Wall clock time and date at job start Tue Mar 31 2020 00:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37833 * 120.04534 * 2 1 4 4 C 1.38509 * 120.29752 * 179.97438 * 3 2 1 5 5 C 1.38101 * 120.39039 * 0.23371 * 4 3 2 6 6 C 1.38669 * 120.08366 * 359.48367 * 5 4 3 7 7 O 1.35650 * 120.14848 * 180.28111 * 6 5 4 8 8 C 1.39675 * 120.04610 * 179.97438 * 2 1 3 9 9 C 1.47539 * 120.19273 * 0.04332 * 8 2 1 10 10 O 1.21587 * 119.99953 * 89.99837 * 9 8 2 11 11 N 1.34779 * 119.99762 * 270.00224 * 9 8 2 12 12 C 1.46498 * 119.99557 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46949 * 179.97438 * 12 11 9 14 14 O 1.21298 * 120.00091 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00089 * 180.02562 * 13 12 11 16 16 C 1.37094 * 120.00079 * 180.02562 * 15 13 12 17 17 H 1.07995 * 120.00251 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00039 * 179.97438 * 16 15 13 19 19 N 1.31417 * 119.99987 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00193 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47444 * 89.99683 * 20 18 16 22 22 H 1.48500 * 109.46882 * 209.99827 * 20 18 16 23 23 H 1.48499 * 109.46513 * 329.99557 * 20 18 16 24 24 H 1.08999 * 109.47059 * 90.00204 * 1 2 3 25 25 H 1.08998 * 109.47051 * 210.00145 * 1 2 3 26 26 H 1.08998 * 109.47308 * 330.00678 * 1 2 3 27 27 H 1.07995 * 119.84701 * 359.97245 * 3 2 1 28 28 H 1.08002 * 119.79989 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.95632 * 179.74966 * 5 4 3 30 30 H 0.96698 * 114.00125 * 270.25464 * 7 6 5 31 31 H 0.97000 * 119.99892 * 0.02562 * 11 9 8 32 32 H 1.09000 * 109.47522 * 300.00189 * 12 11 9 33 33 H 1.08998 * 109.46851 * 60.00595 * 12 11 9 34 34 H 0.96997 * 119.99891 * 0.02562 * 15 13 12 35 35 H 0.97006 * 119.99881 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1931 0.0000 4 6 3.5822 1.1992 0.0005 5 6 4.2860 0.0111 -0.0038 6 6 3.6080 -1.1985 0.0021 7 8 4.2981 -2.3664 0.0036 8 6 2.2063 -1.2091 0.0005 9 6 1.4740 -2.4898 0.0001 10 8 1.1729 -3.0176 -1.0530 11 7 1.1387 -3.0747 1.1672 12 6 0.4110 -4.3462 1.1668 13 6 0.1613 -4.7825 2.5875 14 8 0.5523 -4.0984 3.5097 15 7 -0.4964 -5.9329 2.8334 16 6 -0.7240 -6.3296 4.1258 17 1 -0.3759 -5.7205 4.9469 18 6 -1.4026 -7.5153 4.3794 19 7 -1.6204 -7.8957 5.6183 20 14 -2.0042 -8.5692 2.9592 21 1 -0.9485 -9.5437 2.5840 22 1 -3.2295 -9.3007 3.3701 23 1 -2.3130 -7.7010 1.7947 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6554 2.1274 -0.0005 28 1 4.1148 2.1388 0.0001 29 1 5.3660 0.0240 -0.0074 30 1 4.4988 -2.7058 -0.8793 31 1 1.3786 -2.6534 2.0074 32 1 -0.5416 -4.2195 0.6525 33 1 1.0033 -5.1035 0.6533 34 1 -0.8088 -6.4801 2.0960 35 1 -2.0938 -8.7237 5.7952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599934547.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:21 Heat of formation + Delta-G solvation = -89.598269 kcal Electronic energy + Delta-G solvation = -20857.834255 eV Core-core repulsion = 17435.071635 eV Total energy + Delta-G solvation = -3422.762620 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61000 -39.00929 -38.08261 -37.09261 -34.52936 -33.75535 -32.80748 -31.80557 -30.53938 -27.97082 -27.16714 -24.63799 -23.30234 -21.93433 -20.32925 -19.66205 -18.77582 -18.24271 -17.62830 -16.44595 -16.06635 -15.78360 -15.27989 -15.10396 -15.01643 -14.66491 -13.97851 -13.72021 -13.65458 -13.50820 -13.12260 -12.88699 -12.50254 -12.19762 -12.15291 -12.03701 -11.96495 -11.79077 -11.24074 -10.92077 -10.64829 -10.06978 -9.91215 -9.70221 -9.04601 -8.92983 -8.82789 -8.77442 -8.30766 -6.40880 -3.93491 0.84285 1.00890 2.62519 2.99062 3.03799 3.11222 3.15564 3.41141 3.55595 3.94028 4.03258 4.50963 4.56242 4.63328 4.76284 5.01626 5.07744 5.13779 5.29601 5.45547 5.50789 5.57234 5.66426 5.75009 5.78645 5.91928 6.04874 6.08406 6.23230 6.50553 6.51083 7.42772 7.43548 7.67355 7.99724 8.27325 8.45347 8.81557 9.29440 9.63066 10.71289 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030985 B = 0.003657 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.431699 B = 7655.176959 C = 7691.317417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.032 4.032 3 C -0.133 4.133 4 C -0.086 4.086 5 C -0.155 4.155 6 C 0.146 3.854 7 O -0.491 6.491 8 C -0.150 4.150 9 C 0.571 3.429 10 O -0.545 6.545 11 N -0.694 5.694 12 C 0.105 3.895 13 C 0.438 3.562 14 O -0.577 6.577 15 N -0.576 5.576 16 C -0.310 4.310 17 H 0.122 0.878 18 C 0.045 3.955 19 N -0.874 5.874 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.267 1.267 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.395 0.605 31 H 0.414 0.586 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.374 0.626 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.484 15.148 -14.489 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.033 4.033 3 C -0.151 4.151 4 C -0.104 4.104 5 C -0.173 4.173 6 C 0.101 3.899 7 O -0.302 6.302 8 C -0.154 4.154 9 C 0.356 3.644 10 O -0.423 6.423 11 N -0.348 5.348 12 C -0.023 4.023 13 C 0.224 3.776 14 O -0.461 6.461 15 N -0.214 5.214 16 C -0.439 4.439 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.513 5.513 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.192 1.192 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.253 0.747 31 H 0.253 0.747 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.207 0.793 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.382 15.068 -13.810 21.732 hybrid contribution -0.337 -0.937 -1.044 1.443 sum 7.044 14.131 -14.855 21.679 Atomic orbital electron populations 1.20924 0.90296 1.03684 1.03161 1.19837 0.96364 0.91202 0.95923 1.20986 0.94240 0.97404 1.02475 1.21137 0.94074 0.97827 0.97380 1.21355 1.00710 0.91484 1.03751 1.18399 0.87952 0.85982 0.97595 1.84767 1.75013 1.36632 1.33822 1.20180 0.93512 0.93851 1.07839 1.17945 0.78587 0.83982 0.83873 1.90786 1.55316 1.64947 1.31299 1.45715 1.56669 1.23059 1.09309 1.21022 0.97787 0.86532 0.96930 1.19610 0.84667 0.83773 0.89567 1.90554 1.55298 1.54911 1.45301 1.42111 1.50613 1.20124 1.08519 1.19445 1.34902 1.06594 0.82914 0.86070 1.25065 0.97089 0.97001 0.96733 1.69623 1.40133 1.23366 1.18191 0.86668 0.79690 0.81200 0.81919 1.19381 1.19972 1.19245 0.90271 0.91011 0.90563 0.85133 0.85198 0.84845 0.74732 0.74705 0.89590 0.89548 0.79254 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.62 36.01 0.35 -0.97 16 2 C -0.03 -0.38 5.91 -104.23 -0.62 -1.00 16 3 C -0.13 -1.23 9.68 -39.63 -0.38 -1.62 16 4 C -0.09 -0.74 10.03 -39.53 -0.40 -1.13 16 5 C -0.15 -1.52 9.98 -39.47 -0.39 -1.92 16 6 C 0.15 1.82 6.72 -38.70 -0.26 1.56 16 7 O -0.49 -6.04 12.95 -18.65 -0.24 -6.28 16 8 C -0.15 -2.07 5.64 -104.84 -0.59 -2.66 16 9 C 0.57 9.29 5.25 -12.47 -0.07 9.23 16 10 O -0.55 -10.10 17.11 5.29 0.09 -10.01 16 11 N -0.69 -11.83 5.52 -62.53 -0.35 -12.18 16 12 C 0.10 1.86 6.15 -5.19 -0.03 1.83 16 13 C 0.44 9.79 7.85 -10.98 -0.09 9.70 16 14 O -0.58 -14.88 15.24 5.54 0.08 -14.80 16 15 N -0.58 -13.50 5.09 -10.96 -0.06 -13.55 16 16 C -0.31 -8.60 10.16 -14.94 -0.15 -8.75 16 17 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 18 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 19 N -0.87 -25.05 13.96 55.50 0.77 -24.27 16 20 Si 0.88 19.04 27.74 -169.99 -4.71 14.32 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.28 6.52 56.52 0.37 -4.92 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.89 7.08 -51.93 -0.37 0.52 16 26 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 28 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.40 3.20 9.06 45.56 0.41 3.61 16 31 H 0.41 7.30 7.42 -40.82 -0.30 7.00 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 35 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -34.09 312.54 -5.43 -39.52 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -3.01 Total: 17.14 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -2.73 Total: 5.40 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.37 Total: -50.00 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.07 Total: -31.09 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.09 -5.43 -39.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599934547.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.075 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds