Wall clock time and date at job start Mon Mar 30 2020 23:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35903 * 116.99959 * 180.02562 * 11 10 9 13 13 C 1.38870 * 119.97977 * 359.71547 * 12 11 10 14 14 C 1.38261 * 120.25683 * 179.76426 * 13 12 11 15 15 C 1.37979 * 120.21794 * 0.52090 * 14 13 12 16 16 C 1.39677 * 119.95054 * 359.73949 * 15 14 13 17 17 C 1.47516 * 120.12646 * 180.02562 * 16 15 14 18 18 N 1.29731 * 119.99683 * 359.97438 * 17 16 15 19 19 N 1.40104 * 119.99466 * 179.97438 * 18 17 16 20 20 C 1.34777 * 119.99616 * 180.02562 * 19 18 17 21 21 O 1.21522 * 119.99551 * 180.02562 * 20 19 18 22 22 O 1.34675 * 119.99998 * 359.97438 * 20 19 18 23 23 C 1.38426 * 119.97719 * 179.97438 * 12 11 10 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.08000 * 119.87333 * 0.02562 * 13 12 11 30 30 H 1.08007 * 119.88883 * 180.23848 * 14 13 12 31 31 H 1.07997 * 120.02294 * 179.76094 * 15 14 13 32 32 H 1.07999 * 119.99933 * 179.97438 * 17 16 15 33 33 H 0.97004 * 119.99988 * 0.02562 * 19 18 17 34 34 H 0.96699 * 116.99812 * 179.97438 * 22 20 19 35 35 H 1.08003 * 120.10906 * 359.95869 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2708 -6.0394 0.0004 13 6 3.6575 -5.9663 -0.0046 14 6 4.4161 -7.1222 0.0008 15 6 3.8004 -8.3570 0.0003 16 6 2.4061 -8.4409 -0.0002 17 6 1.7438 -9.7590 -0.0002 18 7 2.4564 -10.8430 -0.0003 19 7 1.8273 -12.0949 0.0003 20 6 2.5677 -13.2211 0.0007 21 8 2.0220 -14.3069 0.0007 22 8 3.9122 -13.1431 0.0001 23 6 1.6418 -7.2726 0.0004 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 4.1454 -5.0028 -0.0084 30 1 5.4943 -7.0584 0.0008 31 1 4.3960 -9.2578 0.0006 32 1 0.6656 -9.8215 -0.0001 33 1 0.8589 -12.1510 0.0004 34 1 4.4003 -13.9778 0.0009 35 1 0.5634 -7.3307 0.0007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738427681.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:58 Heat of formation + Delta-G solvation = -90.469652 kcal Electronic energy + Delta-G solvation = -19513.490111 eV Core-core repulsion = 16090.689705 eV Total energy + Delta-G solvation = -3422.800406 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35911 -41.00310 -38.95171 -37.70427 -37.10236 -35.44065 -33.84830 -32.57878 -31.28366 -30.18299 -27.05564 -25.27503 -23.74157 -23.46356 -22.96662 -21.43318 -19.57921 -19.22938 -18.63235 -18.07279 -17.69284 -17.15465 -16.89823 -16.88467 -16.60792 -16.12184 -15.63760 -14.65703 -14.55391 -14.38331 -14.30986 -14.22544 -13.99606 -13.14923 -13.03371 -12.68190 -12.59603 -12.54862 -12.52678 -12.15726 -12.03451 -11.59713 -11.57097 -11.41958 -11.32207 -10.76824 -10.58409 -9.48098 -9.04924 -8.24045 -6.37112 -0.31278 0.54373 1.05306 1.15588 1.43333 1.46627 1.54535 1.80851 2.26729 2.48204 2.76064 2.91928 3.10614 3.65101 3.93039 4.10971 4.28131 4.29907 4.33323 4.43526 4.45819 4.57152 4.79139 4.85172 5.05217 5.33633 5.36099 5.45484 5.52175 5.53384 5.54359 5.70049 5.78335 5.85621 6.10651 6.53107 6.58642 6.77990 7.32874 7.37654 8.88593 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.060906 B = 0.002319 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.610912 B =12070.137727 C =12509.302446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.027 3.973 10 C 0.084 3.916 11 O -0.338 6.338 12 C 0.104 3.896 13 C -0.200 4.200 14 C -0.083 4.083 15 C -0.121 4.121 16 C -0.027 4.027 17 C 0.144 3.856 18 N -0.257 5.257 19 N -0.550 5.550 20 C 0.700 3.300 21 O -0.603 6.603 22 O -0.502 6.502 23 C -0.127 4.127 24 H 0.266 0.734 25 H -0.001 1.001 26 H -0.001 1.001 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.132 0.868 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.159 0.841 33 H 0.422 0.578 34 H 0.446 0.554 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.093 -21.674 0.003 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.010 4.010 10 C 0.010 3.990 11 O -0.252 6.252 12 C 0.058 3.942 13 C -0.219 4.219 14 C -0.101 4.101 15 C -0.141 4.141 16 C -0.030 4.030 17 C -0.067 4.067 18 N -0.064 5.064 19 N -0.304 5.304 20 C 0.454 3.546 21 O -0.492 6.492 22 O -0.313 6.313 23 C -0.148 4.148 24 H 0.075 0.925 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.150 0.850 30 H 0.171 0.829 31 H 0.163 0.837 32 H 0.176 0.824 33 H 0.267 0.733 34 H 0.309 0.691 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.464 -22.144 0.002 23.707 hybrid contribution -0.893 0.805 0.000 1.202 sum 7.571 -21.340 0.001 22.643 Atomic orbital electron populations 1.70111 1.07980 1.28201 1.50683 1.26020 0.95810 1.03613 0.94303 0.85371 0.78127 0.77385 0.79400 1.18883 1.20993 1.18872 1.21385 0.93860 0.91079 1.51981 0.91068 1.18964 0.94613 0.91349 0.96091 1.22865 0.95353 0.80146 1.00665 1.86089 1.37214 1.13598 1.88327 1.19288 0.90903 0.86970 0.97000 1.21697 0.92721 1.01066 1.06463 1.21177 1.01121 0.90861 0.96954 1.21466 0.93632 0.98476 1.00510 1.18038 0.93132 0.89409 1.02387 1.24547 0.99278 0.89443 0.93385 1.74858 1.26386 0.90605 1.14566 1.45568 1.08588 1.01036 1.75170 1.17216 0.81583 0.81764 0.74078 1.91140 1.73656 1.26556 1.57888 1.84315 1.16464 1.43653 1.86828 1.20574 1.01186 0.88346 1.04717 0.92518 0.98247 0.98234 0.92013 0.92020 0.85049 0.82940 0.83714 0.82439 0.73293 0.69107 0.83358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 2 C 0.00 0.06 5.46 84.65 0.46 0.53 16 3 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 7 C -0.55 -29.83 9.11 25.60 0.23 -29.60 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.42 5.34 29.85 0.16 1.58 16 10 C 0.08 3.43 4.68 71.98 0.34 3.76 16 11 O -0.34 -12.99 10.13 -92.46 -0.94 -13.93 16 12 C 0.10 3.15 6.68 22.47 0.15 3.30 16 13 C -0.20 -5.29 9.03 22.43 0.20 -5.09 16 14 C -0.08 -1.73 10.02 22.21 0.22 -1.50 16 15 C -0.12 -2.39 9.57 22.56 0.22 -2.17 16 16 C -0.03 -0.54 5.87 -20.15 -0.12 -0.66 16 17 C 0.14 2.15 10.75 87.45 0.94 3.09 16 18 N -0.26 -4.46 10.17 -52.15 -0.53 -4.99 16 19 N -0.55 -8.79 6.27 -296.96 -1.86 -10.65 16 20 C 0.70 13.11 9.18 129.79 1.19 14.30 16 21 O -0.60 -14.63 17.97 19.77 0.36 -14.27 16 22 O -0.50 -7.15 13.04 -55.85 -0.73 -7.88 16 23 C -0.13 -3.05 9.73 22.65 0.22 -2.83 16 24 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 25 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 27 H 0.06 2.36 7.67 -2.39 -0.02 2.34 16 28 H 0.06 2.35 7.65 -2.39 -0.02 2.33 16 29 H 0.13 3.45 6.28 -2.91 -0.02 3.43 16 30 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.15 2.54 7.55 -2.91 -0.02 2.52 16 32 H 0.16 1.29 8.02 -2.91 -0.02 1.27 16 33 H 0.42 4.73 8.75 -213.31 -1.87 2.86 16 34 H 0.45 1.81 9.11 -74.06 -0.67 1.13 16 35 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -72.50 320.63 1.43 -71.07 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -1.40 Total: 6.65 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 4.22 Total: -15.29 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -2.11 Total: -70.90 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -1.31 Total: -36.08 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -72.50 1.43 -71.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738427681.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.398 kcal (2) G-P(sol) polarization free energy of solvation -72.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds