Wall clock time and date at job start Tue Mar 31 2020 01:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31675 * 119.72156 * 2 1 4 4 C 1.31934 * 121.88365 * 179.97438 * 3 2 1 5 5 C 1.38356 * 121.09490 * 359.97438 * 4 3 2 6 6 C 1.38348 * 119.30511 * 0.25346 * 5 4 3 7 7 C 1.39578 * 119.71337 * 179.97438 * 2 1 3 8 8 C 1.47720 * 120.56763 * 0.02562 * 7 2 1 9 9 O 1.21466 * 120.00089 * 5.92489 * 8 7 2 10 10 O 1.34711 * 119.99454 * 185.92904 * 8 7 2 11 11 C 1.45202 * 116.99327 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.46977 * 180.02562 * 11 10 8 13 13 O 1.21278 * 119.99842 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99858 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99571 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.46760 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00160 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99999 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99856 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99944 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47324 * 90.00378 * 20 18 16 22 22 H 1.48500 * 109.46583 * 210.00364 * 20 18 16 23 23 H 1.48502 * 109.47031 * 329.99869 * 20 18 16 24 24 H 1.08998 * 109.47006 * 96.56352 * 1 2 3 25 25 H 1.08993 * 109.47480 * 216.56426 * 1 2 3 26 26 H 1.08998 * 109.46793 * 336.56787 * 1 2 3 27 27 H 1.08003 * 119.45567 * 180.02562 * 4 3 2 28 28 H 1.07994 * 120.35406 * 179.97438 * 5 4 3 29 29 H 1.07994 * 120.85965 * 179.72147 * 6 5 4 30 30 H 1.09004 * 109.47067 * 299.99717 * 11 10 8 31 31 H 1.09000 * 109.47307 * 60.00327 * 11 10 8 32 32 H 0.96998 * 120.00147 * 359.97438 * 14 12 11 33 33 H 1.08997 * 109.46787 * 299.98859 * 15 14 12 34 34 H 1.08992 * 109.47308 * 59.99471 * 15 14 12 35 35 H 0.96998 * 120.00307 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1435 0.0000 4 6 3.4783 1.1933 0.0005 5 6 4.2370 0.0363 0.0016 6 6 3.5995 -1.1915 -0.0032 7 6 2.1989 -1.2123 0.0005 8 6 1.4666 -2.4952 0.0005 9 8 0.2569 -2.5039 -0.1085 10 8 2.1405 -3.6553 0.1216 11 6 1.3560 -4.8771 0.1131 12 6 2.2733 -6.0640 0.2583 13 8 3.4703 -5.8966 0.3585 14 7 1.7635 -7.3115 0.2758 15 6 2.6554 -8.4653 0.4164 16 6 1.8413 -9.7334 0.4077 17 1 0.7670 -9.6848 0.3071 18 6 2.4679 -10.9558 0.5272 19 7 3.7760 -11.0150 0.6492 20 14 1.4587 -12.5277 0.5157 21 1 1.3180 -13.0155 -0.8798 22 1 2.1425 -13.5607 1.3346 23 1 0.1135 -12.2565 1.0834 24 1 -0.3633 -0.1175 -1.0209 25 1 -0.3634 -0.8253 0.6122 26 1 -0.3633 0.9429 0.4087 27 1 3.9735 2.1531 0.0009 28 1 5.3156 0.0910 0.0016 29 1 4.1671 -2.1103 -0.0070 30 1 0.6493 -4.8609 0.9429 31 1 0.8104 -4.9521 -0.8275 32 1 0.8062 -7.4454 0.1952 33 1 3.3622 -8.4813 -0.4132 34 1 3.2008 -8.3905 1.3570 35 1 4.2169 -11.8749 0.7329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731096592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:00 Heat of formation + Delta-G solvation = -87.042444 kcal Electronic energy + Delta-G solvation = -20249.180524 eV Core-core repulsion = 16826.528734 eV Total energy + Delta-G solvation = -3422.651791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.17564 -39.91703 -38.69790 -36.53252 -34.29909 -33.33357 -32.86243 -32.44301 -29.41578 -28.10180 -26.71611 -24.95195 -22.86039 -22.40176 -21.40325 -19.99632 -18.26645 -17.67917 -16.93594 -16.76311 -16.45433 -16.29436 -15.55626 -15.16346 -15.05392 -14.52418 -14.33012 -14.05337 -13.41991 -13.16218 -13.05862 -12.77949 -12.67003 -12.56574 -12.18591 -12.02934 -11.81561 -11.04335 -10.95186 -10.78237 -10.52884 -10.37414 -10.25822 -9.89727 -9.47575 -9.39447 -9.23697 -8.81675 -8.03634 -6.22699 -4.30241 0.20906 0.85948 2.25533 2.29605 3.11725 3.21123 3.27487 3.29734 3.41901 3.83133 3.96406 4.29014 4.35278 4.45667 4.52046 4.71720 4.98135 5.13418 5.16104 5.17758 5.19376 5.28533 5.44787 5.49494 5.66557 5.80268 5.88611 6.14104 6.34985 7.18110 7.25436 7.41734 7.50139 7.52211 7.59260 7.88500 8.45074 8.66942 8.91349 9.36280 10.87449 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044193 B = 0.002833 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.434122 B = 9882.344536 C =10486.448472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.195 3.805 3 N -0.494 5.494 4 C 0.135 3.865 5 C -0.194 4.194 6 C -0.010 4.010 7 C -0.181 4.181 8 C 0.513 3.487 9 O -0.499 6.499 10 O -0.325 6.325 11 C 0.050 3.950 12 C 0.500 3.500 13 O -0.535 6.535 14 N -0.705 5.705 15 C 0.251 3.749 16 C -0.546 4.546 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.164 0.836 28 H 0.146 0.854 29 H 0.156 0.844 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.393 0.607 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 21.505 -1.511 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.057 3.943 3 N -0.204 5.204 4 C -0.021 4.021 5 C -0.214 4.214 6 C -0.036 4.036 7 C -0.184 4.184 8 C 0.357 3.643 9 O -0.389 6.389 10 O -0.239 6.239 11 C -0.027 4.027 12 C 0.283 3.717 13 O -0.413 6.413 14 N -0.356 5.356 15 C 0.131 3.869 16 C -0.584 4.584 17 H 0.083 0.917 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.104 0.896 25 H 0.120 0.880 26 H 0.092 0.908 27 H 0.181 0.819 28 H 0.163 0.837 29 H 0.174 0.826 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.226 0.774 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.493 22.190 -1.438 22.509 hybrid contribution -0.394 -1.848 -0.080 1.891 sum -3.887 20.342 -1.518 20.765 Atomic orbital electron populations 1.21110 0.87376 1.04192 1.04391 1.21558 0.97692 0.86303 0.88737 1.67732 1.10081 1.27997 1.14552 1.23097 0.89381 0.99019 0.90645 1.22191 1.02249 0.92813 1.04109 1.22119 0.93004 0.99903 0.88560 1.19958 0.94612 0.91597 1.12230 1.20905 0.85844 0.84342 0.73199 1.90794 1.14626 1.87650 1.45816 1.86588 1.40479 1.13923 1.82941 1.22912 0.93691 0.81402 1.04728 1.19868 0.88841 0.84126 0.78906 1.90704 1.15374 1.85595 1.49593 1.46368 1.11799 1.05737 1.71659 1.19181 0.89446 0.80453 0.97808 1.21204 0.93760 0.90514 1.52927 0.91747 1.24954 0.95049 0.99397 0.94578 1.69967 1.08120 1.26016 1.48093 0.86386 0.79958 0.82243 0.78168 1.20410 1.20961 1.19699 0.89566 0.88042 0.90782 0.81929 0.83655 0.82616 0.88285 0.88278 0.77371 0.95243 0.95233 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 8.88 36.01 0.32 -0.83 16 2 C 0.20 2.23 6.82 -82.16 -0.56 1.67 16 3 N -0.49 -5.34 10.26 -9.13 -0.09 -5.43 16 4 C 0.14 1.11 11.17 -17.46 -0.20 0.92 16 5 C -0.19 -1.55 10.10 -39.50 -0.40 -1.94 16 6 C -0.01 -0.11 9.74 -38.85 -0.38 -0.48 16 7 C -0.18 -2.17 5.89 -104.83 -0.62 -2.78 16 8 C 0.51 6.98 7.83 34.60 0.27 7.25 16 9 O -0.50 -7.05 13.16 -19.24 -0.25 -7.30 16 10 O -0.32 -4.94 9.10 -47.20 -0.43 -5.37 16 11 C 0.05 0.73 5.95 36.01 0.21 0.94 16 12 C 0.50 9.68 7.91 -10.98 -0.09 9.59 16 13 O -0.54 -12.66 16.50 -14.10 -0.23 -12.89 16 14 N -0.71 -14.19 5.55 -61.47 -0.34 -14.53 16 15 C 0.25 6.45 5.43 -5.19 -0.03 6.43 16 16 C -0.55 -14.42 9.28 -34.44 -0.32 -14.74 16 17 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.58 13.29 55.43 0.74 -24.85 16 20 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.10 1.11 5.84 -51.93 -0.30 0.80 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.16 0.78 8.06 -52.48 -0.42 0.35 16 28 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 29 H 0.16 1.61 7.72 -52.49 -0.41 1.20 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.39 6.60 8.32 -40.82 -0.34 6.26 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 315.92 15.07 4.76 4.76 Total: -1.00 -33.06 315.92 -6.71 -39.77 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -3.96 Total: 2.72 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -1.88 Total: 7.67 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.30 Total: -44.80 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.92 Total: -25.56 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.06 -6.71 -39.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731096592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.271 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds