Wall clock time and date at job start Mon Mar 30 2020 23:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35903 * 116.99959 * 180.02562 * 11 10 9 13 13 C 1.38870 * 119.97977 * 359.71547 * 12 11 10 14 14 C 1.38261 * 120.25683 * 179.76426 * 13 12 11 15 15 C 1.37979 * 120.21794 * 0.52090 * 14 13 12 16 16 C 1.39677 * 119.95054 * 359.73949 * 15 14 13 17 17 C 1.47516 * 120.12646 * 180.02562 * 16 15 14 18 18 N 1.29731 * 119.99683 * 359.97438 * 17 16 15 19 19 N 1.40104 * 119.99466 * 179.97438 * 18 17 16 20 20 C 1.34777 * 119.99616 * 180.02562 * 19 18 17 21 21 O 1.21522 * 119.99551 * 180.02562 * 20 19 18 22 22 O 1.34675 * 119.99998 * 359.97438 * 20 19 18 23 23 C 1.38426 * 119.97719 * 179.97438 * 12 11 10 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.08000 * 119.87333 * 0.02562 * 13 12 11 30 30 H 1.08007 * 119.88883 * 180.23848 * 14 13 12 31 31 H 1.07997 * 120.02294 * 179.76094 * 15 14 13 32 32 H 1.07999 * 119.99933 * 179.97438 * 17 16 15 33 33 H 0.97004 * 119.99988 * 0.02562 * 19 18 17 34 34 H 0.96699 * 116.99812 * 179.97438 * 22 20 19 35 35 H 1.08003 * 120.10906 * 359.95869 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2708 -6.0394 0.0004 13 6 3.6575 -5.9663 -0.0046 14 6 4.4161 -7.1222 0.0008 15 6 3.8004 -8.3570 0.0003 16 6 2.4061 -8.4409 -0.0002 17 6 1.7438 -9.7590 -0.0002 18 7 2.4564 -10.8430 -0.0003 19 7 1.8273 -12.0949 0.0003 20 6 2.5677 -13.2211 0.0007 21 8 2.0220 -14.3069 0.0007 22 8 3.9122 -13.1431 0.0001 23 6 1.6418 -7.2726 0.0004 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 4.1454 -5.0028 -0.0084 30 1 5.4943 -7.0584 0.0008 31 1 4.3960 -9.2578 0.0006 32 1 0.6656 -9.8215 -0.0001 33 1 0.8589 -12.1510 0.0004 34 1 4.4003 -13.9778 0.0009 35 1 0.5634 -7.3307 0.0007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738427681.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:58 Heat of formation + Delta-G solvation = -66.334650 kcal Electronic energy + Delta-G solvation = -19512.443539 eV Core-core repulsion = 16090.689705 eV Total energy + Delta-G solvation = -3421.753833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.60916 -39.88324 -37.93347 -36.79026 -36.35248 -33.46344 -32.99430 -31.07004 -30.05872 -29.05272 -25.34710 -24.17286 -22.94093 -22.44284 -21.50433 -20.25540 -18.74825 -18.30880 -17.51994 -16.95944 -16.40705 -16.31826 -15.72869 -15.41568 -15.22704 -14.75172 -14.48874 -13.87290 -13.61788 -13.45387 -12.97010 -12.70959 -12.35490 -11.94345 -11.68682 -11.53479 -11.50647 -11.31549 -10.92236 -10.89776 -10.71371 -10.52044 -10.04314 -9.85203 -9.71364 -9.36049 -8.58658 -8.47878 -7.96140 -6.14063 -4.19029 0.54765 1.53523 1.72386 1.99096 2.57621 3.24676 3.26166 3.31100 3.32712 3.77150 3.87909 4.31651 4.38261 4.85730 4.97511 5.14335 5.22410 5.23439 5.32717 5.47029 5.68857 5.95432 5.96485 5.96502 6.01684 6.33464 6.42816 6.46301 6.48163 6.62819 6.78399 7.19438 7.44088 7.58711 7.74581 7.97136 8.02790 8.18965 8.86307 9.45529 10.97356 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.060906 B = 0.002319 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.610912 B =12070.137727 C =12509.302446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.064 3.936 11 O -0.314 6.314 12 C 0.140 3.860 13 C -0.190 4.190 14 C -0.087 4.087 15 C -0.125 4.125 16 C -0.032 4.032 17 C 0.139 3.861 18 N -0.242 5.242 19 N -0.556 5.556 20 C 0.699 3.301 21 O -0.573 6.573 22 O -0.502 6.502 23 C -0.128 4.128 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.411 0.589 34 H 0.427 0.573 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.376 -20.815 0.003 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.010 4.010 11 O -0.227 6.227 12 C 0.093 3.907 13 C -0.209 4.209 14 C -0.105 4.105 15 C -0.145 4.145 16 C -0.034 4.034 17 C -0.072 4.072 18 N -0.049 5.049 19 N -0.309 5.309 20 C 0.452 3.548 21 O -0.460 6.460 22 O -0.309 6.309 23 C -0.150 4.150 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.255 0.745 34 H 0.286 0.714 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.717 -21.257 0.001 22.293 hybrid contribution -0.391 0.713 0.000 0.813 sum 6.325 -20.544 0.001 21.496 Atomic orbital electron populations 1.69964 1.06102 1.27134 1.49511 1.24992 0.94920 0.99407 0.94869 0.86539 0.79495 0.82560 0.78731 1.20084 1.21124 1.20078 1.20923 0.93015 0.90195 1.52492 0.92391 1.19122 0.94171 0.88967 0.98917 1.23370 0.97151 0.80666 0.99770 1.86186 1.36433 1.13129 1.87001 1.18969 0.90056 0.87526 0.94134 1.21610 0.93203 1.00179 1.05955 1.20902 0.99856 0.91629 0.98097 1.21192 0.93330 0.98109 1.01890 1.17908 0.93081 0.88909 1.03515 1.24495 0.97776 0.90737 0.94172 1.74926 1.25504 0.90178 1.14282 1.45643 1.08000 1.01544 1.75680 1.17141 0.81103 0.82002 0.74514 1.91156 1.72985 1.25474 1.56417 1.84338 1.17346 1.41918 1.87329 1.20406 1.00262 0.88872 1.05412 0.92617 0.95369 0.95356 0.92977 0.92987 0.84835 0.85579 0.85009 0.85675 0.74492 0.71377 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.26 9.11 -34.44 -0.31 -14.57 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.64 5.34 -27.89 -0.15 0.49 16 10 C 0.06 1.29 4.68 37.16 0.17 1.46 16 11 O -0.31 -5.90 10.13 -19.44 -0.20 -6.10 16 12 C 0.14 2.15 6.68 -39.28 -0.26 1.89 16 13 C -0.19 -2.61 9.03 -39.34 -0.36 -2.96 16 14 C -0.09 -1.00 10.02 -39.67 -0.40 -1.40 16 15 C -0.12 -1.40 9.57 -39.14 -0.37 -1.77 16 16 C -0.03 -0.35 5.87 -105.06 -0.62 -0.97 16 17 C 0.14 1.24 10.75 -14.66 -0.16 1.08 16 18 N -0.24 -2.42 10.17 32.16 0.33 -2.10 16 19 N -0.56 -5.05 6.27 27.60 0.17 -4.88 16 20 C 0.70 7.14 9.18 54.06 0.50 7.64 16 21 O -0.57 -7.27 17.97 -19.29 -0.35 -7.62 16 22 O -0.50 -4.08 13.04 -40.42 -0.53 -4.61 16 23 C -0.13 -1.62 9.73 -39.00 -0.38 -2.00 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.99 7.67 -51.93 -0.40 0.59 16 28 H 0.05 0.98 7.65 -51.93 -0.40 0.59 16 29 H 0.13 1.80 6.28 -52.49 -0.33 1.47 16 30 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 31 H 0.13 1.37 7.55 -52.49 -0.40 0.97 16 32 H 0.13 0.73 8.02 -52.49 -0.42 0.31 16 33 H 0.41 2.75 8.75 -182.59 -1.60 1.15 16 34 H 0.43 1.27 9.11 45.56 0.42 1.68 16 35 H 0.14 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 320.63 15.07 4.83 4.83 Total: -1.00 -33.21 320.63 -6.81 -40.02 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.36 Total: -0.65 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -2.43 Total: -9.54 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 1.24 Total: -32.11 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -1.07 Total: -18.33 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.21 -6.81 -40.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738427681.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.311 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds