Wall clock time and date at job start Tue Mar 31 2020 00:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37833 * 120.04534 * 2 1 4 4 C 1.38509 * 120.29752 * 179.97438 * 3 2 1 5 5 C 1.38101 * 120.39039 * 0.23371 * 4 3 2 6 6 C 1.38669 * 120.08366 * 359.48367 * 5 4 3 7 7 O 1.35650 * 120.14848 * 180.28111 * 6 5 4 8 8 C 1.39675 * 120.04610 * 179.97438 * 2 1 3 9 9 C 1.47539 * 120.19273 * 0.04332 * 8 2 1 10 10 O 1.21587 * 119.99953 * 89.99837 * 9 8 2 11 11 N 1.34779 * 119.99762 * 270.00224 * 9 8 2 12 12 C 1.46498 * 119.99557 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46949 * 179.97438 * 12 11 9 14 14 O 1.21298 * 120.00091 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00089 * 180.02562 * 13 12 11 16 16 C 1.37094 * 120.00079 * 180.02562 * 15 13 12 17 17 H 1.07995 * 120.00251 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00039 * 179.97438 * 16 15 13 19 19 N 1.31417 * 119.99987 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00193 * 0.02562 * 18 16 15 21 21 H 1.48492 * 109.47444 * 89.99683 * 20 18 16 22 22 H 1.48500 * 109.46882 * 209.99827 * 20 18 16 23 23 H 1.48499 * 109.46513 * 329.99557 * 20 18 16 24 24 H 1.08999 * 109.47059 * 90.00204 * 1 2 3 25 25 H 1.08998 * 109.47051 * 210.00145 * 1 2 3 26 26 H 1.08998 * 109.47308 * 330.00678 * 1 2 3 27 27 H 1.07995 * 119.84701 * 359.97245 * 3 2 1 28 28 H 1.08002 * 119.79989 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.95632 * 179.74966 * 5 4 3 30 30 H 0.96698 * 114.00125 * 270.25464 * 7 6 5 31 31 H 0.97000 * 119.99892 * 0.02562 * 11 9 8 32 32 H 1.09000 * 109.47522 * 300.00189 * 12 11 9 33 33 H 1.08998 * 109.46851 * 60.00595 * 12 11 9 34 34 H 0.96997 * 119.99891 * 0.02562 * 15 13 12 35 35 H 0.97006 * 119.99881 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1931 0.0000 4 6 3.5822 1.1992 0.0005 5 6 4.2860 0.0111 -0.0038 6 6 3.6080 -1.1985 0.0021 7 8 4.2981 -2.3664 0.0036 8 6 2.2063 -1.2091 0.0005 9 6 1.4740 -2.4898 0.0001 10 8 1.1729 -3.0176 -1.0530 11 7 1.1387 -3.0747 1.1672 12 6 0.4110 -4.3462 1.1668 13 6 0.1613 -4.7825 2.5875 14 8 0.5523 -4.0984 3.5097 15 7 -0.4964 -5.9329 2.8334 16 6 -0.7240 -6.3296 4.1258 17 1 -0.3759 -5.7205 4.9469 18 6 -1.4026 -7.5153 4.3794 19 7 -1.6204 -7.8957 5.6183 20 14 -2.0042 -8.5692 2.9592 21 1 -0.9485 -9.5437 2.5840 22 1 -3.2295 -9.3007 3.3701 23 1 -2.3130 -7.7010 1.7947 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6554 2.1274 -0.0005 28 1 4.1148 2.1388 0.0001 29 1 5.3660 0.0240 -0.0074 30 1 4.4988 -2.7058 -0.8793 31 1 1.3786 -2.6534 2.0074 32 1 -0.5416 -4.2195 0.6525 33 1 1.0033 -5.1035 0.6533 34 1 -0.8088 -6.4801 2.0960 35 1 -2.0938 -8.7237 5.7952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599934547.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:20 Heat of formation + Delta-G solvation = -117.900599 kcal Electronic energy + Delta-G solvation = -20859.061536 eV Core-core repulsion = 17435.071635 eV Total energy + Delta-G solvation = -3423.989901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66681 -40.52735 -39.51489 -37.93323 -36.33125 -35.38112 -33.87468 -33.60484 -31.47941 -29.42310 -28.04224 -26.41282 -24.39027 -22.77846 -21.52852 -21.49318 -20.58864 -19.24717 -18.85834 -17.59052 -17.39798 -17.11668 -16.78794 -16.48560 -16.37413 -15.91471 -15.20781 -15.13310 -14.85556 -14.57330 -14.41010 -14.29322 -14.05074 -13.70876 -13.60740 -12.98712 -12.84581 -12.76238 -12.58445 -12.46795 -12.01555 -11.83659 -11.60891 -11.09800 -10.70858 -10.37535 -10.27867 -9.88058 -9.60338 -8.47526 -6.10034 0.01604 0.23873 1.29422 1.32578 1.38752 1.42848 1.75571 1.95039 2.19055 2.55535 2.81690 3.08259 3.14077 3.57838 3.79457 3.95612 4.01264 4.27625 4.31222 4.32960 4.36198 4.57905 4.67219 4.70185 4.85842 5.11469 5.14663 5.27185 5.36106 5.45763 5.46085 5.81135 5.85201 6.32849 6.45931 6.67931 6.75284 6.96653 7.25751 7.74745 8.68958 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030985 B = 0.003657 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.431699 B = 7655.176959 C = 7691.317417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.046 4.046 3 C -0.130 4.130 4 C -0.075 4.075 5 C -0.156 4.156 6 C 0.129 3.871 7 O -0.509 6.509 8 C -0.184 4.184 9 C 0.578 3.422 10 O -0.571 6.571 11 N -0.700 5.700 12 C 0.116 3.884 13 C 0.444 3.556 14 O -0.615 6.615 15 N -0.575 5.575 16 C -0.334 4.334 17 H 0.062 0.938 18 C -0.007 4.007 19 N -0.925 5.925 20 Si 0.960 3.040 21 H -0.256 1.256 22 H -0.272 1.272 23 H -0.232 1.232 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.099 0.901 27 H 0.162 0.838 28 H 0.168 0.832 29 H 0.154 0.846 30 H 0.409 0.591 31 H 0.411 0.589 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.392 0.608 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.721 16.355 -17.216 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.046 4.046 3 C -0.148 4.148 4 C -0.092 4.092 5 C -0.174 4.174 6 C 0.084 3.916 7 O -0.322 6.322 8 C -0.187 4.187 9 C 0.365 3.635 10 O -0.451 6.451 11 N -0.352 5.352 12 C -0.011 4.011 13 C 0.231 3.769 14 O -0.501 6.501 15 N -0.215 5.215 16 C -0.463 4.463 17 H 0.080 0.920 18 C -0.207 4.207 19 N -0.564 5.564 20 Si 0.780 3.220 21 H -0.181 1.181 22 H -0.196 1.196 23 H -0.156 1.156 24 H 0.102 0.898 25 H 0.065 0.935 26 H 0.118 0.882 27 H 0.179 0.821 28 H 0.185 0.815 29 H 0.172 0.828 30 H 0.268 0.732 31 H 0.248 0.752 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.228 0.772 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.630 16.291 -16.564 24.454 hybrid contribution -0.319 -1.167 -0.123 1.216 sum 7.311 15.124 -16.687 23.678 Atomic orbital electron populations 1.20945 0.90029 1.03613 1.03415 1.20069 0.96835 0.91440 0.96284 1.21369 0.94844 0.97551 1.01009 1.21615 0.93974 0.98803 0.94857 1.21645 1.01867 0.90916 1.03006 1.18665 0.87663 0.86858 0.98441 1.84720 1.75001 1.37174 1.35329 1.20180 0.94191 0.93175 1.11157 1.18321 0.77771 0.84504 0.82876 1.90752 1.56473 1.65982 1.31939 1.45798 1.56937 1.22878 1.09598 1.20954 0.99438 0.87480 0.93250 1.20452 0.82562 0.82650 0.91192 1.90539 1.56254 1.55938 1.47373 1.41899 1.51307 1.20876 1.07422 1.19031 1.36635 1.07083 0.83503 0.91970 1.26081 0.96355 0.97963 1.00308 1.69784 1.41038 1.24338 1.21274 0.85432 0.79105 0.79113 0.78388 1.18069 1.19645 1.15569 0.89841 0.93456 0.88215 0.82076 0.81477 0.82786 0.73170 0.75181 0.87380 0.87682 0.77158 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.62 71.24 0.69 -1.79 16 2 C -0.05 -1.00 5.91 -19.61 -0.12 -1.11 16 3 C -0.13 -1.99 9.68 22.24 0.22 -1.78 16 4 C -0.07 -1.00 10.03 22.30 0.22 -0.78 16 5 C -0.16 -2.69 9.98 22.34 0.22 -2.47 16 6 C 0.13 3.10 6.72 22.84 0.15 3.25 16 7 O -0.51 -12.36 12.95 -89.65 -1.16 -13.52 16 8 C -0.18 -4.97 5.64 -20.01 -0.11 -5.08 16 9 C 0.58 18.75 5.25 86.70 0.46 19.21 16 10 O -0.57 -20.96 17.11 -3.99 -0.07 -21.02 16 11 N -0.70 -23.91 5.52 -470.00 -2.60 -26.51 16 12 C 0.12 4.01 6.15 85.63 0.53 4.54 16 13 C 0.44 20.05 7.85 87.66 0.69 20.74 16 14 O -0.62 -33.01 15.24 -3.09 -0.05 -33.06 16 15 N -0.58 -26.96 5.09 -306.98 -1.56 -28.53 16 16 C -0.33 -19.21 10.16 84.04 0.85 -18.36 16 17 H 0.06 4.23 7.39 -2.91 -0.02 4.21 16 18 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 19 N -0.92 -54.66 13.96 21.66 0.30 -54.36 16 20 Si 0.96 38.29 27.74 68.60 1.90 40.19 16 21 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 22 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 23 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 24 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.17 7.08 -2.39 -0.02 1.15 16 26 H 0.10 1.46 8.09 -2.39 -0.02 1.44 16 27 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 28 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 29 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.41 6.55 9.06 -74.06 -0.67 5.87 16 31 H 0.41 14.86 7.42 -92.71 -0.69 14.17 16 32 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 33 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.39 15.37 5.76 -92.71 -0.53 14.84 16 35 H 0.28 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -78.36 312.54 0.25 -78.12 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -0.79 Total: 42.22 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 4.26 Total: 16.46 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -3.86 Total: -109.39 kcal Atomic # 8 Polarization: -66.32 SS G_CDS: -1.28 Total: -67.60 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.90 Total: 40.19 kcal Total: -78.36 0.25 -78.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599934547.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.783 kcal (2) G-P(sol) polarization free energy of solvation -78.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds