Wall clock time and date at job start Tue Mar 31 2020 00:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38369 * 119.45127 * 2 1 4 4 C 1.38338 * 119.30783 * 179.71340 * 3 2 1 5 5 C 1.40087 * 118.28237 * 0.52839 * 4 3 2 6 6 C 1.47730 * 120.56492 * 179.73124 * 5 4 3 7 7 O 1.21581 * 120.00171 * 120.64595 * 6 5 4 8 8 N 1.34777 * 119.99780 * 300.64821 * 6 5 4 9 9 C 1.36872 * 120.00176 * 184.40225 * 8 6 5 10 10 H 1.08003 * 119.99632 * 346.87690 * 9 8 6 11 11 C 1.39046 * 120.00069 * 166.86990 * 9 8 6 12 12 N 1.31363 * 120.00410 * 359.85484 * 11 9 8 13 13 Si 1.86804 * 119.99897 * 179.85163 * 11 9 8 14 14 H 1.48503 * 109.46936 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47043 * 120.00134 * 13 11 9 16 16 H 1.48497 * 109.47142 * 240.00310 * 13 11 9 17 17 C 1.46512 * 119.99960 * 4.40232 * 8 6 5 18 18 C 1.50703 * 109.46785 * 263.21149 * 17 8 6 19 19 O 1.20826 * 120.00259 * 0.02562 * 18 17 8 20 20 O 1.34233 * 119.99431 * 179.97438 * 18 17 8 21 21 C 1.39587 * 118.87009 * 359.45211 * 5 4 3 22 22 C 1.50702 * 119.72440 * 180.27943 * 21 5 4 23 23 N 1.31681 * 120.55888 * 0.30060 * 21 5 4 24 24 H 1.09000 * 109.47359 * 270.02115 * 1 2 3 25 25 H 1.09004 * 109.46843 * 30.02430 * 1 2 3 26 26 H 1.08998 * 109.47184 * 150.02086 * 1 2 3 27 27 H 1.07998 * 120.34917 * 359.97438 * 3 2 1 28 28 H 1.08005 * 120.85680 * 180.27850 * 4 3 2 29 29 H 0.96992 * 120.00306 * 179.97438 * 12 11 9 30 30 H 1.08996 * 109.46696 * 23.21420 * 17 8 6 31 31 H 1.09000 * 109.46763 * 143.21298 * 17 8 6 32 32 H 0.96699 * 116.99743 * 179.97438 * 20 18 17 33 33 H 1.08995 * 109.47118 * 94.40488 * 22 21 5 34 34 H 1.09001 * 109.47215 * 214.41184 * 22 21 5 35 35 H 1.09004 * 109.46729 * 334.40602 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1873 1.2049 0.0000 4 6 3.5707 1.2014 0.0060 5 6 4.2314 -0.0338 0.0006 6 6 5.7074 -0.0963 0.0006 7 8 6.2918 -0.6624 0.9041 8 7 6.4060 0.4742 -1.0008 9 6 7.7672 0.3394 -1.0490 10 1 8.3036 -0.0341 -0.1893 11 6 8.4594 0.6832 -2.2049 12 7 7.8067 1.1347 -3.2517 13 14 10.3176 0.5031 -2.2693 14 1 10.8092 -0.0229 -0.9705 15 1 10.6862 -0.4395 -3.3560 16 1 10.9345 1.8279 -2.5328 17 6 5.7084 1.2388 -2.0378 18 6 5.4724 0.3582 -3.2378 19 8 5.8479 -0.7902 -3.2278 20 8 4.8441 0.8496 -4.3175 21 6 3.4714 -1.2047 0.0010 22 6 4.1623 -2.5440 0.0016 23 7 2.1557 -1.1488 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6441 2.1383 -0.0004 28 1 4.1269 2.1272 0.0107 29 1 8.2895 1.3749 -4.0578 30 1 4.7517 1.5883 -1.6497 31 1 6.3169 2.0948 -2.3293 32 1 4.7160 0.2470 -5.0629 33 1 4.2586 -2.9026 1.0263 34 1 3.5754 -3.2558 -0.5789 35 1 5.1526 -2.4421 -0.4424 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738505266.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:31 Heat of formation + Delta-G solvation = -73.873846 kcal Electronic energy + Delta-G solvation = -22444.491150 eV Core-core repulsion = 19022.410393 eV Total energy + Delta-G solvation = -3422.080757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37938 -39.11900 -37.94957 -35.31886 -34.48574 -33.25426 -32.77822 -31.52071 -28.81244 -27.81049 -27.05231 -24.76260 -22.47561 -21.87147 -21.00637 -19.61514 -17.25317 -17.04082 -16.54396 -16.28724 -15.62050 -15.24962 -14.90463 -14.56479 -14.37382 -14.08609 -13.65564 -13.36254 -13.00695 -12.79437 -12.71639 -12.17556 -11.96775 -11.86487 -11.70560 -11.56358 -11.51174 -11.27717 -11.03562 -10.47816 -10.42687 -10.33997 -9.68839 -9.38024 -9.35115 -9.13718 -8.70771 -8.35205 -8.09746 -6.52283 -4.04708 1.23544 1.50883 3.05480 3.18277 3.25191 3.44042 3.69320 3.84301 4.09877 4.26139 4.40383 4.68591 4.89596 5.01421 5.07182 5.26612 5.36282 5.60085 5.61701 5.70598 5.86803 5.88712 5.99890 6.09771 6.14254 6.33406 6.47874 6.54999 6.60609 6.73694 6.98361 7.38837 7.59392 7.80314 8.22550 8.27194 8.92881 9.08072 9.20233 9.66409 10.49978 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.006568 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.596921 B = 4261.810925 C = 4729.771647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.125 3.875 3 C -0.183 4.183 4 C -0.057 4.057 5 C -0.152 4.152 6 C 0.497 3.503 7 O -0.568 6.568 8 N -0.421 5.421 9 C -0.284 4.284 10 H 0.113 0.887 11 C 0.028 3.972 12 N -0.897 5.897 13 Si 0.944 3.056 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.140 3.860 18 C 0.502 3.498 19 O -0.519 6.519 20 O -0.535 6.535 21 C 0.172 3.828 22 C -0.100 4.100 23 N -0.489 5.489 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.140 0.860 29 H 0.274 0.726 30 H 0.073 0.927 31 H 0.142 0.858 32 H 0.389 0.611 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.470 3.175 0.410 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.013 4.013 3 C -0.203 4.203 4 C -0.083 4.083 5 C -0.157 4.157 6 C 0.285 3.715 7 O -0.451 6.451 8 N -0.139 5.139 9 C -0.411 4.411 10 H 0.130 0.870 11 C -0.172 4.172 12 N -0.540 5.540 13 Si 0.771 3.229 14 H -0.190 1.190 15 H -0.206 1.206 16 H -0.205 1.205 17 C 0.014 3.986 18 C 0.343 3.657 19 O -0.406 6.406 20 O -0.345 6.345 21 C 0.033 3.967 22 C -0.158 4.158 23 N -0.199 5.199 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.153 0.847 28 H 0.158 0.842 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.160 0.840 32 H 0.245 0.755 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.363 2.131 1.025 10.629 hybrid contribution 1.282 0.458 -0.972 1.673 sum -9.081 2.589 0.053 9.443 Atomic orbital electron populations 1.20675 0.89061 1.03211 1.02763 1.21295 0.96788 0.88409 0.94798 1.21770 0.94458 0.99110 1.04960 1.21750 0.94375 0.97539 0.94634 1.21117 0.96380 0.94381 1.03867 1.17635 0.85031 0.83152 0.85679 1.90645 1.70124 1.46920 1.37439 1.43413 1.06724 1.43936 1.19833 1.19934 0.80187 1.40584 1.00402 0.86962 1.25305 1.01600 0.96029 0.94216 1.69430 1.36001 1.44301 1.04251 0.85564 0.80713 0.77932 0.78738 1.19044 1.20591 1.20548 1.21186 0.97380 0.95401 0.84624 1.23460 0.71714 0.86947 0.83562 1.90576 1.47705 1.20398 1.81924 1.84510 1.73599 1.49094 1.27297 1.21271 0.88351 0.95254 0.91792 1.20717 1.00471 0.91533 1.03041 1.67321 1.09218 1.29130 1.14243 0.90654 0.90848 0.90675 0.84728 0.84248 0.91499 0.90900 0.84046 0.75516 0.90188 0.91085 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.16 36.00 0.37 -0.69 16 2 C 0.13 1.90 6.78 -82.50 -0.56 1.34 16 3 C -0.18 -2.61 9.72 -39.50 -0.38 -2.99 16 4 C -0.06 -0.96 7.70 -38.85 -0.30 -1.26 16 5 C -0.15 -3.15 4.97 -104.82 -0.52 -3.68 16 6 C 0.50 12.19 5.86 -12.38 -0.07 12.12 16 7 O -0.57 -15.49 15.96 5.29 0.08 -15.40 16 8 N -0.42 -10.54 2.18 -117.20 -0.26 -10.80 16 9 C -0.28 -7.62 9.30 -15.00 -0.14 -7.76 16 10 H 0.11 3.13 7.22 -52.48 -0.38 2.75 16 11 C 0.03 0.72 5.26 -17.45 -0.09 0.63 16 12 N -0.90 -22.63 7.77 55.50 0.43 -22.20 16 13 Si 0.94 20.49 29.55 -169.99 -5.02 15.47 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 17 C 0.14 3.10 5.17 -5.19 -0.03 3.08 16 18 C 0.50 11.59 6.03 36.01 0.22 11.81 16 19 O -0.52 -13.85 16.59 -18.75 -0.31 -14.16 16 20 O -0.53 -10.21 13.42 -39.27 -0.53 -10.73 16 21 C 0.17 3.45 6.82 -82.15 -0.56 2.88 16 22 C -0.10 -1.94 9.55 36.01 0.34 -1.59 16 23 N -0.49 -8.86 10.17 -5.40 -0.05 -8.91 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.14 2.09 7.39 -52.48 -0.39 1.70 16 29 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.07 1.39 4.21 -51.93 -0.22 1.17 16 31 H 0.14 3.23 6.30 -51.93 -0.33 2.90 16 32 H 0.39 5.84 9.10 45.56 0.41 6.26 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.89 6.72 -51.93 -0.35 1.54 16 LS Contribution 302.22 15.07 4.55 4.55 Total: -1.00 -32.91 302.22 -5.74 -38.65 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -2.91 Total: 9.64 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: -1.73 Total: 13.88 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.12 Total: -41.90 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.75 Total: -40.29 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.91 -5.74 -38.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738505266.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.222 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds