Wall clock time and date at job start Tue Mar 31 2020 00:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99742 * 2 1 4 4 H 1.48504 * 109.46778 * 270.00297 * 3 2 1 5 5 H 1.48499 * 109.47209 * 30.00353 * 3 2 1 6 6 H 1.48496 * 109.46893 * 150.00295 * 3 2 1 7 7 C 1.37872 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99959 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00057 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47178 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00383 * 89.99721 * 10 9 7 12 12 C 1.50707 * 109.46935 * 270.00600 * 11 10 9 13 13 C 1.38227 * 119.62059 * 95.01845 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 274.99275 * 12 11 10 18 18 C 1.34777 * 119.99928 * 270.00155 * 10 9 7 19 19 O 1.21282 * 120.00051 * 359.97438 * 18 10 9 20 20 C 1.50702 * 119.99842 * 180.02562 * 18 10 9 21 21 C 1.50698 * 109.47118 * 179.97438 * 20 18 10 22 22 O 1.20829 * 120.00227 * 0.02562 * 21 20 18 23 23 O 1.34234 * 120.00326 * 179.97438 * 21 20 18 24 24 H 0.96992 * 120.00111 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47083 * 59.99449 * 9 7 2 26 26 H 1.08997 * 109.46896 * 299.99329 * 9 7 2 27 27 H 1.08997 * 109.47679 * 150.00067 * 11 10 9 28 28 H 1.09003 * 109.46652 * 30.00027 * 11 10 9 29 29 H 1.07998 * 120.41916 * 359.95342 * 13 12 11 30 30 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 31 31 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 32 32 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 33 33 H 1.08995 * 109.47002 * 299.99465 * 20 18 10 34 34 H 1.09002 * 109.47601 * 60.00005 * 20 18 10 35 35 H 0.96702 * 117.00270 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.2437 -3.2661 -1.2696 12 6 2.9876 -3.9766 -1.7040 13 6 2.1219 -3.3565 -2.5854 14 6 0.9720 -4.0210 -2.9828 15 6 0.7296 -5.2859 -2.4687 16 6 1.6411 -5.8424 -1.5918 17 7 2.7274 -5.1827 -1.2392 18 6 4.2251 -3.2102 1.1663 19 8 4.0237 -2.6381 2.2165 20 6 4.7280 -4.6308 1.1664 21 6 4.8965 -5.1039 2.5872 22 8 4.6345 -4.3637 3.5056 23 8 5.3366 -6.3481 2.8326 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6802 0.8888 26 1 3.8745 -0.6800 -0.8912 27 1 5.0456 -3.9927 -1.1395 28 1 4.5314 -2.5396 -2.0296 29 1 2.3405 -2.3683 -2.9624 30 1 0.2793 -3.5628 -3.6732 31 1 -0.1580 -5.8311 -2.7536 32 1 1.4617 -6.8287 -1.1901 33 1 4.0102 -5.2703 0.6528 34 1 5.6882 -4.6764 0.6524 35 1 5.4283 -6.6064 3.7600 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738427529.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:25 Heat of formation + Delta-G solvation = -103.563104 kcal Electronic energy + Delta-G solvation = -21897.274891 eV Core-core repulsion = 18473.906710 eV Total energy + Delta-G solvation = -3423.368180 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68624 -40.95704 -39.97615 -37.15608 -36.59381 -34.80755 -33.29752 -32.50369 -32.18362 -29.79241 -27.41150 -24.92504 -24.24207 -23.15300 -22.81890 -19.99246 -19.16630 -19.10424 -17.91721 -17.79932 -17.35706 -17.06808 -16.91984 -16.63503 -16.35732 -15.87846 -15.41952 -14.81947 -14.67353 -14.30155 -14.05791 -13.92239 -13.85471 -13.53951 -13.46319 -12.93400 -12.83384 -12.59919 -12.43443 -12.32183 -12.03827 -11.71250 -11.54256 -10.76634 -10.66831 -10.60737 -10.37383 -9.82838 -9.44340 -8.27721 -6.30385 0.27762 0.50074 1.28577 1.32315 1.38615 1.48307 1.70596 1.86212 2.34397 2.53140 3.01794 3.07871 3.44426 3.56274 3.90372 4.11404 4.20309 4.31323 4.37073 4.41537 4.48169 4.57831 4.70204 4.79303 4.86257 4.98008 5.00754 5.31975 5.43165 5.50794 5.62146 5.68658 5.92505 6.29529 6.57538 6.70893 7.07304 7.11568 7.27429 7.42110 8.88799 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.008241 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.277946 B = 3396.635098 C = 5025.838028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.013 3.987 3 Si 0.939 3.061 4 H -0.247 1.247 5 H -0.290 1.290 6 H -0.258 1.258 7 C -0.514 4.514 8 H 0.028 0.972 9 C 0.221 3.779 10 N -0.590 5.590 11 C 0.155 3.845 12 C 0.096 3.904 13 C -0.146 4.146 14 C -0.090 4.090 15 C -0.174 4.174 16 C 0.080 3.920 17 N -0.494 5.494 18 C 0.502 3.498 19 O -0.562 6.562 20 C -0.130 4.130 21 C 0.481 3.519 22 O -0.528 6.528 23 O -0.504 6.504 24 H 0.264 0.736 25 H 0.017 0.983 26 H 0.059 0.941 27 H 0.126 0.874 28 H 0.118 0.882 29 H 0.131 0.869 30 H 0.143 0.857 31 H 0.158 0.842 32 H 0.181 0.819 33 H 0.158 0.842 34 H 0.173 0.827 35 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.159 -13.493 -8.539 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.763 3.237 4 H -0.171 1.171 5 H -0.217 1.217 6 H -0.182 1.182 7 C -0.553 4.553 8 H 0.046 0.954 9 C 0.100 3.900 10 N -0.321 5.321 11 C 0.033 3.967 12 C -0.042 4.042 13 C -0.166 4.166 14 C -0.116 4.116 15 C -0.193 4.193 16 C -0.077 4.077 17 N -0.204 5.204 18 C 0.289 3.711 19 O -0.439 6.439 20 C -0.169 4.169 21 C 0.323 3.677 22 O -0.416 6.416 23 O -0.318 6.318 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.077 0.923 27 H 0.144 0.856 28 H 0.136 0.864 29 H 0.149 0.851 30 H 0.161 0.839 31 H 0.176 0.824 32 H 0.198 0.802 33 H 0.175 0.825 34 H 0.190 0.810 35 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 10.409 -13.124 -7.560 18.377 hybrid contribution -1.256 1.283 0.338 1.827 sum 9.153 -11.840 -7.222 16.617 Atomic orbital electron populations 1.70055 1.08108 1.27858 1.52608 1.25743 0.95508 1.02877 0.94369 0.85842 0.79185 0.78866 0.79849 1.17119 1.21666 1.18184 1.21399 0.91169 0.92826 1.49863 0.95404 1.19454 0.93102 0.79934 0.97556 1.47874 1.64493 1.14362 1.05405 1.20778 0.93263 0.96883 0.85815 1.21745 0.98074 0.91056 0.93312 1.22069 0.95572 1.00347 0.98609 1.21864 0.96272 0.94926 0.98563 1.22405 1.01533 0.96441 0.98958 1.23160 0.89563 1.00462 0.94536 1.67271 1.21342 1.08537 1.23255 1.20586 0.78269 0.88660 0.83550 1.90805 1.52484 1.68355 1.32304 1.21394 1.08829 0.94025 0.92687 1.23009 0.72911 0.79598 0.92187 1.90875 1.46496 1.56429 1.47782 1.84449 1.78608 1.30800 1.37940 0.92670 0.96457 0.92297 0.85611 0.86410 0.85096 0.83942 0.82413 0.80219 0.82454 0.80981 0.71127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16 2 C 0.01 0.73 5.47 84.65 0.46 1.19 16 3 Si 0.94 43.87 27.47 68.60 1.88 45.75 16 4 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.26 -11.73 6.54 99.48 0.65 -11.07 16 7 C -0.51 -29.23 9.79 25.60 0.25 -28.98 16 8 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 9 C 0.22 10.40 4.27 85.63 0.37 10.77 16 10 N -0.59 -23.04 2.44 -830.48 -2.03 -25.06 16 11 C 0.16 4.27 5.57 85.63 0.48 4.75 16 12 C 0.10 3.00 6.36 42.55 0.27 3.28 16 13 C -0.15 -4.70 9.57 22.36 0.21 -4.49 16 14 C -0.09 -2.63 10.18 22.47 0.23 -2.40 16 15 C -0.17 -4.40 10.11 22.36 0.23 -4.17 16 16 C 0.08 2.06 11.18 84.67 0.95 3.01 16 17 N -0.49 -14.58 8.37 -183.88 -1.54 -16.12 16 18 C 0.50 20.95 7.66 87.66 0.67 21.62 16 19 O -0.56 -30.51 13.76 20.40 0.28 -30.23 16 20 C -0.13 -3.74 4.85 29.10 0.14 -3.60 16 21 C 0.48 15.15 8.32 71.24 0.59 15.75 16 22 O -0.53 -22.81 14.94 29.71 0.44 -22.36 16 23 O -0.50 -10.58 13.42 -51.45 -0.69 -11.28 16 24 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 25 H 0.02 0.91 6.48 -2.39 -0.02 0.90 16 26 H 0.06 2.40 7.32 -2.39 -0.02 2.38 16 27 H 0.13 2.41 6.44 -2.39 -0.02 2.40 16 28 H 0.12 2.65 7.79 -2.39 -0.02 2.64 16 29 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 30 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 31 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 32 H 0.18 3.37 8.06 -2.91 -0.02 3.34 16 33 H 0.16 4.34 6.10 -2.39 -0.01 4.33 16 34 H 0.17 3.17 7.40 -2.39 -0.02 3.16 16 35 H 0.43 5.40 9.10 -74.06 -0.67 4.73 16 Total: -1.00 -88.06 307.70 3.90 -84.16 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.40 Total: 17.24 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 4.85 Total: 16.72 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -3.27 Total: -100.01 kcal Atomic # 8 Polarization: -63.90 SS G_CDS: 0.03 Total: -63.87 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -88.06 3.90 -84.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738427529.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.405 kcal (2) G-P(sol) polarization free energy of solvation -88.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds