Wall clock time and date at job start Tue Mar 31 2020 00:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46890 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99537 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46946 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.46980 * 64.99979 * 12 11 10 14 14 C 1.47854 * 111.00001 * 290.84461 * 13 12 11 15 15 C 1.54907 * 104.79070 * 213.63794 * 14 13 12 16 16 C 1.55139 * 101.65724 * 37.06996 * 15 14 13 17 17 H 1.09000 * 110.85893 * 82.79725 * 16 15 14 18 18 S 1.81399 * 110.70304 * 205.96506 * 16 15 14 19 19 N 1.65596 * 104.44962 * 298.59348 * 18 16 15 20 20 O 1.42090 * 110.54625 * 50.22353 * 18 16 15 21 21 O 1.42106 * 110.54001 * 186.97387 * 18 16 15 22 22 C 1.47442 * 110.99751 * 169.99810 * 13 12 11 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 25 25 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 26 26 H 1.08996 * 109.47036 * 299.99654 * 11 10 9 27 27 H 1.08997 * 109.47173 * 60.00425 * 11 10 9 28 28 H 1.08993 * 109.47222 * 184.99598 * 12 11 10 29 29 H 1.08994 * 109.46908 * 305.00301 * 12 11 10 30 30 H 1.08999 * 110.36996 * 332.46422 * 14 13 12 31 31 H 1.08998 * 110.37234 * 94.80838 * 14 13 12 32 32 H 1.08998 * 110.98722 * 278.97489 * 15 14 13 33 33 H 1.09002 * 111.02062 * 155.17847 * 15 14 13 34 34 H 0.97003 * 120.00007 * 0.02562 * 19 18 16 35 35 H 0.97003 * 119.99967 * 179.97438 * 19 18 16 36 36 H 1.08997 * 109.88731 * 242.65732 * 22 13 12 37 37 H 1.08992 * 109.88929 * 3.69484 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5853 -0.0005 11 6 1.5652 -4.8754 -0.0011 12 6 2.6482 -5.9562 -0.0017 13 7 3.4084 -5.8884 1.2536 14 6 4.2295 -4.6601 1.3100 15 6 5.5037 -5.0716 2.0889 16 6 5.7338 -6.5163 1.5725 17 1 6.2624 -6.5082 0.6193 18 16 6.6413 -7.4985 2.7982 19 7 8.0898 -6.7138 2.9662 20 8 6.0318 -7.3869 4.0769 21 8 6.9902 -8.7671 2.2612 22 6 4.2985 -7.0551 1.3959 23 1 -0.4849 -0.8401 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 0.9448 -4.9827 0.8886 27 1 0.9454 -4.9822 -0.8914 28 1 2.1823 -6.9374 -0.0916 29 1 3.3217 -5.7952 -0.8434 30 1 4.4894 -4.3308 0.3040 31 1 3.6971 -3.8720 1.8425 32 1 5.3232 -5.0653 3.1639 33 1 6.3441 -4.4267 1.8324 34 1 8.2692 -5.9114 2.4514 35 1 8.7585 -7.0560 3.5799 36 1 4.0104 -7.6366 2.2717 37 1 4.2406 -7.6769 0.5026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:29 Heat of formation + Delta-G solvation = -119.268034 kcal Electronic energy + Delta-G solvation = -20192.338450 eV Core-core repulsion = 16903.733204 eV Total energy + Delta-G solvation = -3288.605246 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.21687 -37.24242 -36.75306 -36.15838 -33.60375 -33.27190 -32.39763 -29.24406 -28.42338 -26.28838 -22.76285 -22.50267 -21.91975 -20.76141 -19.58643 -18.11055 -17.58366 -17.02720 -16.48052 -16.20913 -15.87798 -15.57343 -14.92660 -14.21161 -13.96244 -13.75087 -13.72017 -13.15487 -12.89939 -12.47256 -12.35308 -12.29070 -12.17049 -12.05165 -11.94634 -11.39953 -11.38926 -11.20295 -10.96558 -10.73998 -10.72297 -10.62064 -10.20617 -10.14669 -8.89777 -8.67955 -8.34278 -8.27805 -6.50536 -4.19816 -0.02805 2.56113 3.33289 3.38470 3.42338 3.58368 3.75937 3.83677 4.17192 4.38561 4.51128 4.63574 4.74330 5.10333 5.12610 5.23220 5.27538 5.32147 5.44835 5.54003 5.56762 5.69972 5.86966 5.94275 6.03592 6.20629 6.41459 6.72473 6.73649 6.95045 7.05255 7.10720 7.83169 8.13078 8.57645 8.75883 9.51133 10.89756 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.003783 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.100976 B = 7400.115400 C = 8123.306955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.081 2.919 4 H -0.286 1.286 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.596 4.596 8 H 0.059 0.941 9 C 0.187 3.813 10 O -0.386 6.386 11 C 0.062 3.938 12 C 0.053 3.947 13 N -0.518 5.518 14 C 0.065 3.935 15 C -0.115 4.115 16 C -0.609 4.609 17 H 0.142 0.858 18 S 2.623 3.377 19 N -1.251 6.251 20 O -0.955 6.955 21 O -0.968 6.968 22 C 0.069 3.931 23 H 0.268 0.732 24 H -0.004 1.004 25 H -0.007 1.007 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.413 0.587 35 H 0.419 0.581 36 H 0.082 0.918 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.032 -13.750 2.717 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.186 4.186 3 Si 0.908 3.092 4 H -0.212 1.212 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.634 4.634 8 H 0.078 0.922 9 C 0.112 3.888 10 O -0.305 6.305 11 C -0.016 4.016 12 C -0.075 4.075 13 N -0.243 5.243 14 C -0.062 4.062 15 C -0.154 4.154 16 C -0.720 4.720 17 H 0.160 0.840 18 S 2.715 3.285 19 N -0.924 5.924 20 O -0.944 6.944 21 O -0.957 6.957 22 C -0.061 4.061 23 H 0.078 0.922 24 H 0.014 0.986 25 H 0.011 0.989 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.239 0.761 35 H 0.248 0.752 36 H 0.100 0.900 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.211 -12.994 3.552 18.868 hybrid contribution 0.746 -1.098 -1.204 1.792 sum 13.957 -14.093 2.348 19.973 Atomic orbital electron populations 1.70767 1.06882 1.30525 1.46502 1.25916 0.96412 1.02687 0.93611 0.83381 0.74525 0.74390 0.76916 1.21213 1.20858 1.21324 1.21889 0.95281 0.90400 1.55826 0.92230 1.20265 0.89426 0.84991 0.94100 1.87868 1.34786 1.12773 1.95108 1.22292 0.94406 0.85318 0.99590 1.22416 0.96325 0.98563 0.90189 1.63629 1.24322 1.01329 1.34998 1.23020 0.90485 0.92397 1.00319 1.22776 1.00618 0.89963 1.02079 1.31644 1.10936 1.11801 1.17636 0.83969 1.04561 0.73964 0.74248 0.75769 1.53095 1.36660 1.43604 1.59058 1.93623 1.76799 1.86166 1.37831 1.93603 1.81878 1.39314 1.80921 1.22524 0.85892 0.94894 1.02744 0.92212 0.98647 0.98939 0.93365 0.94042 0.89969 0.93851 0.91909 0.87926 0.88739 0.89230 0.76055 0.75185 0.90033 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.57 13.65 55.43 0.76 -26.82 16 2 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 3 Si 1.08 24.90 29.90 -169.99 -5.08 19.82 16 4 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.60 -17.11 9.43 -34.44 -0.32 -17.44 16 8 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 9 C 0.19 4.93 5.00 36.01 0.18 5.11 16 10 O -0.39 -8.70 7.67 -35.23 -0.27 -8.97 16 11 C 0.06 1.10 6.23 37.16 0.23 1.33 16 12 C 0.05 0.75 5.13 -3.82 -0.02 0.73 16 13 N -0.52 -7.42 5.16 -231.24 -1.19 -8.62 16 14 C 0.07 0.97 5.07 -2.29 -0.01 0.95 16 15 C -0.12 -1.20 6.50 -24.59 -0.16 -1.36 16 16 C -0.61 -5.55 3.59 -24.90 -0.09 -5.64 16 17 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 18 S 2.62 25.10 5.31 -107.50 -0.57 24.53 16 19 N -1.25 -7.58 9.39 60.35 0.57 -7.01 16 20 O -0.96 -12.75 17.68 -57.54 -1.02 -13.77 16 21 O -0.97 -12.32 18.10 -57.54 -1.04 -13.37 16 22 C 0.07 0.78 6.48 -2.83 -0.02 0.76 16 23 H 0.27 8.07 7.22 -40.82 -0.29 7.77 16 24 H 0.00 -0.11 8.01 -51.93 -0.42 -0.53 16 25 H -0.01 -0.19 8.01 -51.93 -0.42 -0.61 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.95 8.03 -51.93 -0.42 0.53 16 29 H 0.04 0.61 7.85 -51.93 -0.41 0.20 16 30 H 0.06 0.99 7.21 -51.93 -0.37 0.62 16 31 H 0.10 1.82 7.60 -51.93 -0.39 1.43 16 32 H 0.09 1.02 7.68 -51.93 -0.40 0.62 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.41 1.48 8.83 -34.47 -0.30 1.17 16 35 H 0.42 2.07 8.96 -34.47 -0.31 1.76 16 36 H 0.08 0.89 7.78 -51.93 -0.40 0.48 16 37 H 0.07 0.69 7.54 -51.93 -0.39 0.30 16 LS Contribution 316.21 15.07 4.77 4.77 Total: -1.00 -37.04 316.21 -8.82 -45.86 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.42 Total: -1.27 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -0.31 Total: -15.15 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.13 Total: -42.45 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -2.33 Total: -36.11 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.82 kcal Atomic # 16 Polarization: 25.10 SS G_CDS: -0.57 Total: 24.53 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -37.04 -8.82 -45.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.404 kcal (2) G-P(sol) polarization free energy of solvation -37.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds