Wall clock time and date at job start Tue Mar 31 2020 00:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48497 * 109.47452 * 239.99971 * 3 2 1 5 5 H 1.48498 * 109.46993 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47370 * 119.99898 * 3 2 1 7 7 C 1.37877 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00341 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00004 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47362 * 179.97438 * 9 7 2 11 11 C 1.42903 * 114.00333 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47337 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.46903 * 64.99747 * 12 11 10 14 14 C 1.47887 * 111.01481 * 69.12508 * 13 12 11 15 15 C 1.54908 * 104.77420 * 146.33028 * 14 13 12 16 16 C 1.55138 * 101.68619 * 322.97931 * 15 14 13 17 17 H 1.09003 * 110.70516 * 277.25131 * 16 15 14 18 18 S 1.81398 * 110.70896 * 154.19478 * 16 15 14 19 19 N 1.65610 * 104.44821 * 61.44823 * 18 16 15 20 20 O 1.42095 * 110.54511 * 173.07356 * 18 16 15 21 21 O 1.42104 * 110.54200 * 309.83187 * 18 16 15 22 22 C 1.47444 * 110.99660 * 190.00196 * 13 12 11 23 23 H 0.96999 * 120.00292 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47628 * 59.99596 * 9 7 2 25 25 H 1.09003 * 109.47309 * 299.99162 * 9 7 2 26 26 H 1.09001 * 109.47101 * 59.99470 * 11 10 9 27 27 H 1.09001 * 109.46918 * 299.99731 * 11 10 9 28 28 H 1.09005 * 109.47195 * 305.00192 * 12 11 10 29 29 H 1.08994 * 109.47178 * 184.99473 * 12 11 10 30 30 H 1.08993 * 110.35657 * 27.51601 * 14 13 12 31 31 H 1.09005 * 110.40536 * 265.16436 * 14 13 12 32 32 H 1.09002 * 110.99023 * 204.86730 * 15 14 13 33 33 H 1.08995 * 110.99233 * 81.08878 * 15 14 13 34 34 H 0.96998 * 119.99271 * 150.00136 * 19 18 16 35 35 H 0.96995 * 119.99679 * 330.00356 * 19 18 16 36 36 H 1.08998 * 109.89066 * 117.34098 * 22 13 12 37 37 H 1.09001 * 109.89084 * 356.14657 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8755 0.0000 12 6 2.6481 -5.9562 -0.0006 13 7 3.4083 -5.8884 1.2546 14 6 2.5776 -6.3150 2.4014 15 6 3.5669 -7.0130 3.3677 16 6 4.5162 -7.7368 2.3769 17 1 4.0865 -8.6853 2.0547 18 16 6.1481 -7.9960 3.1253 19 7 5.8518 -8.9596 4.4391 20 8 6.9629 -8.7965 2.2801 21 8 6.6390 -6.7846 3.6829 22 6 4.6044 -6.7484 1.1950 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5572 -0.8896 25 1 0.6242 -2.5568 0.8904 26 1 0.9452 -4.9822 -0.8902 27 1 0.9447 -4.9828 0.8897 28 1 3.3216 -5.7953 -0.8424 29 1 2.1821 -6.9374 -0.0906 30 1 1.8095 -7.0153 2.0735 31 1 2.1226 -5.4498 2.8838 32 1 3.0494 -7.7289 4.0063 33 1 4.1106 -6.2815 3.9655 34 1 6.5295 -9.5816 4.7469 35 1 5.0007 -8.9020 4.9007 36 1 5.5038 -6.1396 1.2873 37 1 4.6203 -7.2969 0.2532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:31 Heat of formation + Delta-G solvation = -147.971920 kcal Electronic energy + Delta-G solvation = -19923.203556 eV Core-core repulsion = 16633.353617 eV Total energy + Delta-G solvation = -3289.849940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21572 -38.35116 -38.10566 -37.04500 -35.02004 -34.18601 -33.61307 -30.28140 -29.99394 -28.44874 -24.52096 -23.89922 -22.89508 -21.71403 -20.30943 -18.89277 -18.62485 -18.22312 -17.56102 -17.23806 -17.04090 -16.77519 -16.34870 -15.93415 -15.49679 -15.06876 -14.92862 -14.50442 -13.89748 -13.67546 -13.44761 -13.29116 -13.20119 -13.16393 -13.04264 -12.87359 -12.75468 -12.68250 -12.29078 -12.21387 -12.00025 -11.79132 -11.59148 -11.26445 -11.16361 -10.84655 -10.17657 -9.25662 -8.31602 -6.43370 -0.78223 1.39826 1.44694 1.53028 1.91111 2.35608 2.63017 2.87716 3.00874 3.02002 3.25052 3.34106 3.62945 3.88995 4.18873 4.19586 4.22405 4.34229 4.45441 4.54445 4.61061 4.68139 4.74788 4.81830 4.91699 4.96914 5.04349 5.19873 5.28511 5.55937 5.96791 5.97932 6.05903 6.39240 6.57757 6.87480 7.28980 8.80516 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.003441 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.626173 B = 8134.601607 C = 8586.664042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.211 3.789 10 O -0.399 6.399 11 C 0.057 3.943 12 C 0.061 3.939 13 N -0.545 5.545 14 C 0.043 3.957 15 C -0.111 4.111 16 C -0.592 4.592 17 H 0.183 0.817 18 S 2.641 3.359 19 N -1.232 6.232 20 O -0.999 6.999 21 O -0.999 6.999 22 C 0.058 3.942 23 H 0.271 0.729 24 H -0.016 1.016 25 H -0.017 1.017 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.427 0.573 35 H 0.428 0.572 36 H 0.066 0.934 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.959 -22.900 8.466 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.076 0.924 9 C 0.136 3.864 10 O -0.318 6.318 11 C -0.021 4.021 12 C -0.066 4.066 13 N -0.271 5.271 14 C -0.085 4.085 15 C -0.150 4.150 16 C -0.704 4.704 17 H 0.200 0.800 18 S 2.733 3.267 19 N -0.911 5.911 20 O -0.989 6.989 21 O -0.988 6.988 22 C -0.071 4.071 23 H 0.080 0.920 24 H 0.002 0.998 25 H 0.001 0.999 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.101 0.899 34 H 0.259 0.741 35 H 0.258 0.742 36 H 0.084 0.916 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.071 -21.808 8.084 24.309 hybrid contribution -1.162 -0.106 -0.034 1.167 sum 5.910 -21.913 8.050 24.081 Atomic orbital electron populations 1.70053 1.07670 1.28676 1.50593 1.25932 0.95968 1.03282 0.93917 0.85264 0.78137 0.76855 0.79329 1.19064 1.19750 1.19217 1.21370 0.94010 0.91079 1.52157 0.92367 1.19766 0.88596 0.84915 0.93170 1.87907 1.34823 1.14028 1.95070 1.22595 0.95491 0.84492 0.99492 1.22356 0.95516 0.96483 0.92286 1.63353 1.07221 1.52410 1.04077 1.23118 0.95648 0.98965 0.90775 1.22775 0.96077 0.99865 0.96256 1.31598 1.21280 1.09612 1.07893 0.79984 1.03751 0.75749 0.73076 0.74093 1.52758 1.29276 1.59713 1.49305 1.93555 1.66746 1.69433 1.69120 1.93601 1.78128 1.49779 1.77329 1.22587 0.95248 0.92018 0.97240 0.92030 0.99801 0.99899 0.93378 0.94134 0.90311 0.89875 0.90826 0.91443 0.84452 0.89859 0.74144 0.74234 0.91621 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.98 45.58 29.54 68.60 2.03 47.61 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.55 -33.78 9.43 25.60 0.24 -33.54 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 9 C 0.21 12.16 5.69 71.24 0.41 12.56 16 10 O -0.40 -20.07 10.27 -148.98 -1.53 -21.60 16 11 C 0.06 2.06 6.07 71.98 0.44 2.50 16 12 C 0.06 1.68 4.95 86.30 0.43 2.11 16 13 N -0.55 -15.24 5.11 -885.40 -4.52 -19.76 16 14 C 0.04 0.92 5.72 86.77 0.50 1.41 16 15 C -0.11 -1.53 6.20 31.98 0.20 -1.33 16 16 C -0.59 -7.91 3.67 31.77 0.12 -7.80 16 17 H 0.18 1.01 8.14 -2.39 -0.02 0.99 16 18 S 2.64 44.93 5.33 -56.49 -0.30 44.63 16 19 N -1.23 -9.49 9.35 37.02 0.35 -9.15 16 20 O -1.00 -23.71 18.10 -127.65 -2.31 -26.02 16 21 O -1.00 -27.16 17.68 -127.65 -2.26 -29.42 16 22 C 0.06 1.27 6.48 86.65 0.56 1.83 16 23 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 24 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 25 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.04 1.42 7.34 -2.39 -0.02 1.41 16 28 H 0.08 2.21 8.03 -2.38 -0.02 2.19 16 29 H 0.08 1.60 7.85 -2.39 -0.02 1.58 16 30 H 0.07 1.22 7.62 -2.39 -0.02 1.20 16 31 H 0.07 1.78 8.12 -2.38 -0.02 1.76 16 32 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 1.43 7.68 -2.39 -0.02 1.41 16 34 H 0.43 2.44 8.96 -96.75 -0.87 1.57 16 35 H 0.43 0.69 8.64 -96.75 -0.84 -0.15 16 36 H 0.07 1.65 7.79 -2.39 -0.02 1.63 16 37 H 0.09 1.63 7.55 -2.39 -0.02 1.61 16 Total: -1.00 -86.35 320.09 -5.54 -91.89 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -0.62 Total: -0.33 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 3.35 Total: -21.35 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -3.89 Total: -85.42 kcal Atomic # 8 Polarization: -70.93 SS G_CDS: -6.10 Total: -77.03 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: 44.93 SS G_CDS: -0.30 Total: 44.63 kcal Total: -86.35 -5.54 -91.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.077 kcal (2) G-P(sol) polarization free energy of solvation -86.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds