Wall clock time and date at job start Tue Mar 31 2020 00:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48500 * 109.46798 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47215 * 299.99881 * 3 2 1 6 6 H 1.48494 * 109.47431 * 60.00247 * 3 2 1 7 7 C 1.37877 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99464 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00480 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47443 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99899 * 90.00099 * 10 9 7 12 12 C 1.50703 * 109.47064 * 270.00279 * 11 10 9 13 13 C 1.34515 * 125.79060 * 89.99944 * 12 11 10 14 14 C 1.41380 * 106.83832 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84493 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.78568 * 269.69282 * 12 11 10 17 17 C 1.34773 * 120.00646 * 270.00265 * 10 9 7 18 18 O 1.21287 * 119.99667 * 359.97438 * 17 10 9 19 19 C 1.50702 * 120.00755 * 179.97438 * 17 10 9 20 20 H 1.09000 * 112.41457 * 310.33289 * 19 17 10 21 21 C 1.52880 * 113.05238 * 79.81091 * 19 17 10 22 22 C 1.50379 * 82.51348 * 115.45258 * 21 19 17 23 23 O 1.21281 * 131.83781 * 179.97438 * 22 21 19 24 24 N 1.34604 * 96.31601 * 359.97196 * 22 21 19 25 25 H 0.97003 * 119.99687 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46922 * 60.00021 * 9 7 2 27 27 H 1.08996 * 109.47481 * 300.00312 * 9 7 2 28 28 H 1.09002 * 109.47068 * 30.00248 * 11 10 9 29 29 H 1.09001 * 109.47372 * 150.00336 * 11 10 9 30 30 H 1.07996 * 126.58016 * 0.03378 * 13 12 11 31 31 H 1.08004 * 126.57406 * 180.02562 * 14 13 12 32 32 H 1.08005 * 125.79499 * 180.02562 * 15 14 13 33 33 H 1.08989 * 114.37987 * 228.85759 * 21 19 17 34 34 H 1.09000 * 114.37614 * 2.06677 * 21 19 17 35 35 H 0.97005 * 134.66758 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6798 -4.1700 1.2664 12 6 3.9233 -3.4379 1.7009 13 6 3.9588 -2.3377 2.4740 14 6 5.3204 -1.9905 2.6300 15 6 6.0356 -2.8996 1.9435 16 8 5.1844 -3.7766 1.3865 17 6 2.6400 -4.1244 -1.1694 18 8 2.2448 -3.6633 -2.2193 19 6 3.6197 -5.2696 -1.1707 20 1 4.4741 -5.0863 -0.5193 21 6 2.9570 -6.6246 -0.9217 22 6 3.4306 -6.8928 -2.3236 23 8 3.3281 -7.8661 -3.0398 24 7 4.0062 -5.6916 -2.5177 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 1.9070 -4.0565 2.0267 29 1 2.9081 -5.2278 1.1354 30 1 3.1101 -1.8196 2.8955 31 1 5.7113 -1.1560 3.1933 32 1 7.1120 -2.9227 1.8578 33 1 3.4451 -7.2306 -0.1586 34 1 1.8732 -6.5823 -0.8140 35 1 4.4835 -5.2748 -3.2522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597025103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:04 Heat of formation + Delta-G solvation = -39.709036 kcal Electronic energy + Delta-G solvation = -22017.711404 eV Core-core repulsion = 18597.112144 eV Total energy + Delta-G solvation = -3420.599260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.32719 -42.38580 -40.05139 -37.49945 -36.89232 -34.78662 -33.72733 -31.46678 -30.54561 -29.27185 -27.08963 -26.41450 -24.29054 -22.51048 -21.63706 -21.02306 -20.34615 -18.85519 -18.64913 -18.29205 -18.08749 -17.51242 -16.86857 -16.73289 -16.32124 -15.92402 -15.63582 -15.10187 -14.38318 -14.25764 -14.16268 -14.00895 -13.63200 -13.47077 -13.29951 -13.23498 -12.93633 -12.89830 -12.69848 -12.52448 -12.23664 -11.71336 -11.31482 -11.13805 -10.66219 -10.60012 -10.16476 -9.70105 -9.21605 -8.20080 -6.29239 0.87532 1.33472 1.36465 1.38484 1.46296 1.53270 1.84572 2.12211 2.25505 2.36230 2.53174 2.79912 3.12038 3.44385 3.58193 3.92572 4.08872 4.19000 4.30904 4.51284 4.61782 4.64950 4.76189 4.99256 5.07159 5.14679 5.20657 5.27495 5.37042 5.54850 5.74035 5.81394 5.88159 6.10124 6.33740 6.58303 6.79050 7.14926 7.24845 7.41636 8.87753 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.006871 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.113731 B = 4073.891757 C = 5183.820028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.517 4.517 8 H 0.050 0.950 9 C 0.258 3.742 10 N -0.587 5.587 11 C 0.187 3.813 12 C -0.044 4.044 13 C -0.193 4.193 14 C -0.238 4.238 15 C -0.036 4.036 16 O -0.181 6.181 17 C 0.496 3.504 18 O -0.581 6.581 19 C 0.110 3.890 20 H 0.147 0.853 21 C -0.138 4.138 22 C 0.516 3.484 23 O -0.564 6.564 24 N -0.715 5.715 25 H 0.264 0.736 26 H 0.002 0.998 27 H 0.037 0.963 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.155 0.845 32 H 0.238 0.762 33 H 0.183 0.817 34 H 0.134 0.866 35 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.314 -10.375 8.768 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.556 4.556 8 H 0.068 0.932 9 C 0.137 3.863 10 N -0.318 5.318 11 C 0.065 3.935 12 C -0.094 4.094 13 C -0.213 4.213 14 C -0.257 4.257 15 C -0.104 4.104 16 O -0.078 6.078 17 C 0.283 3.717 18 O -0.460 6.460 19 C 0.001 3.999 20 H 0.164 0.836 21 C -0.178 4.178 22 C 0.303 3.697 23 O -0.442 6.442 24 N -0.374 5.374 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.143 0.857 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.173 0.827 32 H 0.254 0.746 33 H 0.200 0.800 34 H 0.152 0.848 35 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 10.980 -10.759 7.617 17.156 hybrid contribution 0.298 2.288 -0.597 2.383 sum 11.279 -8.472 7.020 15.756 Atomic orbital electron populations 1.70028 1.07177 1.27676 1.51911 1.25630 0.95536 1.02250 0.95206 0.85618 0.78920 0.80119 0.77711 1.19600 1.21394 1.19631 1.21586 0.92949 0.91521 1.49517 0.93185 1.18897 0.87576 0.83268 0.96517 1.48240 1.43998 1.34167 1.05381 1.20322 0.89535 0.97456 0.86202 1.22962 0.84618 1.00095 1.01773 1.21761 0.98082 0.97918 1.03537 1.22109 0.93371 1.03532 1.06706 1.24650 0.96965 0.90654 0.98101 1.83916 1.15612 1.47800 1.60424 1.21261 0.82217 0.84629 0.83601 1.90699 1.59213 1.63142 1.32975 1.22231 0.97995 0.94167 0.85542 0.83617 1.23717 1.05490 0.92302 0.96301 1.22422 0.76099 0.81357 0.89807 1.90700 1.60048 1.34552 1.58915 1.47698 1.56951 1.15740 1.17049 0.92683 0.97998 0.94509 0.85701 0.84992 0.84786 0.82724 0.74583 0.79962 0.84792 0.73519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.91 13.29 21.45 0.28 -53.62 16 2 C 0.01 0.69 5.46 84.65 0.46 1.15 16 3 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.52 -27.71 9.14 25.60 0.23 -27.48 16 8 H 0.05 2.74 7.65 -2.91 -0.02 2.72 16 9 C 0.26 12.54 5.20 85.63 0.45 12.99 16 10 N -0.59 -21.34 2.44 -830.50 -2.03 -23.36 16 11 C 0.19 4.62 5.69 85.63 0.49 5.11 16 12 C -0.04 -1.22 6.78 24.83 0.17 -1.05 16 13 C -0.19 -5.99 10.40 22.19 0.23 -5.76 16 14 C -0.24 -6.29 10.91 22.19 0.24 -6.05 16 15 C -0.04 -0.79 12.09 66.97 0.81 0.01 16 16 O -0.18 -4.44 9.45 -2.58 -0.02 -4.47 16 17 C 0.50 18.31 7.14 87.66 0.63 18.93 16 18 O -0.58 -28.29 16.21 -3.05 -0.05 -28.34 16 19 C 0.11 2.69 3.47 36.28 0.13 2.82 16 20 H 0.15 2.90 6.51 -2.39 -0.02 2.88 16 21 C -0.14 -2.43 6.95 29.71 0.21 -2.22 16 22 C 0.52 14.18 9.37 79.63 0.75 14.93 16 23 O -0.56 -19.94 18.03 -3.03 -0.05 -20.00 16 24 N -0.72 -19.26 7.07 -518.11 -3.66 -22.92 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.00 0.11 7.42 -2.38 -0.02 0.09 16 27 H 0.04 1.77 7.89 -2.39 -0.02 1.75 16 28 H 0.13 2.77 7.89 -2.39 -0.02 2.75 16 29 H 0.13 1.94 5.90 -2.39 -0.01 1.93 16 30 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 31 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.24 2.91 8.06 -2.91 -0.02 2.88 16 33 H 0.18 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.13 2.25 8.00 -2.39 -0.02 2.23 16 35 H 0.42 10.91 8.96 -92.70 -0.83 10.08 16 Total: -1.00 -80.05 310.79 1.58 -78.47 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.30 Total: 14.68 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 4.78 Total: 13.39 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -5.41 Total: -99.90 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -0.13 Total: -52.81 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -80.05 1.58 -78.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597025103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.764 kcal (2) G-P(sol) polarization free energy of solvation -80.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds