Wall clock time and date at job start Tue Mar 31 2020 00:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21493 * 119.99729 * 179.86495 * 13 12 11 15 15 C 1.48331 * 120.00026 * 359.86674 * 13 12 11 16 16 C 1.42266 * 126.93708 * 179.71166 * 15 13 12 17 17 C 1.35326 * 103.92165 * 179.88460 * 16 15 13 18 18 C 1.50699 * 126.66709 * 180.02562 * 17 16 15 19 19 C 1.52996 * 117.49910 * 188.94216 * 18 17 16 20 20 C 1.52996 * 117.50084 * 120.31842 * 18 17 16 21 21 O 1.34011 * 106.66358 * 0.36922 * 17 16 15 22 22 N 1.20905 * 111.85121 * 359.75050 * 21 17 16 23 23 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 26 26 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 27 27 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 28 28 H 1.08004 * 128.04051 * 0.02562 * 16 15 13 29 29 H 1.09008 * 115.54622 * 334.65151 * 18 17 16 30 30 H 1.08998 * 117.49581 * 0.02562 * 19 18 17 31 31 H 1.09003 * 117.49621 * 145.02058 * 19 18 17 32 32 H 1.08995 * 117.50147 * 214.98124 * 20 18 17 33 33 H 1.09005 * 117.49602 * 359.97438 * 20 18 17 34 34 H 1.09004 * 113.77444 * 221.15143 * 23 12 11 35 35 H 1.09004 * 113.87147 * 89.76886 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3858 -6.4945 0.9227 15 6 -0.2052 -5.7132 2.4514 16 6 -0.6897 -6.9483 2.9651 17 6 -1.6231 -6.5796 3.8728 18 6 -2.4609 -7.4971 4.7255 19 6 -3.5996 -6.8688 5.5314 20 6 -2.3376 -7.3587 6.2442 21 8 -1.6630 -5.2401 3.8606 22 7 -0.8751 -4.7736 3.0711 23 6 2.1610 -3.7398 0.0582 24 1 -0.4850 0.8400 0.0004 25 1 -0.3471 -1.8018 -1.0246 26 1 1.3268 -2.4870 2.2200 27 1 -0.3218 -2.8255 1.5318 28 1 -0.3822 -7.9478 2.6951 29 1 -2.6211 -8.4973 4.3227 30 1 -3.7430 -5.7918 5.4444 31 1 -4.5094 -7.4555 5.6587 32 1 -2.4171 -8.2675 6.8406 33 1 -1.6501 -6.6041 6.6266 34 1 2.2032 -4.2939 -0.8796 35 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619443950.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:02 Heat of formation + Delta-G solvation = 44.079388 kcal Electronic energy + Delta-G solvation = -21250.482777 eV Core-core repulsion = 17833.516855 eV Total energy + Delta-G solvation = -3416.965921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.94329 -39.47006 -37.62940 -37.38709 -34.00122 -33.74994 -32.22079 -31.48596 -28.75767 -25.82042 -25.27175 -24.35341 -23.39064 -22.66901 -21.99801 -19.77096 -18.24134 -17.64741 -17.51674 -17.19992 -16.42938 -15.81616 -15.46560 -15.01716 -14.65577 -14.45223 -14.13541 -13.51934 -13.20165 -12.72083 -12.56566 -12.40188 -12.04800 -11.89389 -11.59235 -11.57141 -11.36288 -11.09288 -10.99267 -10.75262 -10.50362 -10.29477 -10.25262 -9.92193 -9.33132 -9.20192 -8.77419 -8.45144 -7.92061 -6.38378 -4.48961 1.30455 1.77296 2.91422 3.14712 3.23183 3.26409 3.30612 3.52842 3.62152 4.15331 4.18589 4.24273 4.47214 4.60549 4.82780 4.90875 5.16563 5.26046 5.31412 5.40376 5.53455 5.59109 5.71932 5.78608 5.89825 5.99539 6.12743 6.34824 6.53341 6.59689 6.75704 7.08581 7.63554 7.81350 8.16274 8.29605 8.54293 8.60227 9.21955 9.41870 10.68758 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026055 B = 0.004238 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.409336 B = 6605.416172 C = 7283.596938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.237 3.763 10 O -0.572 6.572 11 C 0.085 3.915 12 N -0.616 5.616 13 C 0.605 3.395 14 O -0.550 6.550 15 C -0.012 4.012 16 C -0.177 4.177 17 C -0.016 4.016 18 C -0.083 4.083 19 C -0.167 4.167 20 C -0.163 4.163 21 O 0.119 5.881 22 N -0.317 5.317 23 C 0.115 3.885 24 H 0.273 0.727 25 H 0.392 0.608 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.178 0.822 29 H 0.139 0.861 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 -10.551 10.862 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.091 0.909 9 C 0.196 3.804 10 O -0.384 6.384 11 C -0.037 4.037 12 N -0.348 5.348 13 C 0.392 3.608 14 O -0.429 6.429 15 C -0.171 4.171 16 C -0.199 4.199 17 C -0.079 4.079 18 C -0.102 4.102 19 C -0.204 4.204 20 C -0.200 4.200 21 O 0.043 5.957 22 N -0.017 5.017 23 C -0.007 4.007 24 H 0.083 0.917 25 H 0.247 0.753 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.196 0.804 29 H 0.156 0.844 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.370 -10.315 10.396 15.599 hybrid contribution 0.224 0.573 0.114 0.626 sum -5.146 -9.742 10.510 15.227 Atomic orbital electron populations 1.69418 1.06182 1.28106 1.49873 1.25076 0.95025 0.99905 0.93039 0.86273 0.80073 0.82279 0.77857 1.19428 1.20618 1.20668 1.21503 0.93945 0.89809 1.52337 0.90912 1.19871 0.85667 0.91186 0.83707 1.86053 1.47081 1.49826 1.55454 1.24430 1.00847 0.76216 1.02203 1.50164 1.39420 1.04697 1.40568 1.16514 0.81195 0.82660 0.80421 1.90721 1.55879 1.39380 1.56929 1.23582 1.01441 0.90312 1.01798 1.22290 0.98724 1.00042 0.98850 1.23373 1.00074 0.83974 1.00439 1.20389 1.00665 0.97505 0.91628 1.23088 0.92767 1.02309 1.02195 1.23117 1.00845 1.03997 0.92087 1.84790 1.45504 1.19651 1.45716 1.74360 1.02513 1.21987 1.02870 1.23550 0.93266 0.92795 0.91042 0.91702 0.75289 0.89961 0.90555 0.80415 0.84367 0.87633 0.87609 0.87555 0.88103 0.90723 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.16 11.21 55.43 0.62 -22.54 16 2 C 0.07 1.83 5.40 -17.82 -0.10 1.73 16 3 Si 0.91 19.68 29.54 -169.99 -5.02 14.66 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -13.71 8.61 -34.44 -0.30 -14.01 16 8 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.24 5.87 1.40 -90.85 -0.13 5.74 16 10 O -0.57 -15.12 13.49 -35.23 -0.48 -15.59 16 11 C 0.09 1.98 7.34 -2.84 -0.02 1.96 16 12 N -0.62 -14.02 3.61 -179.05 -0.65 -14.67 16 13 C 0.61 13.48 8.08 -12.10 -0.10 13.38 16 14 O -0.55 -13.08 17.68 5.37 0.09 -12.99 16 15 C -0.01 -0.23 7.14 -82.53 -0.59 -0.82 16 16 C -0.18 -2.66 10.92 -39.07 -0.43 -3.08 16 17 C -0.02 -0.20 6.93 -35.35 -0.24 -0.45 16 18 C -0.08 -0.70 6.27 -91.78 -0.58 -1.28 16 19 C -0.17 -1.19 10.18 -26.73 -0.27 -1.46 16 20 C -0.16 -1.14 10.23 -26.73 -0.27 -1.41 16 21 O 0.12 1.85 10.96 17.26 0.19 2.04 16 22 N -0.32 -5.96 10.61 33.29 0.35 -5.61 16 23 C 0.11 2.57 8.23 -2.97 -0.02 2.55 16 24 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 25 H 0.39 10.44 6.61 45.56 0.30 10.74 16 26 H 0.08 1.86 8.09 -51.93 -0.42 1.44 16 27 H 0.08 1.85 7.55 -51.92 -0.39 1.46 16 28 H 0.18 2.28 8.06 -52.48 -0.42 1.86 16 29 H 0.14 0.89 8.14 -51.92 -0.42 0.46 16 30 H 0.11 0.85 8.01 -51.93 -0.42 0.43 16 31 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 35 H 0.09 1.84 8.09 -51.93 -0.42 1.42 16 LS Contribution 312.39 15.07 4.71 4.71 Total: -1.00 -29.84 312.39 -6.65 -36.50 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -3.43 Total: 10.64 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -3.04 Total: 2.86 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.33 Total: -42.82 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.19 Total: -26.54 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.84 -6.65 -36.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619443950.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.575 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds