Wall clock time and date at job start Tue Mar 31 2020 00:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46890 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99537 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46946 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.46980 * 64.99979 * 12 11 10 14 14 C 1.47854 * 111.00001 * 290.84461 * 13 12 11 15 15 C 1.54907 * 104.79070 * 213.63794 * 14 13 12 16 16 C 1.55139 * 101.65724 * 37.06996 * 15 14 13 17 17 H 1.09000 * 110.85893 * 82.79725 * 16 15 14 18 18 S 1.81399 * 110.70304 * 205.96506 * 16 15 14 19 19 N 1.65596 * 104.44962 * 298.59348 * 18 16 15 20 20 O 1.42090 * 110.54625 * 50.22353 * 18 16 15 21 21 O 1.42106 * 110.54001 * 186.97387 * 18 16 15 22 22 C 1.47442 * 110.99751 * 169.99810 * 13 12 11 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 25 25 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 26 26 H 1.08996 * 109.47036 * 299.99654 * 11 10 9 27 27 H 1.08997 * 109.47173 * 60.00425 * 11 10 9 28 28 H 1.08993 * 109.47222 * 184.99598 * 12 11 10 29 29 H 1.08994 * 109.46908 * 305.00301 * 12 11 10 30 30 H 1.08999 * 110.36996 * 332.46422 * 14 13 12 31 31 H 1.08998 * 110.37234 * 94.80838 * 14 13 12 32 32 H 1.08998 * 110.98722 * 278.97489 * 15 14 13 33 33 H 1.09002 * 111.02062 * 155.17847 * 15 14 13 34 34 H 0.97003 * 120.00007 * 0.02562 * 19 18 16 35 35 H 0.97003 * 119.99967 * 179.97438 * 19 18 16 36 36 H 1.08997 * 109.88731 * 242.65732 * 22 13 12 37 37 H 1.08992 * 109.88929 * 3.69484 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5853 -0.0005 11 6 1.5652 -4.8754 -0.0011 12 6 2.6482 -5.9562 -0.0017 13 7 3.4084 -5.8884 1.2536 14 6 4.2295 -4.6601 1.3100 15 6 5.5037 -5.0716 2.0889 16 6 5.7338 -6.5163 1.5725 17 1 6.2624 -6.5082 0.6193 18 16 6.6413 -7.4985 2.7982 19 7 8.0898 -6.7138 2.9662 20 8 6.0318 -7.3869 4.0769 21 8 6.9902 -8.7671 2.2612 22 6 4.2985 -7.0551 1.3959 23 1 -0.4849 -0.8401 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 0.9448 -4.9827 0.8886 27 1 0.9454 -4.9822 -0.8914 28 1 2.1823 -6.9374 -0.0916 29 1 3.3217 -5.7952 -0.8434 30 1 4.4894 -4.3308 0.3040 31 1 3.6971 -3.8720 1.8425 32 1 5.3232 -5.0653 3.1639 33 1 6.3441 -4.4267 1.8324 34 1 8.2692 -5.9114 2.4514 35 1 8.7585 -7.0560 3.5799 36 1 4.0104 -7.6366 2.2717 37 1 4.2406 -7.6769 0.5026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:28 Heat of formation + Delta-G solvation = -151.880819 kcal Electronic energy + Delta-G solvation = -20193.752646 eV Core-core repulsion = 16903.733204 eV Total energy + Delta-G solvation = -3290.019442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29282 -38.49107 -38.09886 -37.05181 -35.32263 -34.19342 -33.63410 -30.22278 -29.86030 -28.21046 -24.77327 -23.82490 -22.86496 -21.90249 -20.33056 -19.16818 -18.85628 -18.27387 -17.60302 -17.42468 -17.16004 -16.56365 -16.15014 -15.72259 -15.54088 -15.12770 -14.99791 -14.48335 -14.14520 -14.01896 -13.48730 -13.23446 -13.20074 -13.10107 -13.06999 -12.91175 -12.81662 -12.50507 -12.41832 -12.06449 -11.91419 -11.75403 -11.50108 -11.28255 -10.85122 -10.81857 -10.32821 -9.41937 -8.81820 -6.53010 -0.80523 1.53374 1.62887 1.81744 1.88323 2.50131 2.57350 2.83243 2.96173 3.05338 3.06295 3.33661 3.64450 3.88608 4.06425 4.20958 4.24604 4.30824 4.40949 4.44859 4.55222 4.60156 4.67879 4.75382 4.81829 4.91355 5.02602 5.16096 5.28195 5.68536 5.88012 5.93257 5.98833 6.34458 6.36282 6.65059 7.28488 8.59262 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.003783 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.100976 B = 7400.115400 C = 8123.306955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.031 4.031 3 Si 1.130 2.870 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.616 4.616 8 H 0.058 0.942 9 C 0.197 3.803 10 O -0.390 6.390 11 C 0.052 3.948 12 C 0.060 3.940 13 N -0.539 5.539 14 C 0.063 3.937 15 C -0.111 4.111 16 C -0.594 4.594 17 H 0.175 0.825 18 S 2.647 3.353 19 N -1.237 6.237 20 O -0.996 6.996 21 O -0.998 6.998 22 C 0.057 3.943 23 H 0.255 0.745 24 H -0.024 1.024 25 H -0.021 1.021 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.115 0.885 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.427 0.573 35 H 0.426 0.574 36 H 0.082 0.918 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.282 -13.970 2.221 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.228 4.228 3 Si 0.949 3.051 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.654 4.654 8 H 0.076 0.924 9 C 0.122 3.878 10 O -0.310 6.310 11 C -0.025 4.025 12 C -0.067 4.067 13 N -0.264 5.264 14 C -0.065 4.065 15 C -0.150 4.150 16 C -0.705 4.705 17 H 0.193 0.807 18 S 2.740 3.260 19 N -0.915 5.915 20 O -0.985 6.985 21 O -0.988 6.988 22 C -0.072 4.072 23 H 0.064 0.936 24 H -0.006 1.006 25 H -0.004 1.004 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.141 0.859 34 H 0.257 0.743 35 H 0.258 0.742 36 H 0.100 0.900 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.477 -13.260 3.068 20.610 hybrid contribution 0.014 -1.118 -1.051 1.535 sum 15.492 -14.378 2.016 21.232 Atomic orbital electron populations 1.70899 1.07927 1.29829 1.48220 1.27587 0.96414 1.06675 0.92099 0.82796 0.74092 0.70118 0.78109 1.19413 1.20426 1.19101 1.22247 0.95437 0.91743 1.55949 0.92402 1.19912 0.89351 0.86135 0.92403 1.87853 1.34255 1.13815 1.95062 1.22624 0.96141 0.84126 0.99632 1.22408 0.95487 0.98352 0.90499 1.63501 1.25542 1.02207 1.35113 1.22849 0.92094 0.91932 0.99639 1.22768 0.99671 0.91348 1.01223 1.31534 1.09965 1.10150 1.18849 0.80750 1.03588 0.74037 0.73680 0.74728 1.52710 1.35490 1.43962 1.59361 1.93579 1.78014 1.86726 1.40228 1.93571 1.82464 1.41491 1.81227 1.22668 0.86536 0.93991 1.04029 0.93587 1.00629 1.00379 0.94186 0.93116 0.86696 0.93276 0.93144 0.92071 0.89302 0.85852 0.74295 0.74213 0.90001 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.35 13.65 21.45 0.29 -57.06 16 2 C -0.03 -1.76 5.46 84.65 0.46 -1.29 16 3 Si 1.13 49.26 29.90 68.60 2.05 51.32 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.62 -35.99 9.43 25.60 0.24 -35.75 16 8 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 9 C 0.20 10.80 5.00 71.24 0.36 11.16 16 10 O -0.39 -18.04 7.67 -148.98 -1.14 -19.18 16 11 C 0.05 1.86 6.23 71.98 0.45 2.31 16 12 C 0.06 1.63 5.13 86.30 0.44 2.07 16 13 N -0.54 -14.90 5.16 -885.51 -4.57 -19.47 16 14 C 0.06 1.84 5.07 86.77 0.44 2.28 16 15 C -0.11 -2.11 6.50 31.98 0.21 -1.90 16 16 C -0.59 -9.15 3.59 31.78 0.11 -9.04 16 17 H 0.17 1.60 8.14 -2.39 -0.02 1.58 16 18 S 2.65 45.34 5.31 -56.49 -0.30 45.04 16 19 N -1.24 -11.59 9.39 37.02 0.35 -11.24 16 20 O -1.00 -25.65 17.68 -127.65 -2.26 -27.90 16 21 O -1.00 -23.53 18.10 -127.65 -2.31 -25.85 16 22 C 0.06 1.15 6.48 86.65 0.56 1.71 16 23 H 0.25 15.90 7.22 -92.71 -0.67 15.23 16 24 H -0.02 -1.38 8.01 -2.39 -0.02 -1.40 16 25 H -0.02 -1.21 8.01 -2.39 -0.02 -1.23 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.12 2.34 8.03 -2.39 -0.02 2.32 16 29 H 0.05 1.28 7.85 -2.39 -0.02 1.26 16 30 H 0.05 1.57 7.21 -2.39 -0.02 1.55 16 31 H 0.06 2.27 7.60 -2.39 -0.02 2.25 16 32 H 0.09 1.81 7.68 -2.39 -0.02 1.79 16 33 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.43 1.55 8.83 -96.74 -0.85 0.70 16 35 H 0.43 3.16 8.96 -96.74 -0.87 2.29 16 36 H 0.08 1.65 7.78 -2.39 -0.02 1.64 16 37 H 0.10 1.51 7.54 -2.39 -0.02 1.49 16 Total: -1.00 -81.66 316.21 -5.15 -86.81 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -0.54 Total: 5.98 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 3.28 Total: -28.44 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -3.93 Total: -87.77 kcal Atomic # 8 Polarization: -67.22 SS G_CDS: -5.71 Total: -72.93 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.05 Total: 51.32 kcal Atomic # 16 Polarization: 45.34 SS G_CDS: -0.30 Total: 45.04 kcal Total: -81.66 -5.15 -86.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.070 kcal (2) G-P(sol) polarization free energy of solvation -81.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds