Wall clock time and date at job start Tue Mar 31 2020 00:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48497 * 109.47452 * 239.99971 * 3 2 1 5 5 H 1.48498 * 109.46993 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47370 * 119.99898 * 3 2 1 7 7 C 1.37877 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00341 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00004 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47362 * 179.97438 * 9 7 2 11 11 C 1.42903 * 114.00333 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47337 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.46903 * 64.99747 * 12 11 10 14 14 C 1.47887 * 111.01481 * 69.12508 * 13 12 11 15 15 C 1.54908 * 104.77420 * 146.33028 * 14 13 12 16 16 C 1.55138 * 101.68619 * 322.97931 * 15 14 13 17 17 H 1.09003 * 110.70516 * 277.25131 * 16 15 14 18 18 S 1.81398 * 110.70896 * 154.19478 * 16 15 14 19 19 N 1.65610 * 104.44821 * 61.44823 * 18 16 15 20 20 O 1.42095 * 110.54511 * 173.07356 * 18 16 15 21 21 O 1.42104 * 110.54200 * 309.83187 * 18 16 15 22 22 C 1.47444 * 110.99660 * 190.00196 * 13 12 11 23 23 H 0.96999 * 120.00292 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47628 * 59.99596 * 9 7 2 25 25 H 1.09003 * 109.47309 * 299.99162 * 9 7 2 26 26 H 1.09001 * 109.47101 * 59.99470 * 11 10 9 27 27 H 1.09001 * 109.46918 * 299.99731 * 11 10 9 28 28 H 1.09005 * 109.47195 * 305.00192 * 12 11 10 29 29 H 1.08994 * 109.47178 * 184.99473 * 12 11 10 30 30 H 1.08993 * 110.35657 * 27.51601 * 14 13 12 31 31 H 1.09005 * 110.40536 * 265.16436 * 14 13 12 32 32 H 1.09002 * 110.99023 * 204.86730 * 15 14 13 33 33 H 1.08995 * 110.99233 * 81.08878 * 15 14 13 34 34 H 0.96998 * 119.99271 * 150.00136 * 19 18 16 35 35 H 0.96995 * 119.99679 * 330.00356 * 19 18 16 36 36 H 1.08998 * 109.89066 * 117.34098 * 22 13 12 37 37 H 1.09001 * 109.89084 * 356.14657 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8755 0.0000 12 6 2.6481 -5.9562 -0.0006 13 7 3.4083 -5.8884 1.2546 14 6 2.5776 -6.3150 2.4014 15 6 3.5669 -7.0130 3.3677 16 6 4.5162 -7.7368 2.3769 17 1 4.0865 -8.6853 2.0547 18 16 6.1481 -7.9960 3.1253 19 7 5.8518 -8.9596 4.4391 20 8 6.9629 -8.7965 2.2801 21 8 6.6390 -6.7846 3.6829 22 6 4.6044 -6.7484 1.1950 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5572 -0.8896 25 1 0.6242 -2.5568 0.8904 26 1 0.9452 -4.9822 -0.8902 27 1 0.9447 -4.9828 0.8897 28 1 3.3216 -5.7953 -0.8424 29 1 2.1821 -6.9374 -0.0906 30 1 1.8095 -7.0153 2.0735 31 1 2.1226 -5.4498 2.8838 32 1 3.0494 -7.7289 4.0063 33 1 4.1106 -6.2815 3.9655 34 1 6.5295 -9.5816 4.7469 35 1 5.0007 -8.9020 4.9007 36 1 5.5038 -6.1396 1.2873 37 1 4.6203 -7.2969 0.2532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:31 Heat of formation + Delta-G solvation = -113.232769 kcal Electronic energy + Delta-G solvation = -19921.697154 eV Core-core repulsion = 16633.353617 eV Total energy + Delta-G solvation = -3288.343537 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.26581 -37.28135 -36.53813 -36.17746 -33.63894 -33.04952 -32.30858 -29.43007 -28.44725 -26.61270 -22.83482 -22.25321 -22.11658 -20.64467 -19.60702 -18.20898 -17.58990 -16.59336 -16.42835 -16.18826 -15.68115 -15.55924 -14.90936 -14.43931 -14.15442 -13.88258 -13.70255 -13.20226 -12.71050 -12.52357 -12.40141 -12.31006 -12.18608 -12.06249 -11.79195 -11.62900 -11.37735 -11.06204 -10.97828 -10.79791 -10.72166 -10.58933 -10.40150 -9.96842 -9.06266 -8.76766 -8.29100 -8.10831 -6.06522 -4.07442 -0.05260 2.54050 3.33911 3.36830 3.38686 3.43607 3.69904 3.76590 4.11840 4.36087 4.40304 4.59355 4.83483 4.96638 5.04579 5.14064 5.27155 5.30071 5.37757 5.55352 5.56795 5.62964 5.69671 5.89209 5.91063 6.06043 6.23631 6.68381 6.89887 7.03827 7.14353 7.46844 7.85374 8.20928 8.64996 9.06960 9.57386 11.05134 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.003441 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.626173 B = 8134.601607 C = 8586.664042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.380 6.380 11 C 0.068 3.932 12 C 0.053 3.947 13 N -0.505 5.505 14 C 0.050 3.950 15 C -0.114 4.114 16 C -0.614 4.614 17 H 0.142 0.858 18 S 2.625 3.375 19 N -1.251 6.251 20 O -0.965 6.965 21 O -0.948 6.948 22 C 0.071 3.929 23 H 0.264 0.736 24 H 0.002 0.998 25 H 0.003 0.997 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.419 0.581 35 H 0.413 0.587 36 H 0.085 0.915 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.060 -21.488 7.894 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.299 6.299 11 C -0.010 4.010 12 C -0.075 4.075 13 N -0.230 5.230 14 C -0.078 4.078 15 C -0.152 4.152 16 C -0.725 4.725 17 H 0.160 0.840 18 S 2.715 3.285 19 N -0.923 5.923 20 O -0.954 6.954 21 O -0.937 6.937 22 C -0.059 4.059 23 H 0.073 0.927 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.248 0.752 35 H 0.239 0.761 36 H 0.103 0.897 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.160 -20.362 7.491 22.847 hybrid contribution -1.115 -0.463 0.134 1.214 sum 6.045 -20.825 7.624 22.986 Atomic orbital electron populations 1.69954 1.06117 1.27179 1.50848 1.24944 0.94961 0.99421 0.95215 0.86394 0.79290 0.81874 0.78905 1.20036 1.21253 1.19951 1.21039 0.94119 0.89344 1.50463 0.91501 1.20173 0.88819 0.83882 0.95073 1.87955 1.34673 1.12297 1.95014 1.22195 0.93616 0.86297 0.98915 1.22444 0.96542 0.96427 0.92073 1.63529 1.05885 1.50079 1.03471 1.23065 0.94608 0.99140 0.90961 1.22687 0.96769 0.99278 0.96501 1.31766 1.22564 1.08676 1.09460 0.84003 1.04592 0.75728 0.74107 0.74088 1.53227 1.28173 1.60480 1.50441 1.93599 1.64973 1.68974 1.67896 1.93654 1.76434 1.47315 1.76313 1.22554 0.97091 0.91532 0.94734 0.92691 0.98037 0.97922 0.94193 0.94619 0.89750 0.93955 0.93166 0.88755 0.89308 0.88359 0.75152 0.76097 0.89668 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.51 -15.35 9.43 -34.44 -0.32 -15.67 16 8 H 0.07 2.01 7.81 -52.48 -0.41 1.59 16 9 C 0.19 5.41 5.69 36.01 0.20 5.62 16 10 O -0.38 -9.28 10.27 -35.23 -0.36 -9.64 16 11 C 0.07 1.24 6.07 37.16 0.23 1.46 16 12 C 0.05 0.76 4.95 -3.82 -0.02 0.74 16 13 N -0.51 -7.27 5.11 -231.21 -1.18 -8.45 16 14 C 0.05 0.58 5.72 -2.27 -0.01 0.57 16 15 C -0.11 -0.93 6.20 -24.59 -0.15 -1.08 16 16 C -0.61 -4.97 3.67 -24.91 -0.09 -5.06 16 17 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 18 S 2.62 24.01 5.33 -107.50 -0.57 23.44 16 19 N -1.25 -6.43 9.35 60.35 0.56 -5.86 16 20 O -0.96 -11.92 18.10 -57.54 -1.04 -12.96 16 21 O -0.95 -12.77 17.68 -57.54 -1.02 -13.79 16 22 C 0.07 0.81 6.48 -2.83 -0.02 0.80 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 25 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.62 7.34 -51.93 -0.38 0.24 16 28 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 29 H 0.04 0.48 7.85 -51.93 -0.41 0.07 16 30 H 0.05 0.50 7.62 -51.93 -0.40 0.10 16 31 H 0.09 1.23 8.12 -51.93 -0.42 0.81 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.89 7.68 -51.93 -0.40 0.50 16 34 H 0.42 1.69 8.96 -34.47 -0.31 1.38 16 35 H 0.41 1.06 8.64 -34.47 -0.30 0.76 16 36 H 0.09 1.04 7.79 -51.93 -0.40 0.64 16 37 H 0.07 0.73 7.55 -51.93 -0.39 0.33 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -38.62 320.09 -8.84 -47.46 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -5.48 Total: -4.63 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.29 Total: -11.10 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.12 Total: -40.83 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -2.42 Total: -36.38 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 24.01 SS G_CDS: -0.57 Total: 23.44 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -38.62 -8.84 -47.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.770 kcal (2) G-P(sol) polarization free energy of solvation -38.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds