Wall clock time and date at job start Tue Mar 31 2020 00:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99652 * 2 1 4 4 H 1.48501 * 109.47411 * 264.86874 * 3 2 1 5 5 H 1.48500 * 109.47343 * 24.87416 * 3 2 1 6 6 H 1.48507 * 109.46848 * 144.87380 * 3 2 1 7 7 C 1.37881 * 120.00480 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99276 * 0.17299 * 7 2 1 9 9 C 1.50694 * 120.00317 * 180.17326 * 7 2 1 10 10 C 1.52993 * 115.55082 * 85.98136 * 9 7 2 11 11 N 1.46499 * 109.47409 * 64.85487 * 10 9 7 12 12 C 1.34775 * 120.00117 * 184.32450 * 11 10 9 13 13 O 1.21514 * 120.00188 * 5.16254 * 12 11 10 14 14 C 1.48171 * 119.99595 * 185.16806 * 12 11 10 15 15 C 1.38978 * 119.66115 * 183.68925 * 14 12 11 16 16 C 1.39374 * 119.10724 * 179.97438 * 15 14 12 17 17 O 1.35748 * 120.77992 * 179.97438 * 16 15 14 18 18 C 1.38960 * 118.44227 * 0.02562 * 16 15 14 19 19 C 1.38993 * 119.24662 * 0.27812 * 18 16 15 20 20 O 1.35675 * 119.58301 * 179.72086 * 19 18 16 21 21 N 1.32022 * 120.83081 * 359.42465 * 19 18 16 22 22 C 1.53003 * 117.49681 * 231.65208 * 9 7 2 23 23 C 1.53004 * 117.49484 * 300.31021 * 9 7 2 24 24 H 0.97000 * 120.00268 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47453 * 304.85460 * 10 9 7 26 26 H 1.09000 * 109.47336 * 184.85971 * 10 9 7 27 27 H 0.96996 * 119.99545 * 4.32589 * 11 10 9 28 28 H 1.08001 * 120.44293 * 359.95996 * 15 14 12 29 29 H 0.96696 * 114.00407 * 270.02484 * 17 16 15 30 30 H 1.07998 * 120.37543 * 179.97438 * 18 16 15 31 31 H 0.96697 * 113.99656 * 89.99832 * 20 19 18 32 32 H 1.08998 * 117.49508 * 214.99920 * 22 9 7 33 33 H 1.08998 * 117.49713 * 0.02562 * 22 9 7 34 34 H 1.08989 * 117.50055 * 359.97438 * 23 9 7 35 35 H 1.09001 * 117.49633 * 144.97904 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6050 1.9840 -1.3944 5 1 1.3965 2.6816 0.5889 6 1 3.4883 1.4739 0.8056 7 6 2.0047 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0038 9 6 3.5116 -1.1940 0.0034 10 6 4.1679 -1.0999 1.3822 11 7 3.8470 -2.3001 2.1587 12 6 4.2471 -2.3995 3.4419 13 8 4.7912 -1.4575 3.9834 14 6 4.0237 -3.6575 4.1922 15 6 4.3688 -3.7270 5.5366 16 6 4.1531 -4.9158 6.2314 17 8 4.4781 -5.0214 7.5452 18 6 3.5986 -5.9908 5.5474 19 6 3.2844 -5.8497 4.2008 20 8 2.7480 -6.8968 3.5249 21 7 3.4959 -4.7080 3.5727 22 6 4.2208 -2.0339 -1.0608 23 6 4.2210 -0.5067 -1.1651 24 1 -0.4850 0.8400 0.0004 25 1 3.7934 -0.2190 1.9036 26 1 5.2487 -1.0208 1.2656 27 1 3.3467 -3.0231 1.7493 28 1 4.7986 -2.8713 6.0362 29 1 5.3813 -5.3283 7.7035 30 1 3.4185 -6.9268 6.0551 31 1 1.7817 -6.9256 3.5471 32 1 5.1550 -2.5194 -0.7785 33 1 3.5974 -2.5862 -1.7639 34 1 3.5978 -0.0550 -1.9368 35 1 5.1552 0.0127 -0.9514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597610446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:57 Heat of formation + Delta-G solvation = -50.684747 kcal Electronic energy + Delta-G solvation = -21060.317395 eV Core-core repulsion = 17639.242192 eV Total energy + Delta-G solvation = -3421.075203 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96957 -39.09388 -38.25157 -37.14756 -36.47253 -33.58131 -32.12077 -31.47944 -30.64741 -27.09831 -25.51342 -24.05571 -23.38022 -21.74391 -20.71877 -19.51429 -18.91872 -17.97971 -17.57898 -16.84124 -16.29677 -16.00686 -15.53176 -15.13943 -15.06012 -14.93120 -14.53463 -13.90479 -13.33574 -13.12711 -12.94674 -12.71646 -12.41185 -12.05267 -11.96195 -11.26704 -11.16046 -10.76601 -10.49919 -10.29825 -10.19392 -9.84835 -9.72352 -9.46919 -9.24533 -9.18593 -8.66431 -8.57541 -8.33844 -6.14377 -4.18975 0.43064 0.76732 2.70298 3.12096 3.29687 3.39347 3.43060 3.55046 3.66993 3.79919 4.40608 4.50367 4.68014 4.73379 4.92999 5.13381 5.17879 5.28042 5.46295 5.67349 5.78274 6.01168 6.05314 6.06467 6.18703 6.43208 6.46894 6.70470 6.95622 7.03376 7.08712 7.10332 7.23409 7.54300 7.67919 8.09655 8.42801 8.59746 8.86768 9.48399 10.97010 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.004602 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.852193 B = 6082.198424 C = 6343.511959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.080 3.920 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.259 1.259 7 C -0.489 4.489 8 H 0.079 0.921 9 C -0.018 4.018 10 C 0.151 3.849 11 N -0.674 5.674 12 C 0.559 3.441 13 O -0.545 6.545 14 C 0.135 3.865 15 C -0.152 4.152 16 C 0.161 3.839 17 O -0.487 6.487 18 C -0.201 4.201 19 C 0.330 3.670 20 O -0.478 6.478 21 N -0.477 5.477 22 C -0.176 4.176 23 C -0.193 4.193 24 H 0.265 0.735 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.416 0.584 28 H 0.158 0.842 29 H 0.400 0.600 30 H 0.150 0.850 31 H 0.406 0.594 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.569 -11.663 10.363 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.123 4.123 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.183 1.183 7 C -0.526 4.526 8 H 0.097 0.903 9 C -0.019 4.019 10 C 0.027 3.973 11 N -0.322 5.322 12 C 0.342 3.658 13 O -0.423 6.423 14 C -0.004 4.004 15 C -0.174 4.174 16 C 0.108 3.892 17 O -0.298 6.298 18 C -0.223 4.223 19 C 0.148 3.852 20 O -0.286 6.286 21 N -0.200 5.200 22 C -0.214 4.214 23 C -0.231 4.231 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.253 0.747 28 H 0.176 0.824 29 H 0.258 0.742 30 H 0.167 0.833 31 H 0.264 0.736 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.559 -10.774 9.797 16.891 hybrid contribution 0.220 0.347 0.645 0.765 sum 8.778 -10.426 10.442 17.170 Atomic orbital electron populations 1.69882 1.06376 1.27259 1.49663 1.24969 0.94588 0.99112 0.93636 0.86878 0.80414 0.83222 0.78775 1.20156 1.22102 1.18327 1.20188 0.85963 0.94573 1.51907 0.90303 1.19613 0.95380 1.01007 0.85935 1.21312 0.96923 0.86820 0.92208 1.45745 1.54016 1.21738 1.10666 1.17750 0.80098 0.85534 0.82404 1.90762 1.44857 1.37904 1.68794 1.20961 0.95513 0.92505 0.91427 1.22464 1.01055 0.99654 0.94210 1.18406 0.95524 0.91696 0.83542 1.84775 1.36518 1.89336 1.19215 1.22539 1.04946 1.00724 0.94063 1.18830 0.94574 0.85385 0.86375 1.84777 1.26816 1.41600 1.75357 1.67161 1.13101 0.99231 1.40489 1.22840 1.01118 0.92836 1.04581 1.22977 1.01404 0.95210 1.03478 0.92478 0.91021 0.93508 0.74740 0.82400 0.74194 0.83255 0.73570 0.90822 0.89291 0.89020 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 3 Si 0.88 21.49 24.84 -169.99 -4.22 17.26 16 4 H -0.28 -6.53 7.05 56.52 0.40 -6.13 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.26 -6.09 5.85 56.52 0.33 -5.75 16 7 C -0.49 -13.02 9.28 -34.44 -0.32 -13.34 16 8 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 9 C -0.02 -0.40 0.84 -155.66 -0.13 -0.54 16 10 C 0.15 3.21 5.21 -4.05 -0.02 3.19 16 11 N -0.67 -13.37 5.43 -61.15 -0.33 -13.70 16 12 C 0.56 10.65 7.80 -12.18 -0.10 10.56 16 13 O -0.54 -11.51 16.31 5.35 0.09 -11.43 16 14 C 0.13 2.14 6.74 -83.06 -0.56 1.58 16 15 C -0.15 -2.01 9.59 -38.88 -0.37 -2.38 16 16 C 0.16 1.72 6.77 -38.89 -0.26 1.46 16 17 O -0.49 -4.11 13.54 -18.95 -0.26 -4.36 16 18 C -0.20 -2.04 10.00 -39.03 -0.39 -2.43 16 19 C 0.33 4.09 7.74 -17.19 -0.13 3.95 16 20 O -0.48 -5.06 13.56 -18.73 -0.25 -5.31 16 21 N -0.48 -7.30 9.58 -9.94 -0.10 -7.39 16 22 C -0.18 -3.43 9.96 -26.69 -0.27 -3.69 16 23 C -0.19 -3.95 7.64 -26.69 -0.20 -4.16 16 24 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.07 1.69 6.54 -51.93 -0.34 1.35 16 26 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 27 H 0.42 8.12 7.79 -40.82 -0.32 7.81 16 28 H 0.16 2.03 7.63 -52.49 -0.40 1.62 16 29 H 0.40 1.27 9.06 45.56 0.41 1.68 16 30 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.41 2.40 9.06 45.56 0.41 2.82 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.09 1.97 7.23 -51.94 -0.38 1.59 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -33.56 308.54 -4.86 -38.42 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -2.35 Total: 11.41 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.85 Total: -3.66 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.35 Total: -46.98 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.42 Total: -21.10 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.22 Total: 17.26 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.56 -4.86 -38.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.269 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds