Wall clock time and date at job start Mon Mar 30 2020 23:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48503 * 109.46978 * 269.99961 * 3 2 1 5 5 H 1.48498 * 109.47362 * 29.99964 * 3 2 1 6 6 H 1.48495 * 109.47208 * 150.00002 * 3 2 1 7 7 C 1.37876 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99653 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00503 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47312 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99602 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00242 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99602 * 179.97438 * 11 10 9 14 14 O 1.42898 * 109.47014 * 179.97438 * 13 11 10 15 15 C 1.35656 * 117.00084 * 180.02562 * 14 13 11 16 16 C 1.38714 * 120.14894 * 359.97411 * 15 14 13 17 17 C 1.38051 * 120.08468 * 180.02562 * 16 15 14 18 18 C 1.38555 * 120.38906 * 0.02562 * 17 16 15 19 19 C 1.37786 * 120.30047 * 359.97438 * 18 17 16 20 20 C 1.39705 * 119.90585 * 0.02562 * 19 18 17 21 21 C 1.47544 * 120.19020 * 179.97438 * 20 19 18 22 22 N 1.34783 * 119.99517 * 359.97438 * 21 20 19 23 23 O 1.21581 * 119.99935 * 179.97438 * 21 20 19 24 24 H 0.97004 * 119.99784 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46875 * 59.99529 * 9 7 2 26 26 H 1.09001 * 109.46880 * 300.00585 * 9 7 2 27 27 H 0.96994 * 120.00170 * 359.97438 * 10 9 7 28 28 H 1.09003 * 109.47022 * 60.00137 * 13 11 10 29 29 H 1.09001 * 109.47568 * 299.99859 * 13 11 10 30 30 H 1.07996 * 119.95854 * 0.02699 * 16 15 14 31 31 H 1.07997 * 119.80544 * 180.27727 * 17 16 15 32 32 H 1.07998 * 119.84739 * 179.97438 * 18 17 16 33 33 H 1.07996 * 120.04310 * 180.02562 * 19 18 17 34 34 H 0.96998 * 120.00167 * 0.02562 * 22 21 20 35 35 H 0.97000 * 119.99219 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7536 -4.8834 0.0033 12 8 0.5612 -5.1049 0.0035 13 6 2.7329 -6.0288 0.0038 14 8 2.0184 -7.2663 0.0050 15 6 2.7571 -8.4041 0.0061 16 6 4.1426 -8.3351 0.0054 17 6 4.8931 -9.4938 0.0060 18 6 4.2710 -10.7319 0.0066 19 6 2.8959 -10.8189 0.0073 20 6 2.1243 -9.6543 0.0067 21 6 0.6513 -9.7402 0.0069 22 7 0.0466 -10.9448 0.0070 23 8 -0.0169 -8.7245 0.0069 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8919 27 1 3.1566 -3.4355 0.0022 28 1 3.3596 -5.9707 0.8937 29 1 3.3595 -5.9716 -0.8863 30 1 4.6347 -7.3738 0.0045 31 1 5.9714 -9.4349 0.0100 32 1 4.8667 -11.6327 0.0067 33 1 2.4154 -11.7861 0.0083 34 1 0.5797 -11.7551 0.0074 35 1 -0.9217 -11.0012 0.0067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701294002.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:59 Heat of formation + Delta-G solvation = -83.738050 kcal Electronic energy + Delta-G solvation = -20531.435607 eV Core-core repulsion = 17108.927106 eV Total energy + Delta-G solvation = -3422.508501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69859 -39.12119 -38.29302 -37.20362 -34.16968 -33.75284 -32.35869 -31.31355 -30.42005 -28.73143 -26.55576 -24.28285 -22.97497 -22.01993 -20.86005 -19.73628 -18.77833 -17.44481 -17.28537 -16.82320 -16.22176 -15.84425 -15.47166 -15.13865 -14.94381 -14.67433 -14.63370 -14.14038 -13.88047 -13.54692 -13.10081 -12.65729 -12.57965 -12.00348 -11.92130 -11.77966 -11.47142 -11.07900 -10.97684 -10.85519 -10.31170 -9.86239 -9.67437 -9.39789 -9.33704 -9.03426 -8.73770 -8.41971 -7.90202 -6.15728 -4.23227 0.64774 1.14868 2.85389 2.85451 3.24802 3.29387 3.30872 3.33330 3.44072 3.69579 4.15337 4.36410 4.46373 4.55989 4.75625 4.85041 5.05841 5.10071 5.19156 5.21665 5.21965 5.44736 5.51202 5.86817 5.97685 6.13278 6.40608 6.76262 7.16577 7.29718 7.35204 7.42671 7.52643 7.66303 7.96834 8.34313 8.57896 8.77736 9.06852 9.43051 10.94464 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.003270 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.739929 B = 8560.404445 C = 9416.698440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.710 5.710 11 C 0.498 3.502 12 O -0.519 6.519 13 C 0.032 3.968 14 O -0.250 6.250 15 C 0.191 3.809 16 C -0.223 4.223 17 C -0.051 4.051 18 C -0.174 4.174 19 C -0.048 4.048 20 C -0.177 4.177 21 C 0.553 3.447 22 N -0.860 5.860 23 O -0.498 6.498 24 H 0.266 0.734 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.390 0.610 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.395 0.605 35 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.495 -23.862 0.017 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.361 5.361 11 C 0.280 3.720 12 O -0.395 6.395 13 C -0.047 4.047 14 O -0.159 6.159 15 C 0.142 3.858 16 C -0.242 4.242 17 C -0.069 4.069 18 C -0.192 4.192 19 C -0.067 4.067 20 C -0.181 4.181 21 C 0.338 3.662 22 N -0.426 5.426 23 O -0.371 6.371 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.223 0.777 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.224 0.776 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 9.915 -23.030 0.022 25.074 hybrid contribution 1.125 0.576 -0.009 1.263 sum 11.040 -22.454 0.014 25.022 Atomic orbital electron populations 1.69983 1.06120 1.27354 1.48677 1.24962 0.94924 0.99470 0.94695 0.86395 0.79576 0.82597 0.78205 1.20457 1.20994 1.19748 1.21203 0.93260 0.90341 1.53453 0.91832 1.19149 0.88194 0.81523 0.98012 1.46328 1.11243 1.05336 1.73186 1.19816 0.89230 0.83825 0.79147 1.90774 1.16144 1.84259 1.48272 1.22773 0.95327 0.83403 1.03202 1.86480 1.32794 1.11012 1.85663 1.19187 0.89804 0.86472 0.90375 1.21355 0.92241 1.00517 1.10052 1.21137 1.00058 0.91772 0.93925 1.20950 0.94280 0.97961 1.06041 1.21101 0.93969 0.96421 0.95211 1.19308 0.93473 0.91426 1.13914 1.18079 0.87534 0.83745 0.76824 1.43745 1.11155 1.07911 1.79808 1.91040 1.65458 1.34136 1.46488 0.92390 0.95328 0.95331 0.77702 0.89310 0.89302 0.84464 0.85240 0.85357 0.85139 0.77647 0.76578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.80 5.43 -5.19 -0.03 6.78 16 10 N -0.71 -15.16 5.55 -61.47 -0.34 -15.50 16 11 C 0.50 10.65 7.91 -10.99 -0.09 10.56 16 12 O -0.52 -14.05 16.50 -14.35 -0.24 -14.28 16 13 C 0.03 0.49 5.22 36.01 0.19 0.68 16 14 O -0.25 -4.53 7.74 -48.93 -0.38 -4.91 16 15 C 0.19 2.70 6.70 -38.70 -0.26 2.44 16 16 C -0.22 -2.32 9.03 -39.47 -0.36 -2.67 16 17 C -0.05 -0.40 10.03 -39.53 -0.40 -0.80 16 18 C -0.17 -1.27 10.02 -39.63 -0.40 -1.67 16 19 C -0.05 -0.40 9.53 -39.20 -0.37 -0.77 16 20 C -0.18 -2.25 5.89 -104.85 -0.62 -2.87 16 21 C 0.55 8.03 8.04 -12.46 -0.10 7.93 16 22 N -0.86 -7.65 8.82 30.46 0.27 -7.38 16 23 O -0.50 -10.29 16.00 -16.58 -0.27 -10.55 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 28 H 0.09 1.07 7.66 -51.93 -0.40 0.68 16 29 H 0.09 1.07 7.66 -51.93 -0.40 0.68 16 30 H 0.14 1.17 6.30 -52.49 -0.33 0.84 16 31 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.13 0.60 6.40 -52.49 -0.34 0.27 16 34 H 0.39 1.99 6.86 -40.82 -0.28 1.71 16 35 H 0.40 3.22 8.93 -40.82 -0.36 2.86 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -39.23 311.72 -7.06 -46.28 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -3.67 Total: 5.30 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -2.84 Total: 6.12 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.66 Total: -48.55 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.88 Total: -29.75 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -39.23 -7.06 -46.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294002.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.455 kcal (2) G-P(sol) polarization free energy of solvation -39.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds