Wall clock time and date at job start Tue Mar 31 2020 01:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 112.99982 * 2 1 4 4 S 1.81400 * 109.46996 * 50.33875 * 3 2 1 5 5 C 1.81402 * 102.99892 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47015 * 179.97438 * 5 4 3 7 7 C 1.38629 * 119.75032 * 90.00088 * 6 5 4 8 8 C 1.37624 * 120.24653 * 180.23096 * 7 6 5 9 9 C 1.40716 * 119.74224 * 359.52057 * 8 7 6 10 10 C 1.41396 * 120.23809 * 180.23246 * 9 8 7 11 11 H 1.08004 * 119.99614 * 155.44655 * 10 9 8 12 12 C 1.39940 * 120.00247 * 335.43838 * 10 9 8 13 13 N 1.30823 * 120.00151 * 342.11422 * 12 10 9 14 14 Si 1.86806 * 119.99767 * 162.10433 * 12 10 9 15 15 H 1.48496 * 109.46866 * 94.67188 * 14 12 10 16 16 H 1.48498 * 109.46883 * 214.66477 * 14 12 10 17 17 H 1.48493 * 109.47470 * 334.66957 * 14 12 10 18 18 C 1.40712 * 119.51327 * 0.46996 * 9 8 7 19 19 C 1.37612 * 119.74657 * 359.76314 * 18 9 8 20 20 C 1.54038 * 113.81900 * 131.82951 * 2 1 3 21 21 O 1.44444 * 85.42827 * 91.80524 * 20 2 1 22 22 C 1.44184 * 93.37933 * 24.08781 * 21 20 2 23 23 H 1.08994 * 109.47366 * 69.66031 * 1 2 3 24 24 H 1.08996 * 109.47072 * 189.67070 * 1 2 3 25 25 H 1.09005 * 109.46952 * 309.66302 * 1 2 3 26 26 H 1.09003 * 109.47326 * 290.33339 * 3 2 1 27 27 H 1.09002 * 109.47150 * 170.33724 * 3 2 1 28 28 H 1.09002 * 109.47253 * 59.99357 * 5 4 3 29 29 H 1.09002 * 109.46892 * 299.99892 * 5 4 3 30 30 H 1.07999 * 119.87639 * 359.94983 * 7 6 5 31 31 H 1.07997 * 120.12681 * 179.71511 * 8 7 6 32 32 H 0.97002 * 120.00064 * 180.02562 * 13 12 10 33 33 H 1.08001 * 120.12762 * 179.73183 * 18 9 8 34 34 H 1.08003 * 119.88187 * 179.97438 * 19 18 9 35 35 H 1.08995 * 113.86559 * 205.91350 * 20 2 1 36 36 H 1.09005 * 113.85968 * 337.61524 * 20 2 1 37 37 H 1.08991 * 113.87007 * 221.76732 * 22 21 20 38 38 H 1.08999 * 113.97993 * 90.06868 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4084 0.0000 4 16 1.3592 2.3915 1.3166 5 6 2.1831 3.9999 1.1587 6 6 1.6440 4.9449 2.2015 7 6 2.2508 5.0149 3.4460 8 6 1.7641 5.8708 4.4075 9 6 0.6523 6.6840 4.1199 10 6 0.1466 7.5707 5.0983 11 1 -0.4097 8.4463 4.7976 12 6 0.3666 7.3138 6.4562 13 7 0.7171 6.1154 6.8467 14 14 0.1601 8.6821 7.7111 15 1 -1.2106 8.6292 8.2800 16 1 1.1549 8.5092 8.8000 17 1 0.3718 9.9953 7.0510 18 6 0.0445 6.6047 2.8533 19 6 0.5452 5.7381 1.9088 20 6 2.1521 -0.9398 1.0500 21 8 2.1471 -1.9297 -0.0019 22 6 2.1519 -0.9398 -1.0502 23 1 -0.3634 0.3572 -0.9635 24 1 -0.3633 -1.0130 0.1726 25 1 -0.3633 0.6560 0.7912 26 1 1.9411 1.8824 -0.9636 27 1 3.2023 1.3470 0.1725 28 1 1.9946 4.4088 0.1660 29 1 3.2563 3.8740 1.3020 30 1 3.1060 4.3920 3.6633 31 1 2.2355 5.9204 5.3778 32 1 0.8692 5.9372 7.7880 33 1 -0.8120 7.2211 2.6234 34 1 0.0801 5.6751 0.9361 35 1 3.1503 -0.6428 1.3713 36 1 1.4869 -1.1742 1.8812 37 1 1.4868 -1.1741 -1.8812 38 1 3.1493 -0.6414 -1.3731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596414830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:17 Heat of formation + Delta-G solvation = -24.559677 kcal Electronic energy + Delta-G solvation = -18363.597023 eV Core-core repulsion = 15489.947903 eV Total energy + Delta-G solvation = -2873.649120 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.57548 -39.47183 -35.84574 -34.23668 -33.00224 -31.19889 -29.43301 -28.51286 -27.53413 -26.55191 -25.60513 -22.91240 -21.89736 -19.85797 -19.24025 -17.56668 -17.17706 -17.05716 -16.90863 -16.32143 -16.00327 -15.70693 -15.62614 -14.97389 -14.81646 -14.35189 -14.12758 -13.84066 -13.58214 -13.49399 -13.23143 -12.93076 -12.89896 -12.72724 -12.59884 -12.33727 -12.17948 -11.69311 -11.60801 -11.35789 -11.29552 -10.99385 -10.70736 -10.58528 -9.38151 -9.17459 -8.66031 -8.50389 -6.34314 0.46234 1.12512 1.19996 1.38229 1.51069 1.56392 1.90361 2.20036 2.71955 2.75578 3.20094 3.66682 3.74685 3.95898 4.14818 4.16657 4.19272 4.38316 4.44323 4.52338 4.56607 4.59715 4.63926 4.71265 4.85828 4.89397 4.95654 5.03613 5.12851 5.13904 5.17794 5.33289 5.34280 5.43416 5.68583 5.93224 6.08350 6.18586 6.36214 6.67840 6.91765 7.00977 8.30598 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037405 B = 0.003207 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.378269 B = 8727.856382 C = 9018.668717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.108 4.108 3 C -0.074 4.074 4 S -0.301 6.301 5 C -0.003 4.003 6 C -0.199 4.199 7 C -0.086 4.086 8 C -0.191 4.191 9 C 0.084 3.916 10 C -0.498 4.498 11 H 0.077 0.923 12 C 0.035 3.965 13 N -0.822 5.822 14 Si 0.982 3.018 15 H -0.263 1.263 16 H -0.265 1.265 17 H -0.258 1.258 18 C -0.244 4.244 19 C -0.071 4.071 20 C 0.041 3.959 21 O -0.404 6.404 22 C 0.052 3.948 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.289 0.711 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 -9.137 -11.824 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.109 4.109 3 C -0.222 4.222 4 S -0.071 6.071 5 C -0.150 4.150 6 C -0.202 4.202 7 C -0.106 4.106 8 C -0.211 4.211 9 C 0.081 3.919 10 C -0.527 4.527 11 H 0.095 0.905 12 C -0.181 4.181 13 N -0.448 5.448 14 Si 0.803 3.197 15 H -0.187 1.187 16 H -0.190 1.190 17 H -0.182 1.182 18 C -0.264 4.264 19 C -0.091 4.091 20 C -0.035 4.035 21 O -0.323 6.323 22 C -0.026 4.026 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.016 -9.919 -10.935 15.068 hybrid contribution 0.697 1.142 0.135 1.344 sum 3.713 -8.777 -10.800 14.403 Atomic orbital electron populations 1.21598 0.91726 1.02167 1.03204 1.23435 0.97899 0.92605 0.96975 1.23485 1.02383 0.96512 0.99841 1.87582 1.58606 1.12716 1.48165 1.21946 1.00625 0.92246 1.00167 1.18792 1.02065 1.03757 0.95553 1.20749 0.98954 0.97675 0.93208 1.21252 0.98767 1.02061 0.99022 1.17994 0.90273 0.91186 0.92470 1.19890 1.32319 1.08876 0.91626 0.90514 1.26791 0.91771 0.98105 1.01388 1.69886 1.34016 1.21883 1.18972 0.85191 0.79170 0.78460 0.76895 1.18733 1.18970 1.18152 1.21164 1.03088 1.05876 0.96282 1.20674 0.95171 0.95253 0.98014 1.24234 1.01080 0.86007 0.92188 1.89683 1.95924 1.28714 1.18022 1.24283 1.01583 0.84863 0.91896 0.90624 0.91832 0.92240 0.88553 0.89054 0.89286 0.89872 0.87732 0.88172 0.90050 0.88408 0.86553 0.89146 0.89426 0.87469 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.93 71.98 0.64 -2.00 16 2 C -0.11 -2.07 1.06 -51.48 -0.05 -2.12 16 3 C -0.07 -1.49 5.46 71.98 0.39 -1.09 16 4 S -0.30 -9.12 19.92 -56.49 -1.13 -10.24 16 5 C 0.00 -0.10 6.06 71.24 0.43 0.33 16 6 C -0.20 -8.24 5.16 -19.67 -0.10 -8.35 16 7 C -0.09 -3.97 9.67 22.22 0.21 -3.75 16 8 C -0.19 -10.15 8.70 22.73 0.20 -9.95 16 9 C 0.08 4.56 5.57 -21.29 -0.12 4.45 16 10 C -0.50 -27.05 9.05 23.46 0.21 -26.84 16 11 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 12 C 0.03 1.76 5.14 85.26 0.44 2.20 16 13 N -0.82 -43.42 10.97 21.82 0.24 -43.18 16 14 Si 0.98 38.17 29.60 68.60 2.03 40.20 16 15 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 16 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 17 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 18 C -0.24 -12.07 9.80 22.73 0.22 -11.85 16 19 C -0.07 -3.09 9.67 22.22 0.21 -2.87 16 20 C 0.04 0.87 8.34 72.30 0.60 1.47 16 21 O -0.40 -9.11 12.39 -148.98 -1.85 -10.95 16 22 C 0.05 0.82 8.37 72.30 0.61 1.42 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.06 1.26 8.06 -2.39 -0.02 1.24 16 25 H 0.06 1.49 6.52 -2.38 -0.02 1.47 16 26 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.63 7.98 -2.39 -0.02 1.61 16 28 H 0.09 2.46 8.08 -2.39 -0.02 2.44 16 29 H 0.08 2.38 8.08 -2.39 -0.02 2.37 16 30 H 0.10 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.10 5.57 6.17 -2.91 -0.02 5.55 16 32 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 33 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 34 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.09 1.74 7.99 -2.39 -0.02 1.72 16 36 H 0.09 1.93 8.10 -2.38 -0.02 1.91 16 37 H 0.11 1.35 8.10 -2.39 -0.02 1.33 16 38 H 0.10 1.20 8.10 -2.39 -0.02 1.18 16 Total: -1.00 -60.75 328.99 4.23 -56.51 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 1.03 Total: 26.61 kcal Atomic # 6 Polarization: -62.84 SS G_CDS: 3.90 Total: -58.94 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.24 Total: -43.18 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.85 Total: -10.95 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.13 Total: -10.24 kcal Total: -60.75 4.23 -56.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596414830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.954 kcal (2) G-P(sol) polarization free energy of solvation -60.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds