Wall clock time and date at job start Tue Mar 31 2020 00:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99652 * 2 1 4 4 H 1.48501 * 109.47411 * 264.86874 * 3 2 1 5 5 H 1.48500 * 109.47343 * 24.87416 * 3 2 1 6 6 H 1.48507 * 109.46848 * 144.87380 * 3 2 1 7 7 C 1.37881 * 120.00480 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99276 * 0.17299 * 7 2 1 9 9 C 1.50694 * 120.00317 * 180.17326 * 7 2 1 10 10 C 1.52993 * 115.55082 * 85.98136 * 9 7 2 11 11 N 1.46499 * 109.47409 * 64.85487 * 10 9 7 12 12 C 1.34775 * 120.00117 * 184.32450 * 11 10 9 13 13 O 1.21514 * 120.00188 * 5.16254 * 12 11 10 14 14 C 1.48171 * 119.99595 * 185.16806 * 12 11 10 15 15 C 1.38978 * 119.66115 * 183.68925 * 14 12 11 16 16 C 1.39374 * 119.10724 * 179.97438 * 15 14 12 17 17 O 1.35748 * 120.77992 * 179.97438 * 16 15 14 18 18 C 1.38960 * 118.44227 * 0.02562 * 16 15 14 19 19 C 1.38993 * 119.24662 * 0.27812 * 18 16 15 20 20 O 1.35675 * 119.58301 * 179.72086 * 19 18 16 21 21 N 1.32022 * 120.83081 * 359.42465 * 19 18 16 22 22 C 1.53003 * 117.49681 * 231.65208 * 9 7 2 23 23 C 1.53004 * 117.49484 * 300.31021 * 9 7 2 24 24 H 0.97000 * 120.00268 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47453 * 304.85460 * 10 9 7 26 26 H 1.09000 * 109.47336 * 184.85971 * 10 9 7 27 27 H 0.96996 * 119.99545 * 4.32589 * 11 10 9 28 28 H 1.08001 * 120.44293 * 359.95996 * 15 14 12 29 29 H 0.96696 * 114.00407 * 270.02484 * 17 16 15 30 30 H 1.07998 * 120.37543 * 179.97438 * 18 16 15 31 31 H 0.96697 * 113.99656 * 89.99832 * 20 19 18 32 32 H 1.08998 * 117.49508 * 214.99920 * 22 9 7 33 33 H 1.08998 * 117.49713 * 0.02562 * 22 9 7 34 34 H 1.08989 * 117.50055 * 359.97438 * 23 9 7 35 35 H 1.09001 * 117.49633 * 144.97904 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6050 1.9840 -1.3944 5 1 1.3965 2.6816 0.5889 6 1 3.4883 1.4739 0.8056 7 6 2.0047 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0038 9 6 3.5116 -1.1940 0.0034 10 6 4.1679 -1.0999 1.3822 11 7 3.8470 -2.3001 2.1587 12 6 4.2471 -2.3995 3.4419 13 8 4.7912 -1.4575 3.9834 14 6 4.0237 -3.6575 4.1922 15 6 4.3688 -3.7270 5.5366 16 6 4.1531 -4.9158 6.2314 17 8 4.4781 -5.0214 7.5452 18 6 3.5986 -5.9908 5.5474 19 6 3.2844 -5.8497 4.2008 20 8 2.7480 -6.8968 3.5249 21 7 3.4959 -4.7080 3.5727 22 6 4.2208 -2.0339 -1.0608 23 6 4.2210 -0.5067 -1.1651 24 1 -0.4850 0.8400 0.0004 25 1 3.7934 -0.2190 1.9036 26 1 5.2487 -1.0208 1.2656 27 1 3.3467 -3.0231 1.7493 28 1 4.7986 -2.8713 6.0362 29 1 5.3813 -5.3283 7.7035 30 1 3.4185 -6.9268 6.0551 31 1 1.7817 -6.9256 3.5471 32 1 5.1550 -2.5194 -0.7785 33 1 3.5974 -2.5862 -1.7639 34 1 3.5978 -0.0550 -1.9368 35 1 5.1552 0.0127 -0.9514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597610446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:56 Heat of formation + Delta-G solvation = -81.912901 kcal Electronic energy + Delta-G solvation = -21061.671549 eV Core-core repulsion = 17639.242192 eV Total energy + Delta-G solvation = -3422.429357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.98918 -40.48966 -39.02050 -38.77021 -37.44800 -35.14128 -34.22196 -32.41495 -31.66530 -28.70432 -27.40891 -25.29701 -24.30196 -23.35115 -21.93160 -21.17272 -20.17528 -19.04337 -18.54149 -18.40372 -17.51293 -17.11653 -16.91684 -16.77120 -16.37106 -16.12171 -15.73630 -15.45022 -14.82919 -14.67269 -14.36520 -14.09911 -13.94409 -13.59536 -13.09230 -12.84031 -12.62302 -12.18842 -12.06514 -12.00313 -11.69129 -11.52449 -10.99557 -10.81020 -10.68013 -10.62891 -10.37179 -10.25275 -9.92030 -8.29877 -6.36815 -0.58565 -0.12355 1.34960 1.39726 1.49106 1.52344 1.96461 2.36671 2.43120 2.58230 2.90033 3.04615 3.19060 3.48564 3.78339 3.80759 4.00233 4.27302 4.33523 4.34300 4.41075 4.48859 4.53174 4.78358 4.87160 4.88236 5.08820 5.21280 5.28368 5.43534 5.49952 5.68581 6.28049 6.34937 6.56274 6.63080 6.71063 6.74401 7.10062 7.33598 8.85024 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.004602 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.852193 B = 6082.198424 C = 6343.511959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.259 1.259 5 H -0.303 1.303 6 H -0.243 1.243 7 C -0.479 4.479 8 H 0.040 0.960 9 C -0.045 4.045 10 C 0.158 3.842 11 N -0.680 5.680 12 C 0.557 3.443 13 O -0.573 6.573 14 C 0.110 3.890 15 C -0.154 4.154 16 C 0.178 3.822 17 O -0.487 6.487 18 C -0.178 4.178 19 C 0.324 3.676 20 O -0.483 6.483 21 N -0.507 5.507 22 C -0.153 4.153 23 C -0.187 4.187 24 H 0.264 0.736 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.415 0.585 28 H 0.157 0.843 29 H 0.426 0.574 30 H 0.185 0.815 31 H 0.424 0.576 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.618 -12.956 11.410 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.173 4.173 3 Si 0.757 3.243 4 H -0.184 1.184 5 H -0.230 1.230 6 H -0.167 1.167 7 C -0.517 4.517 8 H 0.058 0.942 9 C -0.046 4.046 10 C 0.035 3.965 11 N -0.328 5.328 12 C 0.343 3.657 13 O -0.453 6.453 14 C -0.028 4.028 15 C -0.176 4.176 16 C 0.124 3.876 17 O -0.302 6.302 18 C -0.200 4.200 19 C 0.143 3.857 20 O -0.294 6.294 21 N -0.231 5.231 22 C -0.190 4.190 23 C -0.224 4.224 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.252 0.748 28 H 0.174 0.826 29 H 0.288 0.712 30 H 0.202 0.798 31 H 0.286 0.714 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.637 -12.101 10.846 19.422 hybrid contribution -0.456 0.540 0.408 0.816 sum 10.181 -11.561 11.255 19.078 Atomic orbital electron populations 1.70023 1.08161 1.27938 1.52383 1.25746 0.95153 1.02620 0.93789 0.86015 0.79601 0.78959 0.79712 1.18400 1.23011 1.16669 1.20332 0.88572 0.92799 1.49987 0.94209 1.19456 0.92972 1.04743 0.87435 1.21091 0.97717 0.86494 0.91229 1.45753 1.54502 1.21269 1.11229 1.18239 0.78987 0.86518 0.81999 1.90723 1.46024 1.39326 1.69230 1.20444 0.98514 0.91665 0.92147 1.22504 1.00940 1.00839 0.93338 1.18287 0.94443 0.90686 0.84140 1.84736 1.38686 1.89414 1.17353 1.22791 1.02575 1.01659 0.92961 1.19056 0.94575 0.84789 0.87293 1.84744 1.28630 1.40613 1.75372 1.67008 1.14140 1.00181 1.41744 1.22867 1.01473 0.92540 1.02145 1.23044 1.01840 0.96148 1.01396 0.92665 0.93733 0.91488 0.74827 0.82583 0.71170 0.79811 0.71364 0.87886 0.89721 0.90136 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.48 13.96 21.45 0.30 -58.18 16 2 C 0.02 1.42 5.47 84.66 0.46 1.88 16 3 Si 0.93 44.50 24.84 68.60 1.70 46.21 16 4 H -0.26 -11.60 7.05 99.48 0.70 -10.90 16 5 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 6 H -0.24 -10.92 5.85 99.48 0.58 -10.34 16 7 C -0.48 -26.20 9.28 25.60 0.24 -25.96 16 8 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 9 C -0.04 -1.97 0.84 -52.93 -0.04 -2.02 16 10 C 0.16 6.68 5.21 86.38 0.45 7.13 16 11 N -0.68 -27.29 5.43 -465.67 -2.53 -29.82 16 12 C 0.56 21.54 7.80 86.88 0.68 22.22 16 13 O -0.57 -24.53 16.31 -3.76 -0.06 -24.59 16 14 C 0.11 3.47 6.74 41.80 0.28 3.75 16 15 C -0.15 -3.91 9.59 22.72 0.22 -3.69 16 16 C 0.18 3.30 6.77 22.72 0.15 3.45 16 17 O -0.49 -6.41 13.54 -90.73 -1.23 -7.63 16 18 C -0.18 -3.03 10.00 22.62 0.23 -2.81 16 19 C 0.32 7.44 7.74 84.85 0.66 8.09 16 20 O -0.48 -9.24 13.56 -89.92 -1.22 -10.46 16 21 N -0.51 -15.29 9.58 -298.36 -2.86 -18.15 16 22 C -0.15 -5.63 9.96 30.62 0.30 -5.32 16 23 C -0.19 -7.19 7.64 30.62 0.23 -6.96 16 24 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.04 2.10 6.54 -2.39 -0.02 2.08 16 26 H 0.07 2.54 8.09 -2.39 -0.02 2.52 16 27 H 0.42 16.62 7.79 -92.71 -0.72 15.90 16 28 H 0.16 3.92 7.63 -2.91 -0.02 3.90 16 29 H 0.43 0.96 9.06 -74.06 -0.67 0.29 16 30 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16 31 H 0.42 4.22 9.06 -74.06 -0.67 3.55 16 32 H 0.10 3.21 8.14 -2.39 -0.02 3.20 16 33 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.08 3.30 7.23 -2.39 -0.02 3.28 16 35 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -74.86 308.54 -3.06 -77.93 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -1.02 Total: 24.93 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 3.86 Total: -0.23 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -5.09 Total: -106.15 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -2.51 Total: -42.69 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.70 Total: 46.21 kcal Total: -74.86 -3.06 -77.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.987 kcal (2) G-P(sol) polarization free energy of solvation -74.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds