Wall clock time and date at job start Tue Mar 31 2020 00:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 119.62022 * 2 1 4 4 C 1.38630 * 119.16347 * 179.97438 * 3 2 1 5 5 C 1.38675 * 118.41860 * 0.25530 * 4 3 2 6 6 C 1.50699 * 120.41772 * 179.74920 * 5 4 3 7 7 C 1.50705 * 109.47057 * 89.99771 * 6 5 4 8 8 O 1.20831 * 119.99795 * 0.02562 * 7 6 5 9 9 O 1.34228 * 119.99744 * 179.97438 * 7 6 5 10 10 C 1.45201 * 116.99749 * 180.02562 * 9 7 6 11 11 C 1.50694 * 109.47207 * 179.97438 * 10 9 7 12 12 O 1.21295 * 119.99888 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00112 * 179.97438 * 11 10 9 14 14 C 1.37095 * 119.99922 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00552 * 0.02562 * 14 13 11 16 16 C 1.38950 * 120.00031 * 180.02562 * 14 13 11 17 17 N 1.31418 * 119.99921 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00134 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47098 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47146 * 119.99452 * 18 16 14 21 21 H 1.48493 * 109.46940 * 239.99431 * 18 16 14 22 22 C 1.38181 * 119.15910 * 359.47628 * 5 4 3 23 23 N 1.31857 * 119.61823 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.46662 * 89.99795 * 1 2 3 25 25 H 1.08999 * 109.47158 * 209.99996 * 1 2 3 26 26 H 1.08991 * 109.47069 * 330.00334 * 1 2 3 27 27 H 1.07997 * 120.41892 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.78834 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.46977 * 209.99446 * 6 5 4 30 30 H 1.08994 * 109.47024 * 329.99906 * 6 5 4 31 31 H 1.09004 * 109.47083 * 300.00215 * 10 9 7 32 32 H 1.09003 * 109.47204 * 59.99852 * 10 9 7 33 33 H 0.97000 * 120.00250 * 0.02562 * 13 11 10 34 34 H 0.96998 * 120.00012 * 180.02562 * 17 16 14 35 35 H 1.08008 * 119.61503 * 180.25015 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2267 -0.0343 -0.0044 6 6 5.7323 -0.0989 -0.0097 7 6 6.2390 -0.1234 1.4094 8 8 5.4576 -0.0922 2.3305 9 8 7.5583 -0.1810 1.6500 10 6 7.9744 -0.2022 3.0409 11 6 9.4781 -0.2680 3.1145 12 8 10.1346 -0.2940 2.0949 13 7 10.0935 -0.2969 4.3132 14 6 11.4615 -0.3562 4.3801 15 1 12.0462 -0.3794 3.4723 16 6 12.0960 -0.3866 5.6159 17 7 11.3848 -0.3579 6.7206 18 14 13.9601 -0.4667 5.7071 19 1 14.5225 -0.4879 4.3329 20 1 14.4718 0.7232 6.4335 21 1 14.3679 -1.6995 6.4274 22 6 3.4766 -1.1948 0.0014 23 7 2.1587 -1.1463 0.0005 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5137 27 1 1.6508 2.1373 0.0004 28 1 4.1366 2.1139 0.0001 29 1 6.0553 -1.0025 -0.5265 30 1 6.1316 0.7758 -0.5230 31 1 7.6251 0.7026 3.5384 32 1 7.5482 -1.0757 3.5344 33 1 9.5685 -0.2757 5.1286 34 1 11.8277 -0.3787 7.5833 35 1 3.9754 -2.1528 0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:48 Heat of formation + Delta-G solvation = -94.199392 kcal Electronic energy + Delta-G solvation = -20064.241785 eV Core-core repulsion = 16641.279646 eV Total energy + Delta-G solvation = -3422.962139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.82195 -39.99269 -38.15659 -36.20899 -34.34298 -34.01749 -32.51649 -31.40484 -30.50147 -28.41345 -26.37460 -24.58231 -23.78327 -22.21357 -20.67587 -19.59703 -18.09341 -17.62224 -17.05852 -16.69482 -16.28187 -16.06986 -15.50163 -15.24650 -14.66895 -14.44491 -14.21192 -13.94301 -13.50647 -13.25545 -13.00189 -12.81847 -12.58610 -12.45891 -12.13327 -11.98967 -11.78212 -11.63650 -11.16411 -10.50452 -10.43878 -10.40256 -10.31255 -9.99928 -9.67124 -9.63241 -9.03959 -8.53926 -8.09983 -6.51524 -3.93628 0.80588 1.07803 2.27350 2.71263 3.10654 3.22918 3.30333 3.58807 3.71901 4.03933 4.11089 4.38385 4.46119 4.66243 4.68993 4.73410 5.02008 5.09616 5.13565 5.20593 5.27718 5.30896 5.35851 5.52431 5.54099 5.67775 5.73692 5.88105 6.00453 6.03909 6.46838 6.61583 7.46574 7.77340 7.81990 7.94687 8.46773 9.05627 9.37756 9.87453 10.65770 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.055326 B = 0.002643 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.966507 B =10590.270305 C =10792.200920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.125 3.875 3 C -0.172 4.172 4 C -0.055 4.055 5 C -0.132 4.132 6 C -0.068 4.068 7 C 0.458 3.542 8 O -0.508 6.508 9 O -0.325 6.325 10 C 0.061 3.939 11 C 0.438 3.562 12 O -0.576 6.576 13 N -0.553 5.553 14 C -0.302 4.302 15 H 0.107 0.893 16 C 0.024 3.976 17 N -0.897 5.897 18 Si 0.934 3.066 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.123 3.877 23 N -0.485 5.485 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.395 0.605 34 H 0.273 0.727 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.044 2.524 -11.671 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.012 4.012 3 C -0.192 4.192 4 C -0.080 4.080 5 C -0.134 4.134 6 C -0.106 4.106 7 C 0.300 3.700 8 O -0.396 6.396 9 O -0.240 6.240 10 C -0.017 4.017 11 C 0.223 3.777 12 O -0.460 6.460 13 N -0.190 5.190 14 C -0.431 4.431 15 H 0.125 0.875 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.760 3.240 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.034 4.034 23 N -0.194 5.194 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.228 0.772 34 H 0.083 0.917 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.225 1.734 -11.852 21.809 hybrid contribution 1.091 0.811 0.952 1.660 sum -17.134 2.545 -10.901 20.466 Atomic orbital electron populations 1.20714 0.88846 1.03549 1.02996 1.21339 0.97089 0.88461 0.94315 1.21914 0.94652 0.99330 1.03271 1.21480 0.94518 0.97753 0.94297 1.20304 0.94910 0.94870 1.03333 1.20177 0.91270 1.07408 0.91758 1.23547 0.81097 0.72994 0.92367 1.90685 1.57178 1.45356 1.46429 1.86544 1.24269 1.82814 1.30346 1.22750 0.96100 1.03478 0.79323 1.19322 0.87243 0.85980 0.85167 1.90562 1.65965 1.55302 1.34209 1.41720 1.07766 1.63688 1.05849 1.19778 0.80981 1.47951 0.94385 0.87540 1.25327 1.00965 0.96906 0.94632 1.69625 1.36520 1.49691 0.97924 0.85735 0.81721 0.77822 0.78691 1.19073 1.20614 1.20608 1.22619 0.89246 0.97878 0.93698 1.67542 1.09646 1.29357 1.12861 0.90423 0.90425 0.90705 0.84707 0.84668 0.86164 0.86345 0.89586 0.89540 0.77156 0.91661 0.82674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.17 36.01 0.37 -0.37 16 2 C 0.13 1.30 6.78 -82.59 -0.56 0.74 16 3 C -0.17 -1.60 9.74 -39.44 -0.38 -1.98 16 4 C -0.05 -0.54 9.86 -39.27 -0.39 -0.93 16 5 C -0.13 -1.43 4.39 -104.48 -0.46 -1.89 16 6 C -0.07 -0.69 5.97 -29.03 -0.17 -0.87 16 7 C 0.46 6.84 7.95 36.01 0.29 7.13 16 8 O -0.51 -8.81 15.78 -18.75 -0.30 -9.11 16 9 O -0.33 -5.86 9.75 -45.90 -0.45 -6.31 16 10 C 0.06 1.15 5.94 36.00 0.21 1.37 16 11 C 0.44 10.52 7.86 -10.99 -0.09 10.43 16 12 O -0.58 -15.92 16.08 -14.12 -0.23 -16.15 16 13 N -0.55 -13.96 5.29 -10.96 -0.06 -14.02 16 14 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 15 H 0.11 3.06 7.16 -52.48 -0.38 2.69 16 16 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 17 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 18 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 22 C 0.12 1.41 10.86 -17.55 -0.19 1.22 16 23 N -0.48 -5.96 10.27 -9.47 -0.10 -6.05 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 28 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.12 0.97 8.10 -51.93 -0.42 0.55 16 30 H 0.12 0.96 8.09 -51.93 -0.42 0.54 16 31 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 32 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 33 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 34 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.16 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -34.25 320.17 -6.27 -40.51 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.05 Total: 7.08 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -1.61 Total: 6.94 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.57 Total: -43.41 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.97 Total: -31.56 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.25 -6.27 -40.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.687 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds