Wall clock time and date at job start Mon Mar 30 2020 23:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48503 * 109.46978 * 269.99961 * 3 2 1 5 5 H 1.48498 * 109.47362 * 29.99964 * 3 2 1 6 6 H 1.48495 * 109.47208 * 150.00002 * 3 2 1 7 7 C 1.37876 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99653 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00503 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47312 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99602 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00242 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99602 * 179.97438 * 11 10 9 14 14 O 1.42898 * 109.47014 * 179.97438 * 13 11 10 15 15 C 1.35656 * 117.00084 * 180.02562 * 14 13 11 16 16 C 1.38714 * 120.14894 * 359.97411 * 15 14 13 17 17 C 1.38051 * 120.08468 * 180.02562 * 16 15 14 18 18 C 1.38555 * 120.38906 * 0.02562 * 17 16 15 19 19 C 1.37786 * 120.30047 * 359.97438 * 18 17 16 20 20 C 1.39705 * 119.90585 * 0.02562 * 19 18 17 21 21 C 1.47544 * 120.19020 * 179.97438 * 20 19 18 22 22 N 1.34783 * 119.99517 * 359.97438 * 21 20 19 23 23 O 1.21581 * 119.99935 * 179.97438 * 21 20 19 24 24 H 0.97004 * 119.99784 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46875 * 59.99529 * 9 7 2 26 26 H 1.09001 * 109.46880 * 300.00585 * 9 7 2 27 27 H 0.96994 * 120.00170 * 359.97438 * 10 9 7 28 28 H 1.09003 * 109.47022 * 60.00137 * 13 11 10 29 29 H 1.09001 * 109.47568 * 299.99859 * 13 11 10 30 30 H 1.07996 * 119.95854 * 0.02699 * 16 15 14 31 31 H 1.07997 * 119.80544 * 180.27727 * 17 16 15 32 32 H 1.07998 * 119.84739 * 179.97438 * 18 17 16 33 33 H 1.07996 * 120.04310 * 180.02562 * 19 18 17 34 34 H 0.96998 * 120.00167 * 0.02562 * 22 21 20 35 35 H 0.97000 * 119.99219 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7536 -4.8834 0.0033 12 8 0.5612 -5.1049 0.0035 13 6 2.7329 -6.0288 0.0038 14 8 2.0184 -7.2663 0.0050 15 6 2.7571 -8.4041 0.0061 16 6 4.1426 -8.3351 0.0054 17 6 4.8931 -9.4938 0.0060 18 6 4.2710 -10.7319 0.0066 19 6 2.8959 -10.8189 0.0073 20 6 2.1243 -9.6543 0.0067 21 6 0.6513 -9.7402 0.0069 22 7 0.0466 -10.9448 0.0070 23 8 -0.0169 -8.7245 0.0069 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8919 27 1 3.1566 -3.4355 0.0022 28 1 3.3596 -5.9707 0.8937 29 1 3.3595 -5.9716 -0.8863 30 1 4.6347 -7.3738 0.0045 31 1 5.9714 -9.4349 0.0100 32 1 4.8667 -11.6327 0.0067 33 1 2.4154 -11.7861 0.0083 34 1 0.5797 -11.7551 0.0074 35 1 -0.9217 -11.0012 0.0067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701294002.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:58 Heat of formation + Delta-G solvation = -116.223353 kcal Electronic energy + Delta-G solvation = -20532.844276 eV Core-core repulsion = 17108.927106 eV Total energy + Delta-G solvation = -3423.917170 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.67592 -40.59805 -39.58482 -38.19963 -36.19734 -34.76440 -34.42389 -32.10953 -31.31379 -30.24113 -28.30489 -25.11579 -24.76395 -23.14057 -21.87930 -21.39895 -19.70467 -19.07647 -18.32348 -17.84258 -17.55160 -17.44709 -16.96670 -16.49690 -15.97750 -15.97592 -15.73090 -15.45280 -15.42470 -14.64687 -14.41673 -14.08317 -14.08117 -13.64985 -13.36019 -12.94521 -12.72360 -12.71751 -12.25375 -12.18391 -12.09031 -11.51121 -11.01730 -10.82802 -10.82622 -10.67017 -10.03311 -9.93346 -9.24856 -8.30100 -6.47942 -0.11099 0.42602 1.42792 1.46458 1.57195 1.59808 1.67295 1.94533 2.36923 2.59630 2.80553 2.88678 3.04791 3.65126 3.82888 3.90944 3.98925 4.08815 4.12851 4.30554 4.48702 4.53437 4.88142 5.06887 5.18602 5.18812 5.35031 5.42110 5.49384 5.62373 5.79259 5.80744 5.92008 6.30145 6.53739 6.62028 6.81747 7.20807 7.40708 7.42146 8.82559 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.003270 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.739929 B = 8560.404445 C = 9416.698440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.990 3.010 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.252 1.252 7 C -0.555 4.555 8 H 0.090 0.910 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.491 3.509 12 O -0.587 6.587 13 C 0.047 3.953 14 O -0.300 6.300 15 C 0.150 3.850 16 C -0.227 4.227 17 C -0.043 4.043 18 C -0.162 4.162 19 C -0.040 4.040 20 C -0.207 4.207 21 C 0.545 3.455 22 N -0.833 5.833 23 O -0.578 6.578 24 H 0.269 0.731 25 H -0.014 1.014 26 H -0.014 1.014 27 H 0.414 0.586 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.155 0.845 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.416 0.584 35 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.211 -25.760 0.028 30.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.813 3.187 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.175 1.175 7 C -0.593 4.593 8 H 0.108 0.892 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.277 3.723 12 O -0.467 6.467 13 C -0.031 4.031 14 O -0.211 6.211 15 C 0.102 3.898 16 C -0.245 4.245 17 C -0.061 4.061 18 C -0.180 4.180 19 C -0.058 4.058 20 C -0.211 4.211 21 C 0.332 3.668 22 N -0.399 5.399 23 O -0.458 6.458 24 H 0.078 0.922 25 H 0.004 0.996 26 H 0.004 0.996 27 H 0.250 0.750 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.172 0.828 31 H 0.184 0.816 32 H 0.186 0.814 33 H 0.185 0.815 34 H 0.249 0.751 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 14.721 -25.039 0.033 29.046 hybrid contribution -0.309 0.923 -0.014 0.973 sum 14.413 -24.116 0.020 28.094 Atomic orbital electron populations 1.70167 1.08503 1.28662 1.49886 1.26160 0.95792 1.04200 0.93766 0.85075 0.78485 0.76509 0.78632 1.19534 1.21115 1.17505 1.21611 0.94507 0.90122 1.53027 0.89172 1.18592 0.88721 0.84228 0.94104 1.45974 1.11552 1.04502 1.72942 1.20985 0.89530 0.85045 0.76752 1.90741 1.19635 1.85328 1.51001 1.22667 0.92997 0.80730 1.06724 1.86412 1.35103 1.12433 1.87177 1.19652 0.91419 0.85502 0.93234 1.21610 0.90582 1.02565 1.09749 1.21646 1.01774 0.91062 0.91640 1.21494 0.93939 0.99333 1.03263 1.21514 0.94593 0.96216 0.93485 1.19510 0.92594 0.92833 1.16150 1.18624 0.88666 0.83880 0.75639 1.43515 1.11707 1.07325 1.77383 1.91003 1.67185 1.36931 1.50675 0.92227 0.99613 0.99607 0.74951 0.85490 0.85478 0.82750 0.81641 0.81395 0.81541 0.75074 0.76037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.99 42.69 29.54 68.60 2.03 44.72 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.55 -30.64 9.28 25.60 0.24 -30.40 16 8 H 0.09 4.39 7.60 -2.91 -0.02 4.37 16 9 C 0.27 15.28 5.43 85.63 0.46 15.74 16 10 N -0.70 -30.68 5.55 -466.79 -2.59 -33.27 16 11 C 0.49 22.06 7.91 87.66 0.69 22.75 16 12 O -0.59 -34.54 16.50 16.01 0.26 -34.28 16 13 C 0.05 1.43 5.22 71.24 0.37 1.80 16 14 O -0.30 -11.33 7.74 -60.78 -0.47 -11.81 16 15 C 0.15 4.18 6.70 22.84 0.15 4.34 16 16 C -0.23 -4.06 9.03 22.34 0.20 -3.86 16 17 C -0.04 -0.48 10.03 22.30 0.22 -0.26 16 18 C -0.16 -1.52 10.02 22.24 0.22 -1.29 16 19 C -0.04 -0.52 9.53 22.52 0.21 -0.31 16 20 C -0.21 -5.14 5.89 -20.01 -0.12 -5.26 16 21 C 0.54 16.51 8.04 86.70 0.70 17.21 16 22 N -0.83 -14.49 8.82 -175.81 -1.55 -16.05 16 23 O -0.58 -26.09 16.00 16.95 0.27 -25.82 16 24 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 25 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 26 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H 0.41 14.08 8.32 -92.71 -0.77 13.31 16 28 H 0.13 2.83 7.66 -2.39 -0.02 2.81 16 29 H 0.13 2.83 7.66 -2.39 -0.02 2.81 16 30 H 0.15 2.06 6.30 -2.91 -0.02 2.04 16 31 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 33 H 0.17 0.78 6.40 -2.91 -0.02 0.76 16 34 H 0.42 3.27 6.86 -92.71 -0.64 2.63 16 35 H 0.41 6.59 8.93 -92.71 -0.83 5.77 16 Total: -1.00 -97.17 311.72 0.99 -96.18 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -1.07 Total: 17.04 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 3.82 Total: 20.94 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -3.86 Total: -106.98 kcal Atomic # 8 Polarization: -71.97 SS G_CDS: 0.06 Total: -71.90 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -97.17 0.99 -96.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294002.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.042 kcal (2) G-P(sol) polarization free energy of solvation -97.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds