Wall clock time and date at job start Tue Mar 31 2020 00:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 119.62022 * 2 1 4 4 C 1.38630 * 119.16347 * 179.97438 * 3 2 1 5 5 C 1.38675 * 118.41860 * 0.25530 * 4 3 2 6 6 C 1.50699 * 120.41772 * 179.74920 * 5 4 3 7 7 C 1.50705 * 109.47057 * 89.99771 * 6 5 4 8 8 O 1.20831 * 119.99795 * 0.02562 * 7 6 5 9 9 O 1.34228 * 119.99744 * 179.97438 * 7 6 5 10 10 C 1.45201 * 116.99749 * 180.02562 * 9 7 6 11 11 C 1.50694 * 109.47207 * 179.97438 * 10 9 7 12 12 O 1.21295 * 119.99888 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00112 * 179.97438 * 11 10 9 14 14 C 1.37095 * 119.99922 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00552 * 0.02562 * 14 13 11 16 16 C 1.38950 * 120.00031 * 180.02562 * 14 13 11 17 17 N 1.31418 * 119.99921 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00134 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47098 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47146 * 119.99452 * 18 16 14 21 21 H 1.48493 * 109.46940 * 239.99431 * 18 16 14 22 22 C 1.38181 * 119.15910 * 359.47628 * 5 4 3 23 23 N 1.31857 * 119.61823 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.46662 * 89.99795 * 1 2 3 25 25 H 1.08999 * 109.47158 * 209.99996 * 1 2 3 26 26 H 1.08991 * 109.47069 * 330.00334 * 1 2 3 27 27 H 1.07997 * 120.41892 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.78834 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.46977 * 209.99446 * 6 5 4 30 30 H 1.08994 * 109.47024 * 329.99906 * 6 5 4 31 31 H 1.09004 * 109.47083 * 300.00215 * 10 9 7 32 32 H 1.09003 * 109.47204 * 59.99852 * 10 9 7 33 33 H 0.97000 * 120.00250 * 0.02562 * 13 11 10 34 34 H 0.96998 * 120.00012 * 180.02562 * 17 16 14 35 35 H 1.08008 * 119.61503 * 180.25015 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2267 -0.0343 -0.0044 6 6 5.7323 -0.0989 -0.0097 7 6 6.2390 -0.1234 1.4094 8 8 5.4576 -0.0922 2.3305 9 8 7.5583 -0.1810 1.6500 10 6 7.9744 -0.2022 3.0409 11 6 9.4781 -0.2680 3.1145 12 8 10.1346 -0.2940 2.0949 13 7 10.0935 -0.2969 4.3132 14 6 11.4615 -0.3562 4.3801 15 1 12.0462 -0.3794 3.4723 16 6 12.0960 -0.3866 5.6159 17 7 11.3848 -0.3579 6.7206 18 14 13.9601 -0.4667 5.7071 19 1 14.5225 -0.4879 4.3329 20 1 14.4718 0.7232 6.4335 21 1 14.3679 -1.6995 6.4274 22 6 3.4766 -1.1948 0.0014 23 7 2.1587 -1.1463 0.0005 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5137 27 1 1.6508 2.1373 0.0004 28 1 4.1366 2.1139 0.0001 29 1 6.0553 -1.0025 -0.5265 30 1 6.1316 0.7758 -0.5230 31 1 7.6251 0.7026 3.5384 32 1 7.5482 -1.0757 3.5344 33 1 9.5685 -0.2757 5.1286 34 1 11.8277 -0.3787 7.5833 35 1 3.9754 -2.1528 0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731242701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:47 Heat of formation + Delta-G solvation = -116.466177 kcal Electronic energy + Delta-G solvation = -20065.207346 eV Core-core repulsion = 16641.279646 eV Total energy + Delta-G solvation = -3423.927700 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.86783 -41.03095 -40.01038 -37.58156 -36.04282 -35.15863 -33.42909 -33.25032 -31.36746 -29.88698 -27.33668 -26.39267 -24.54770 -23.12893 -21.74752 -21.43219 -20.08640 -18.88949 -18.02487 -18.00946 -17.46451 -17.22526 -16.96653 -16.41037 -16.03867 -15.77927 -15.71186 -15.29787 -14.61688 -14.25542 -14.17340 -13.92365 -13.59838 -13.56575 -13.26435 -13.19781 -12.99876 -12.94190 -12.52154 -12.47390 -12.11094 -11.87404 -11.72252 -11.59324 -10.77659 -10.52934 -10.43942 -10.13045 -9.78705 -8.53557 -6.04269 0.02846 0.32649 1.10737 1.34169 1.39794 1.48245 1.60035 1.85660 2.29373 2.77261 3.09982 3.12025 3.33011 3.59552 3.78304 3.80087 3.97781 4.01217 4.10880 4.14381 4.20824 4.36963 4.52426 4.65697 4.71453 4.80058 4.84873 5.14208 5.18899 5.27836 5.33750 5.37002 5.77465 5.88103 6.44423 6.64464 7.01318 7.01879 7.38664 7.91819 8.63741 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.055326 B = 0.002643 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.966507 B =10590.270305 C =10792.200920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.109 3.891 3 C -0.173 4.173 4 C -0.063 4.063 5 C -0.143 4.143 6 C -0.058 4.058 7 C 0.460 3.540 8 O -0.534 6.534 9 O -0.342 6.342 10 C 0.072 3.928 11 C 0.437 3.563 12 O -0.617 6.617 13 N -0.559 5.559 14 C -0.337 4.337 15 H 0.085 0.915 16 C -0.010 4.010 17 N -0.916 5.916 18 Si 0.999 3.001 19 H -0.270 1.270 20 H -0.269 1.269 21 H -0.270 1.270 22 C 0.104 3.896 23 N -0.515 5.515 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.164 0.836 28 H 0.156 0.844 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.400 0.600 34 H 0.281 0.719 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.598 3.318 -11.932 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.028 4.028 3 C -0.193 4.193 4 C -0.089 4.089 5 C -0.145 4.145 6 C -0.096 4.096 7 C 0.305 3.695 8 O -0.423 6.423 9 O -0.257 6.257 10 C -0.005 4.005 11 C 0.224 3.776 12 O -0.504 6.504 13 N -0.197 5.197 14 C -0.466 4.466 15 H 0.103 0.897 16 C -0.211 4.211 17 N -0.556 5.556 18 Si 0.822 3.178 19 H -0.195 1.195 20 H -0.194 1.194 21 H -0.195 1.195 22 C -0.052 4.052 23 N -0.225 5.225 24 H 0.109 0.891 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.181 0.819 28 H 0.173 0.827 29 H 0.161 0.839 30 H 0.163 0.837 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.234 0.766 34 H 0.090 0.910 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.812 2.528 -12.100 22.510 hybrid contribution 1.157 0.579 1.011 1.642 sum -17.655 3.107 -11.089 21.079 Atomic orbital electron populations 1.20795 0.86890 1.04160 1.04040 1.21924 0.98626 0.88489 0.93784 1.22268 0.94690 1.00152 1.02153 1.21855 0.95163 0.98249 0.93625 1.20386 0.95054 0.95119 1.03972 1.20323 0.90876 1.09721 0.88677 1.24444 0.79572 0.71540 0.93986 1.90674 1.57310 1.46641 1.47701 1.86556 1.26358 1.83413 1.29402 1.22478 0.92171 1.05123 0.80755 1.20115 0.89383 0.84073 0.84076 1.90526 1.67652 1.56763 1.35423 1.41768 1.07371 1.63943 1.06570 1.19763 0.82149 1.50381 0.94275 0.89687 1.26153 1.05390 0.95698 0.93856 1.69682 1.38280 1.49273 0.98414 0.84783 0.76122 0.78419 0.78486 1.19468 1.19444 1.19497 1.22873 0.89445 0.98743 0.94179 1.67557 1.10171 1.30678 1.14045 0.89069 0.91214 0.88671 0.81857 0.82683 0.83932 0.83739 0.87746 0.87883 0.76613 0.90971 0.81930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 10.17 71.24 0.72 -0.56 16 2 C 0.11 2.13 6.78 42.55 0.29 2.41 16 3 C -0.17 -2.85 9.74 22.36 0.22 -2.63 16 4 C -0.06 -1.12 9.86 22.47 0.22 -0.90 16 5 C -0.14 -2.88 4.39 -19.77 -0.09 -2.97 16 6 C -0.06 -1.07 5.97 29.10 0.17 -0.90 16 7 C 0.46 13.12 7.95 71.24 0.57 13.69 16 8 O -0.53 -17.92 15.78 21.95 0.35 -17.58 16 9 O -0.34 -12.00 9.75 -45.04 -0.44 -12.44 16 10 C 0.07 2.68 5.94 71.23 0.42 3.10 16 11 C 0.44 21.18 7.86 87.66 0.69 21.87 16 12 O -0.62 -34.73 16.08 15.72 0.25 -34.48 16 13 N -0.56 -28.63 5.29 -306.99 -1.62 -30.25 16 14 C -0.34 -18.84 9.68 84.04 0.81 -18.02 16 15 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 16 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 17 N -0.92 -48.67 13.05 21.66 0.28 -48.39 16 18 Si 1.00 41.88 29.55 68.60 2.03 43.90 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 22 C 0.10 2.33 10.86 84.67 0.92 3.25 16 23 N -0.51 -12.42 10.27 -183.89 -1.89 -14.31 16 24 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 0.79 8.08 -2.39 -0.02 0.77 16 27 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 28 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 29 H 0.14 1.99 8.10 -2.39 -0.02 1.97 16 30 H 0.14 1.92 8.09 -2.39 -0.02 1.90 16 31 H 0.10 3.50 8.13 -2.38 -0.02 3.48 16 32 H 0.10 3.49 8.13 -2.39 -0.02 3.47 16 33 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 34 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -74.15 320.17 4.77 -69.38 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.39 Total: 25.89 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 5.42 Total: 18.26 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -3.23 Total: -92.95 kcal Atomic # 8 Polarization: -64.65 SS G_CDS: 0.16 Total: -64.49 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -74.15 4.77 -69.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.082 kcal (2) G-P(sol) polarization free energy of solvation -74.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds