Wall clock time and date at job start Tue Mar 31 2020 00:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21493 * 119.99729 * 179.86495 * 13 12 11 15 15 C 1.48331 * 120.00026 * 359.86674 * 13 12 11 16 16 C 1.42266 * 126.93708 * 179.71166 * 15 13 12 17 17 C 1.35326 * 103.92165 * 179.88460 * 16 15 13 18 18 C 1.50699 * 126.66709 * 180.02562 * 17 16 15 19 19 C 1.52996 * 117.49910 * 188.94216 * 18 17 16 20 20 C 1.52996 * 117.50084 * 120.31842 * 18 17 16 21 21 O 1.34011 * 106.66358 * 0.36922 * 17 16 15 22 22 N 1.20905 * 111.85121 * 359.75050 * 21 17 16 23 23 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 26 26 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 27 27 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 28 28 H 1.08004 * 128.04051 * 0.02562 * 16 15 13 29 29 H 1.09008 * 115.54622 * 334.65151 * 18 17 16 30 30 H 1.08998 * 117.49581 * 0.02562 * 19 18 17 31 31 H 1.09003 * 117.49621 * 145.02058 * 19 18 17 32 32 H 1.08995 * 117.50147 * 214.98124 * 20 18 17 33 33 H 1.09005 * 117.49602 * 359.97438 * 20 18 17 34 34 H 1.09004 * 113.77444 * 221.15143 * 23 12 11 35 35 H 1.09004 * 113.87147 * 89.76886 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3858 -6.4945 0.9227 15 6 -0.2052 -5.7132 2.4514 16 6 -0.6897 -6.9483 2.9651 17 6 -1.6231 -6.5796 3.8728 18 6 -2.4609 -7.4971 4.7255 19 6 -3.5996 -6.8688 5.5314 20 6 -2.3376 -7.3587 6.2442 21 8 -1.6630 -5.2401 3.8606 22 7 -0.8751 -4.7736 3.0711 23 6 2.1610 -3.7398 0.0582 24 1 -0.4850 0.8400 0.0004 25 1 -0.3471 -1.8018 -1.0246 26 1 1.3268 -2.4870 2.2200 27 1 -0.3218 -2.8255 1.5318 28 1 -0.3822 -7.9478 2.6951 29 1 -2.6211 -8.4973 4.3227 30 1 -3.7430 -5.7918 5.4444 31 1 -4.5094 -7.4555 5.6587 32 1 -2.4171 -8.2675 6.8406 33 1 -1.6501 -6.6041 6.6266 34 1 2.2032 -4.2939 -0.8796 35 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619443950.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:01 Heat of formation + Delta-G solvation = 23.731445 kcal Electronic energy + Delta-G solvation = -21251.365130 eV Core-core repulsion = 17833.516855 eV Total energy + Delta-G solvation = -3417.848274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.26122 -41.28521 -39.21558 -38.28467 -35.93986 -35.11320 -34.20726 -32.68543 -30.57814 -27.64565 -27.13997 -25.63215 -24.57473 -23.31628 -23.19708 -21.51732 -19.89188 -19.23151 -18.97486 -18.51368 -17.97727 -17.33872 -16.83300 -16.61870 -16.44732 -15.97110 -15.42708 -15.05816 -14.56597 -14.49128 -14.26944 -13.88765 -13.48528 -13.40386 -12.97178 -12.82778 -12.63905 -12.38380 -12.29128 -12.24889 -12.17498 -11.72591 -11.63119 -11.36918 -11.20343 -10.71391 -10.38845 -10.22594 -9.77693 -8.30523 -6.48600 -0.02009 0.53740 1.44052 1.47384 1.56916 1.60338 1.91448 1.96033 2.38093 2.72671 2.90544 2.93115 3.22191 3.58898 3.71662 3.86604 3.91266 4.03775 4.09844 4.28819 4.33827 4.44956 4.50476 4.66167 4.75913 4.83152 4.83480 4.86610 5.02383 5.13919 5.15022 5.27627 5.68178 5.85345 6.50555 6.58042 6.72808 7.02819 7.24467 7.35704 8.76530 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026055 B = 0.004238 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.409336 B = 6605.416172 C = 7283.596938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.031 3.969 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.220 3.780 10 O -0.585 6.585 11 C 0.102 3.898 12 N -0.622 5.622 13 C 0.601 3.399 14 O -0.571 6.571 15 C -0.045 4.045 16 C -0.184 4.184 17 C 0.009 3.991 18 C -0.098 4.098 19 C -0.162 4.162 20 C -0.152 4.152 21 O 0.128 5.872 22 N -0.346 5.346 23 C 0.117 3.883 24 H 0.276 0.724 25 H 0.388 0.612 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.198 0.802 29 H 0.167 0.833 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.310 -11.354 12.479 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.170 4.170 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.595 4.595 8 H 0.095 0.905 9 C 0.179 3.821 10 O -0.397 6.397 11 C -0.021 4.021 12 N -0.355 5.355 13 C 0.389 3.611 14 O -0.452 6.452 15 C -0.202 4.202 16 C -0.207 4.207 17 C -0.055 4.055 18 C -0.117 4.117 19 C -0.199 4.199 20 C -0.189 4.189 21 O 0.050 5.950 22 N -0.044 5.044 23 C -0.004 4.004 24 H 0.086 0.914 25 H 0.242 0.758 26 H 0.104 0.896 27 H 0.079 0.921 28 H 0.215 0.785 29 H 0.184 0.816 30 H 0.111 0.889 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.860 -11.121 12.005 17.382 hybrid contribution 0.284 0.761 -0.318 0.872 sum -5.576 -10.360 11.687 16.584 Atomic orbital electron populations 1.69493 1.07317 1.28982 1.49991 1.25818 0.95776 1.02881 0.92479 0.85269 0.78988 0.78245 0.77698 1.18877 1.20552 1.20324 1.21733 0.94290 0.90439 1.53004 0.90479 1.20133 0.85848 0.92181 0.83944 1.86039 1.47532 1.49694 1.56410 1.24155 0.99786 0.76598 1.01550 1.50188 1.39641 1.04862 1.40769 1.16923 0.81481 0.82005 0.80649 1.90685 1.56855 1.39701 1.57942 1.23437 1.01995 0.92397 1.02414 1.22530 0.99232 0.99601 0.99339 1.24144 0.99001 0.82920 0.99386 1.20760 1.01145 0.97664 0.92093 1.23212 0.93627 1.01979 1.01060 1.23239 1.00162 1.04814 0.90715 1.84744 1.44378 1.21329 1.44591 1.74352 1.03409 1.22867 1.03807 1.23585 0.93897 0.91697 0.91256 0.91420 0.75814 0.89587 0.92094 0.78463 0.81570 0.88933 0.85032 0.84791 0.89230 0.91084 0.86998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.78 11.21 21.45 0.24 -47.54 16 2 C 0.03 1.57 5.40 84.65 0.46 2.03 16 3 Si 0.97 40.00 29.54 68.60 2.03 42.03 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.56 -28.44 8.61 25.60 0.22 -28.22 16 8 H 0.08 3.78 7.81 -2.91 -0.02 3.75 16 9 C 0.22 11.07 1.40 -10.88 -0.02 11.05 16 10 O -0.59 -31.73 13.49 -148.98 -2.01 -33.74 16 11 C 0.10 4.83 7.34 86.44 0.63 5.47 16 12 N -0.62 -28.87 3.61 -842.53 -3.04 -31.91 16 13 C 0.60 27.25 8.08 86.93 0.70 27.95 16 14 O -0.57 -27.53 17.68 -3.69 -0.07 -27.59 16 15 C -0.05 -1.75 7.14 42.96 0.31 -1.45 16 16 C -0.18 -5.37 10.92 22.60 0.25 -5.12 16 17 C 0.01 0.21 6.93 25.01 0.17 0.38 16 18 C -0.10 -1.35 6.27 -11.54 -0.07 -1.42 16 19 C -0.16 -1.80 10.18 30.59 0.31 -1.48 16 20 C -0.15 -1.61 10.23 30.59 0.31 -1.29 16 21 O 0.13 3.91 10.96 71.93 0.79 4.70 16 22 N -0.35 -13.15 10.61 -49.52 -0.53 -13.68 16 23 C 0.12 5.30 8.23 86.49 0.71 6.01 16 24 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 25 H 0.39 21.28 6.61 -74.06 -0.49 20.79 16 26 H 0.09 3.96 8.09 -2.39 -0.02 3.94 16 27 H 0.06 3.06 7.55 -2.38 -0.02 3.04 16 28 H 0.20 4.78 8.06 -2.91 -0.02 4.75 16 29 H 0.17 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.09 1.30 8.01 -2.39 -0.02 1.28 16 31 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.11 4.52 8.09 -2.39 -0.02 4.50 16 Total: -1.00 -64.85 312.39 2.04 -62.81 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.64 Total: 31.03 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 3.99 Total: 13.90 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -3.33 Total: -93.13 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -1.29 Total: -56.63 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -64.85 2.04 -62.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619443950.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.539 kcal (2) G-P(sol) polarization free energy of solvation -64.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds