Wall clock time and date at job start Tue Mar 31 2020 00:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99742 * 2 1 4 4 H 1.48504 * 109.46778 * 270.00297 * 3 2 1 5 5 H 1.48499 * 109.47209 * 30.00353 * 3 2 1 6 6 H 1.48496 * 109.46893 * 150.00295 * 3 2 1 7 7 C 1.37872 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99959 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00057 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47178 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00383 * 89.99721 * 10 9 7 12 12 C 1.50707 * 109.46935 * 270.00600 * 11 10 9 13 13 C 1.38227 * 119.62059 * 95.01845 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 274.99275 * 12 11 10 18 18 C 1.34777 * 119.99928 * 270.00155 * 10 9 7 19 19 O 1.21282 * 120.00051 * 359.97438 * 18 10 9 20 20 C 1.50702 * 119.99842 * 180.02562 * 18 10 9 21 21 C 1.50698 * 109.47118 * 179.97438 * 20 18 10 22 22 O 1.20829 * 120.00227 * 0.02562 * 21 20 18 23 23 O 1.34234 * 120.00326 * 179.97438 * 21 20 18 24 24 H 0.96992 * 120.00111 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47083 * 59.99449 * 9 7 2 26 26 H 1.08997 * 109.46896 * 299.99329 * 9 7 2 27 27 H 1.08997 * 109.47679 * 150.00067 * 11 10 9 28 28 H 1.09003 * 109.46652 * 30.00027 * 11 10 9 29 29 H 1.07998 * 120.41916 * 359.95342 * 13 12 11 30 30 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 31 31 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 32 32 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 33 33 H 1.08995 * 109.47002 * 299.99465 * 20 18 10 34 34 H 1.09002 * 109.47601 * 60.00005 * 20 18 10 35 35 H 0.96702 * 117.00270 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.2437 -3.2661 -1.2696 12 6 2.9876 -3.9766 -1.7040 13 6 2.1219 -3.3565 -2.5854 14 6 0.9720 -4.0210 -2.9828 15 6 0.7296 -5.2859 -2.4687 16 6 1.6411 -5.8424 -1.5918 17 7 2.7274 -5.1827 -1.2392 18 6 4.2251 -3.2102 1.1663 19 8 4.0237 -2.6381 2.2165 20 6 4.7280 -4.6308 1.1664 21 6 4.8965 -5.1039 2.5872 22 8 4.6345 -4.3637 3.5056 23 8 5.3366 -6.3481 2.8326 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6802 0.8888 26 1 3.8745 -0.6800 -0.8912 27 1 5.0456 -3.9927 -1.1395 28 1 4.5314 -2.5396 -2.0296 29 1 2.3405 -2.3683 -2.9624 30 1 0.2793 -3.5628 -3.6732 31 1 -0.1580 -5.8311 -2.7536 32 1 1.4617 -6.8287 -1.1901 33 1 4.0102 -5.2703 0.6528 34 1 5.6882 -4.6764 0.6524 35 1 5.4283 -6.6064 3.7600 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738427529.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:25 Heat of formation + Delta-G solvation = -75.618467 kcal Electronic energy + Delta-G solvation = -21896.063120 eV Core-core repulsion = 18473.906710 eV Total energy + Delta-G solvation = -3422.156410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.32433 -39.77744 -38.50921 -35.86062 -35.05762 -32.81058 -32.06039 -31.18436 -30.73164 -28.03924 -26.06758 -23.29552 -22.97110 -21.88327 -21.39323 -18.48255 -17.88577 -17.10058 -16.61091 -16.43794 -15.93987 -15.82137 -15.70084 -15.19075 -14.90686 -14.25495 -13.80487 -13.50441 -13.13802 -12.92055 -12.74432 -12.54912 -12.26214 -12.14867 -11.78376 -11.63177 -11.38141 -11.17066 -10.95428 -10.55539 -10.20531 -10.13128 -9.57469 -9.47717 -9.23280 -8.90257 -8.66146 -8.56837 -7.79141 -6.08336 -4.06507 1.43084 1.65533 2.55065 3.04009 3.24709 3.33318 3.35569 3.39428 3.86843 4.25592 4.39188 4.55387 4.88600 5.03274 5.14347 5.24163 5.30706 5.40460 5.44303 5.57222 5.64144 5.71532 5.83313 5.95762 6.10601 6.46496 6.57321 6.58890 6.72997 6.95185 7.03865 7.28290 7.59756 8.12407 8.20038 8.27389 8.46960 8.93518 8.98839 9.51770 11.04798 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.008241 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.277946 B = 3396.635098 C = 5025.838028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.871 3.129 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.074 0.926 9 C 0.215 3.785 10 N -0.590 5.590 11 C 0.162 3.838 12 C 0.114 3.886 13 C -0.121 4.121 14 C -0.074 4.074 15 C -0.175 4.175 16 C 0.090 3.910 17 N -0.485 5.485 18 C 0.513 3.487 19 O -0.497 6.497 20 C -0.143 4.143 21 C 0.474 3.526 22 O -0.470 6.470 23 O -0.525 6.525 24 H 0.263 0.737 25 H 0.044 0.956 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.123 0.877 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.357 -12.223 -7.067 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.698 3.302 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.092 0.908 9 C 0.095 3.905 10 N -0.323 5.323 11 C 0.037 3.963 12 C -0.025 4.025 13 C -0.142 4.142 14 C -0.100 4.100 15 C -0.195 4.195 16 C -0.067 4.067 17 N -0.195 5.195 18 C 0.298 3.702 19 O -0.370 6.370 20 C -0.184 4.184 21 C 0.313 3.687 22 O -0.354 6.354 23 O -0.338 6.338 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.141 0.859 35 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 8.565 -11.782 -6.029 15.765 hybrid contribution -0.620 1.082 -0.105 1.251 sum 7.945 -10.700 -6.134 14.671 Atomic orbital electron populations 1.69895 1.06166 1.26841 1.50602 1.24838 0.94710 0.98765 0.94608 0.86927 0.80791 0.84118 0.78400 1.20181 1.21042 1.18788 1.21286 0.89022 0.94707 1.50973 0.90771 1.19740 0.95956 0.77215 0.97562 1.47854 1.65579 1.15365 1.03508 1.20349 0.92532 0.95718 0.87659 1.21586 0.97486 0.90490 0.92889 1.21912 0.94522 1.00158 0.97581 1.21538 0.96304 0.94080 0.98053 1.22023 1.00713 0.96919 0.99824 1.22536 0.90046 0.99307 0.94810 1.67246 1.20474 1.08612 1.23193 1.19642 0.79331 0.86862 0.84363 1.90834 1.49673 1.66458 1.29993 1.21436 1.06436 0.98070 0.92424 1.22888 0.74199 0.79137 0.92467 1.90874 1.43758 1.54568 1.46174 1.84511 1.79919 1.33433 1.35931 0.92675 0.93854 0.95497 0.89599 0.88721 0.84563 0.85208 0.85445 0.83319 0.83407 0.85944 0.73614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.48 9.79 -34.44 -0.34 -14.81 16 8 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 9 C 0.22 5.08 4.27 -5.19 -0.02 5.06 16 10 N -0.59 -11.79 2.44 -176.43 -0.43 -12.22 16 11 C 0.16 2.43 5.57 -5.19 -0.03 2.40 16 12 C 0.11 1.86 6.36 -82.58 -0.53 1.33 16 13 C -0.12 -1.98 9.57 -39.44 -0.38 -2.35 16 14 C -0.07 -1.09 10.18 -39.28 -0.40 -1.49 16 15 C -0.17 -2.36 10.11 -39.44 -0.40 -2.76 16 16 C 0.09 1.26 11.18 -17.55 -0.20 1.06 16 17 N -0.49 -7.63 8.37 -9.47 -0.08 -7.71 16 18 C 0.51 10.81 7.66 -10.98 -0.08 10.73 16 19 O -0.50 -13.09 13.76 -18.96 -0.26 -13.36 16 20 C -0.14 -2.24 4.85 -29.03 -0.14 -2.38 16 21 C 0.47 7.83 8.32 36.00 0.30 8.13 16 22 O -0.47 -10.06 14.94 -26.86 -0.40 -10.46 16 23 O -0.53 -6.31 13.42 -39.27 -0.53 -6.84 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.04 1.13 6.48 -51.93 -0.34 0.79 16 26 H 0.03 0.58 7.32 -51.93 -0.38 0.20 16 27 H 0.09 1.00 6.44 -51.93 -0.33 0.67 16 28 H 0.09 1.20 7.79 -51.93 -0.40 0.80 16 29 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.15 2.25 6.10 -51.93 -0.32 1.93 16 34 H 0.12 1.42 7.40 -51.93 -0.38 1.03 16 35 H 0.41 3.13 9.10 45.56 0.41 3.55 16 LS Contribution 307.70 15.07 4.64 4.64 Total: -1.00 -38.04 307.70 -6.29 -44.33 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.02 Total: 4.65 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -2.31 Total: 6.90 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.26 Total: -46.37 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -1.19 Total: -30.66 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -38.04 -6.29 -44.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738427529.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.287 kcal (2) G-P(sol) polarization free energy of solvation -38.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds