Wall clock time and date at job start Tue Mar 31 2020 00:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31675 * 119.72156 * 2 1 4 4 C 1.31934 * 121.88365 * 179.97438 * 3 2 1 5 5 C 1.38356 * 121.09490 * 359.97438 * 4 3 2 6 6 C 1.38348 * 119.30511 * 0.25346 * 5 4 3 7 7 C 1.39578 * 119.71337 * 179.97438 * 2 1 3 8 8 C 1.47720 * 120.56763 * 0.02562 * 7 2 1 9 9 O 1.21466 * 120.00089 * 5.92489 * 8 7 2 10 10 O 1.34711 * 119.99454 * 185.92904 * 8 7 2 11 11 C 1.45202 * 116.99327 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.46977 * 180.02562 * 11 10 8 13 13 O 1.21278 * 119.99842 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99858 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99571 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.46760 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00160 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99999 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99856 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99944 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47324 * 90.00378 * 20 18 16 22 22 H 1.48500 * 109.46583 * 210.00364 * 20 18 16 23 23 H 1.48502 * 109.47031 * 329.99869 * 20 18 16 24 24 H 1.08998 * 109.47006 * 96.56352 * 1 2 3 25 25 H 1.08993 * 109.47480 * 216.56426 * 1 2 3 26 26 H 1.08998 * 109.46793 * 336.56787 * 1 2 3 27 27 H 1.08003 * 119.45567 * 180.02562 * 4 3 2 28 28 H 1.07994 * 120.35406 * 179.97438 * 5 4 3 29 29 H 1.07994 * 120.85965 * 179.72147 * 6 5 4 30 30 H 1.09004 * 109.47067 * 299.99717 * 11 10 8 31 31 H 1.09000 * 109.47307 * 60.00327 * 11 10 8 32 32 H 0.96998 * 120.00147 * 359.97438 * 14 12 11 33 33 H 1.08997 * 109.46787 * 299.98859 * 15 14 12 34 34 H 1.08992 * 109.47308 * 59.99471 * 15 14 12 35 35 H 0.96998 * 120.00307 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1435 0.0000 4 6 3.4783 1.1933 0.0005 5 6 4.2370 0.0363 0.0016 6 6 3.5995 -1.1915 -0.0032 7 6 2.1989 -1.2123 0.0005 8 6 1.4666 -2.4952 0.0005 9 8 0.2569 -2.5039 -0.1085 10 8 2.1405 -3.6553 0.1216 11 6 1.3560 -4.8771 0.1131 12 6 2.2733 -6.0640 0.2583 13 8 3.4703 -5.8966 0.3585 14 7 1.7635 -7.3115 0.2758 15 6 2.6554 -8.4653 0.4164 16 6 1.8413 -9.7334 0.4077 17 1 0.7670 -9.6848 0.3071 18 6 2.4679 -10.9558 0.5272 19 7 3.7760 -11.0150 0.6492 20 14 1.4587 -12.5277 0.5157 21 1 1.3180 -13.0155 -0.8798 22 1 2.1425 -13.5607 1.3346 23 1 0.1135 -12.2565 1.0834 24 1 -0.3633 -0.1175 -1.0209 25 1 -0.3634 -0.8253 0.6122 26 1 -0.3633 0.9429 0.4087 27 1 3.9735 2.1531 0.0009 28 1 5.3156 0.0910 0.0016 29 1 4.1671 -2.1103 -0.0070 30 1 0.6493 -4.8609 0.9429 31 1 0.8104 -4.9521 -0.8275 32 1 0.8062 -7.4454 0.1952 33 1 3.3622 -8.4813 -0.4132 34 1 3.2008 -8.3905 1.3570 35 1 4.2169 -11.8749 0.7329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731096592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:58 Heat of formation + Delta-G solvation = -109.605461 kcal Electronic energy + Delta-G solvation = -20250.158930 eV Core-core repulsion = 16826.528734 eV Total energy + Delta-G solvation = -3423.630197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.12292 -40.96703 -40.19573 -37.67449 -36.19310 -34.42767 -34.08659 -33.65795 -30.87627 -29.11863 -28.31122 -25.85664 -24.61676 -23.36585 -22.38425 -21.65980 -19.45122 -19.02088 -18.20417 -17.90955 -17.44934 -17.33367 -17.02728 -16.84191 -16.32796 -16.06855 -15.44728 -15.07073 -14.62224 -14.44475 -14.17320 -14.10007 -13.83451 -13.71576 -13.48584 -13.39246 -12.99231 -12.92695 -12.72292 -12.23520 -11.94194 -11.51183 -11.48481 -11.06007 -10.95400 -10.82230 -10.64290 -10.12971 -9.93799 -8.30162 -6.46581 -0.59971 0.11086 1.13014 1.33250 1.44581 1.46003 1.54352 1.57462 2.32479 2.53435 2.65651 3.05304 3.21680 3.45914 3.61583 3.70278 3.83106 3.96970 4.03695 4.05121 4.39053 4.52431 4.68615 4.71107 4.95700 4.99809 5.07653 5.08490 5.21559 5.27710 5.41172 5.57129 5.62409 5.81705 6.46460 6.62505 6.77005 6.77544 7.19873 7.34826 8.81965 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044193 B = 0.002833 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.434122 B = 9882.344536 C =10486.448472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.185 3.815 3 N -0.510 5.510 4 C 0.140 3.860 5 C -0.183 4.183 6 C -0.023 4.023 7 C -0.202 4.202 8 C 0.515 3.485 9 O -0.507 6.507 10 O -0.343 6.343 11 C 0.062 3.938 12 C 0.500 3.500 13 O -0.583 6.583 14 N -0.698 5.698 15 C 0.267 3.733 16 C -0.557 4.557 17 H 0.086 0.914 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.984 3.016 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.255 1.255 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.202 0.798 28 H 0.178 0.822 29 H 0.150 0.850 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.413 0.587 33 H -0.007 1.007 34 H -0.007 1.007 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 22.563 -1.730 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.047 3.953 3 N -0.220 5.220 4 C -0.016 4.016 5 C -0.202 4.202 6 C -0.048 4.048 7 C -0.205 4.205 8 C 0.360 3.640 9 O -0.398 6.398 10 O -0.258 6.258 11 C -0.015 4.015 12 C 0.286 3.714 13 O -0.464 6.464 14 N -0.349 5.349 15 C 0.144 3.856 16 C -0.594 4.594 17 H 0.104 0.896 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.807 3.193 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.179 1.179 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.219 0.781 28 H 0.196 0.804 29 H 0.168 0.832 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.249 0.751 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.939 23.278 -1.664 23.854 hybrid contribution 0.136 -2.038 -0.012 2.042 sum -4.803 21.240 -1.676 21.841 Atomic orbital electron populations 1.21063 0.86970 1.04314 1.04316 1.21704 0.98237 0.86341 0.88975 1.67797 1.11478 1.27551 1.15222 1.23779 0.88620 1.00732 0.88510 1.22545 1.03858 0.91609 1.02178 1.22225 0.92541 1.00916 0.89130 1.19983 0.95349 0.90911 1.14291 1.21171 0.85870 0.84206 0.72743 1.90783 1.14874 1.87665 1.46430 1.86576 1.41319 1.14488 1.83436 1.22791 0.92128 0.79286 1.07287 1.20666 0.88848 0.84981 0.76952 1.90680 1.17911 1.86358 1.51432 1.46036 1.12158 1.04959 1.71797 1.18625 0.89658 0.82842 0.94445 1.21613 0.94823 0.90650 1.52357 0.89584 1.26043 0.96128 1.03482 0.93860 1.70125 1.10321 1.27092 1.49329 0.85163 0.78631 0.77091 0.78382 1.19648 1.21052 1.17914 0.89402 0.89086 0.89678 0.78148 0.80444 0.83239 0.85524 0.85516 0.75069 0.98931 0.98933 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 8.88 71.24 0.63 -1.51 16 2 C 0.18 4.06 6.82 42.91 0.29 4.35 16 3 N -0.51 -10.10 10.26 -182.80 -1.88 -11.98 16 4 C 0.14 1.90 11.17 84.71 0.95 2.85 16 5 C -0.18 -2.47 10.10 22.32 0.23 -2.25 16 6 C -0.02 -0.45 9.74 22.74 0.22 -0.23 16 7 C -0.20 -4.75 5.89 -20.00 -0.12 -4.87 16 8 C 0.51 13.80 7.83 70.33 0.55 14.35 16 9 O -0.51 -13.89 13.16 19.95 0.26 -13.63 16 10 O -0.34 -10.34 9.10 -49.82 -0.45 -10.80 16 11 C 0.06 1.72 5.95 71.24 0.42 2.14 16 12 C 0.50 19.52 7.91 87.66 0.69 20.21 16 13 O -0.58 -28.62 16.50 15.78 0.26 -28.36 16 14 N -0.70 -28.17 5.55 -466.79 -2.59 -30.76 16 15 C 0.27 14.20 5.43 85.63 0.46 14.66 16 16 C -0.56 -29.43 9.28 25.60 0.24 -29.19 16 17 H 0.09 4.08 7.60 -2.91 -0.02 4.05 16 18 C 0.00 0.25 5.46 84.66 0.46 0.72 16 19 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 20 Si 0.98 41.50 29.54 68.60 2.03 43.53 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 24 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.09 1.96 5.84 -2.39 -0.01 1.94 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 28 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 29 H 0.15 3.12 7.72 -2.91 -0.02 3.09 16 30 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.41 13.32 8.32 -92.71 -0.77 12.54 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.27 14.91 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -74.04 315.92 3.31 -70.73 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.36 Total: 14.89 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 5.03 Total: 21.24 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -4.18 Total: -97.60 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: 0.07 Total: -52.79 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -74.04 3.31 -70.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731096592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.874 kcal (2) G-P(sol) polarization free energy of solvation -74.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds