 H 1.08995 * 113.86559 * 205.91350 * 20 2 1 36 36 H 1.09005 * 113.85968 * 337.61524 * 20 2 1 37 37 H 1.08991 * 113.87007 * 221.76732 * 22 21 20 38 38 H 1.08999 * 113.97993 * 90.06868 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4084 0.0000 4 16 1.3592 2.3915 1.3166 5 6 2.1831 3.9999 1.1587 6 6 1.6440 4.9449 2.2015 7 6 2.2508 5.0149 3.4460 8 6 1.7641 5.8708 4.4075 9 6 0.6523 6.6840 4.1199 10 6 0.1466 7.5707 5.0983 11 1 -0.4097 8.4463 4.7976 12 6 0.3666 7.3138 6.4562 13 7 0.7171 6.1154 6.8467 14 14 0.1601 8.6821 7.7111 15 1 -1.2106 8.6292 8.2800 16 1 1.1549 8.5092 8.8000 17 1 0.3718 9.9953 7.0510 18 6 0.0445 6.6047 2.8533 19 6 0.5452 5.7381 1.9088 20 6 2.1521 -0.9398 1.0500 21 8 2.1471 -1.9297 -0.0019 22 6 2.1519 -0.9398 -1.0502 23 1 -0.3634 0.3572 -0.9635 24 1 -0.3633 -1.0130 0.1726 25 1 -0.3633 0.6560 0.7912 26 1 1.9411 1.8824 -0.9636 27 1 3.2023 1.3470 0.1725 28 1 1.9946 4.4088 0.1660 29 1 3.2563 3.8740 1.3020 30 1 3.1060 4.3920 3.6633 31 1 2.2355 5.9204 5.3778 32 1 0.8692 5.9372 7.7880 33 1 -0.8120 7.2211 2.6234 34 1 0.0801 5.6751 0.9361 35 1 3.1503 -0.6428 1.3713 36 1 1.4869 -1.1742 1.8812 37 1 1.4868 -1.1741 -1.8812 38 1 3.1493 -0.6414 -1.3731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596414830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:18 Heat of formation + Delta-G solvation = -11.572446 kcal Electronic energy + Delta-G solvation = -18363.033855 eV Core-core repulsion = 15489.947903 eV Total energy + Delta-G solvation = -2873.085952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71716 -37.65800 -34.04160 -33.32413 -31.26707 -29.35574 -27.98956 -27.30287 -26.73205 -25.62106 -23.90080 -21.06223 -20.12964 -18.98844 -17.36833 -16.44083 -16.20514 -16.02819 -15.40441 -15.22938 -14.36594 -14.20651 -13.97735 -13.82887 -13.63268 -13.10060 -12.65202 -12.42777 -12.18479 -12.04587 -11.98360 -11.75838 -11.57761 -11.11883 -11.07440 -10.89552 -10.73583 -10.50154 -10.38311 -9.81450 -9.71500 -9.49463 -9.44744 -9.15610 -7.53598 -7.34176 -7.22114 -6.84283 -4.41677 1.82857 2.72601 2.98648 3.02247 3.03959 3.08655 3.36584 3.54752 3.87150 4.04994 4.53220 4.58403 4.85849 4.95133 5.14326 5.25801 5.42831 5.48089 5.55326 5.60411 5.69888 5.75264 5.76606 5.81432 5.96590 6.00084 6.12298 6.23604 6.29090 6.33310 6.89183 6.99379 7.20115 7.28429 7.54066 7.77054 7.97767 8.02931 8.21600 8.56017 8.80863 8.89158 10.09401 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037405 B = 0.003207 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.378269 B = 8727.856382 C = 9018.668717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 C -0.094 4.094 4 S -0.263 6.263 5 C -0.006 4.006 6 C -0.211 4.211 7 C -0.079 4.079 8 C -0.168 4.168 9 C 0.117 3.883 10 C -0.456 4.456 11 H 0.079 0.921 12 C 0.075 3.925 13 N -0.785 5.785 14 Si 0.908 3.092 15 H -0.270 1.270 16 H -0.275 1.275 17 H -0.260 1.260 18 C -0.228 4.228 19 C -0.067 4.067 20 C 0.047 3.953 21 O -0.382 6.382 22 C 0.044 3.956 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.282 0.718 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.011 -8.294 -9.912 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 C -0.242 4.242 4 S -0.032 6.032 5 C -0.152 4.152 6 C -0.215 4.215 7 C -0.099 4.099 8 C -0.187 4.187 9 C 0.113 3.887 10 C -0.486 4.486 11 H 0.097 0.903 12 C -0.144 4.144 13 N -0.410 5.410 14 Si 0.732 3.268 15 H -0.195 1.195 16 H -0.199 1.199 17 H -0.183 1.183 18 C -0.248 4.248 19 C -0.087 4.087 20 C -0.030 4.030 21 O -0.301 6.301 22 C -0.034 4.034 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.297 -9.094 -9.019 13.012 hybrid contribution 0.878 1.100 -0.233 1.427 sum 3.174 -7.994 -9.252 12.633 Atomic orbital electron populations 1.21640 0.91349 1.02568 1.03346 1.23425 0.98149 0.93064 0.96213 1.23442 1.02113 0.97287 1.01378 1.87424 1.57958 1.12535 1.45251 1.22025 0.99938 0.92540 1.00740 1.18388 1.03456 1.04190 0.95469 1.20510 0.98378 0.98121 0.92873 1.21283 0.98097 1.00477 0.98864 1.17663 0.89463 0.90230 0.91305 1.19662 1.30359 1.08213 0.90332 0.90254 1.25956 0.92598 0.95882 0.99929 1.69832 1.32850 1.20115 1.18181 0.86298 0.78917 0.81913 0.79646 1.19476 1.19944 1.18349 1.20952 1.02641 1.04990 0.96179 1.20359 0.95001 0.96058 0.97295 1.24164 1.00707 0.85900 0.92225 1.89694 1.95771 1.27603 1.17038 1.24101 1.00298 0.86637 0.92387 0.91930 0.91954 0.90044 0.90334 0.90509 0.91394 0.91390 0.89374 0.86364 0.90679 0.88842 0.89350 0.89900 0.88691 0.89116 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.93 37.16 0.33 -1.15 16 2 C -0.11 -1.19 1.06 -153.42 -0.16 -1.35 16 3 C -0.09 -1.12 5.46 37.16 0.20 -0.92 16 4 S -0.26 -4.29 19.92 -107.50 -2.14 -6.43 16 5 C -0.01 -0.10 6.06 36.01 0.22 0.11 16 6 C -0.21 -4.51 5.16 -104.33 -0.54 -5.05 16 7 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 8 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 9 C 0.12 3.06 5.57 -106.83 -0.60 2.46 16 10 C -0.46 -11.86 9.05 -37.74 -0.34 -12.20 16 11 H 0.08 1.97 7.91 -52.48 -0.42 1.56 16 12 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 13 N -0.79 -19.97 10.97 55.55 0.61 -19.36 16 14 Si 0.91 18.20 29.60 -169.99 -5.03 13.16 16 15 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 16 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 17 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 18 C -0.23 -5.51 9.80 -38.88 -0.38 -5.89 16 19 C -0.07 -1.48 9.67 -39.66 -0.38 -1.86 16 20 C 0.05 0.54 8.34 37.64 0.31 0.85 16 21 O -0.38 -4.77 12.39 -35.23 -0.44 -5.21 16 22 C 0.04 0.43 8.37 37.64 0.32 0.75 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 25 H 0.08 1.07 6.52 -51.93 -0.34 0.73 16 26 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 27 H 0.08 0.86 7.98 -51.92 -0.41 0.44 16 28 H 0.07 1.07 8.08 -51.92 -0.42 0.65 16 29 H 0.07 1.09 8.08 -51.92 -0.42 0.67 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.12 3.12 6.17 -52.49 -0.32 2.79 16 32 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 33 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 34 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 35 H 0.08 0.89 7.99 -51.93 -0.41 0.48 16 36 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -27.22 328.99 -9.55 -36.76 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.67 Total: 5.42 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: -1.83 Total: -29.31 kcal Atomic # 7 Polarization: -19.97 SS G_CDS: 0.61 Total: -19.36 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.44 Total: -5.21 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.16 kcal Atomic # 16 Polarization: -4.29 SS G_CDS: -2.14 Total: -6.43 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.22 -9.55 -36.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596414830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.191 kcal (2) G-P(sol) polarization free energy of solvation -27.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds